Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN04G2897 Fragaria x ananassa HOM05D004152 ORTHO05D004878 8.0e-138 493.8 258 100.0
FAN08G2273 Fragaria x ananassa HOM05D004152 ORTHO05D004878 6.8e-129 464.2 256 93.8
FAN13G0727 Fragaria x ananassa HOM05D004152 ORTHO05D004878 3.7e-127 458.4 258 92.2
FAN18G1702 Fragaria x ananassa HOM05D004152 ORTHO05D004878 2.2e-124 449.1 258 90.7
FvH4_5g19250 Fragaria vesca HOM05D004152 ORTHO05D004878 4.9e-119 431.4 257 87.9
Prupe.5G066300 Prunus persica HOM05D004152 ORTHO05D004878 5.0e-108 394.8 256 80.9
MD04G1062100 Malus domestica HOM05D004152 ORTHO05D004878 5.6e-107 391.3 256 82.0
MD06G1055800 Malus domestica HOM05D004152 ORTHO05D004878 1.5e-104 383.3 254 79.9
QL12p011587 Quercus lobata HOM05D004152 ORTHO05D004878 2.1e-93 346.3 263 71.1
CANSAT21G2552 Cannabis sativa HOM05D004152 ORTHO05D004878 5.1e-92 341.7 254 70.9
Gohir.A04G110300 Gossypium hirsutum HOM05D004152 ORTHO05D004878 1.5e-91 340.1 258 69.4
Cfa019694 Carpinus fangiana HOM05D004152 ORTHO05D004878 2.5e-91 339.3 259 70.3
Haze_18794 Corylus avellana HOM05D004152 ORTHO05D004878 2.5e-91 339.3 258 72.1
Gorai.012G137200 Gossypium raimondii HOM05D004152 ORTHO05D004878 4.3e-91 338.6 260 69.2
Duzib052G0353 Durio zibethinus HOM05D004152 ORTHO05D004878 1.2e-90 337.0 261 69.3
Manes.01G082700 Manihot esculenta HOM05D004152 ORTHO05D004878 1.6e-90 336.7 254 70.1
COL.COLO4_08312 Corchorus olitorius HOM05D004152 ORTHO05D004878 2.1e-90 336.3 261 69.7
Gohir.D04G150500 Gossypium hirsutum HOM05D004152 ORTHO05D004878 2.1e-90 336.3 260 68.8
Gohir.D04G150600 Gossypium hirsutum HOM05D004152 ORTHO05D004878 2.1e-90 336.3 260 68.8
TWI81G0703 Tripterygium wilfordii HOM05D004152 ORTHO05D004878 8.1e-90 334.3 258 69.8
Thecc.02G150400 Theobroma cacao HOM05D004152 ORTHO05D004878 1.1e-89 334.0 253 68.8
VMungo0331G1163 Vigna mungo HOM05D004152 ORTHO05D004878 1.1e-89 334.0 227 74.4
Nitab4.5_0000618g0090 Nicotiana tabacum HOM05D004152 ORTHO05D004878 1.2e-88 330.5 228 72.8
CiPaw.16G091100 Carya illinoinensis HOM05D004152 ORTHO05D004878 7.6e-88 327.8 258 69.8
Sabra03G0074600 Salix brachista HOM05D004152 ORTHO05D004878 7.6e-88 327.8 253 68.4
Gorai.005G214700 Gossypium raimondii HOM05D004152 ORTHO05D004878 9.9e-88 327.4 266 66.5
Aqoxy7G00850 Aquilegia oxysepala HOM05D004152 ORTHO05D004878 1.3e-87 327.0 256 68.4
Nitab4.5_0002881g0050 Nicotiana tabacum HOM05D004152 ORTHO05D004878 1.7e-87 326.6 258 66.7
ClCG01G004210 Citrullus lanatus HOM05D004152 ORTHO05D004878 2.9e-87 325.9 256 67.6
Potri.003G107800 Populus trichocarpa HOM05D004152 ORTHO05D004878 3.7e-87 325.5 253 68.0
TWI60G0584 Tripterygium wilfordii HOM05D004152 ORTHO05D004878 4.9e-87 325.1 253 68.0
Gohir.D02G191900 Gossypium hirsutum HOM05D004152 ORTHO05D004878 6.4e-87 324.7 266 67.7
Glyma.08G210500 Glycine max HOM05D004152 ORTHO05D004878 8.4e-87 324.3 228 74.6
Lj2C222T2 Lonicera japonica HOM05D004152 ORTHO05D004878 1.4e-86 323.6 224 75.0
Medtr4g011180 Medicago truncatula HOM05D004152 ORTHO05D004878 2.4e-86 322.8 252 65.1
MELO3C005518.2 Cucumis melo HOM05D004152 ORTHO05D004878 3.2e-86 322.4 255 69.0
Phvul.010G153800 Phaseolus vulgaris HOM05D004152 ORTHO05D004878 5.4e-86 321.6 253 67.6
PGR031G2826 Punica granatum HOM05D004152 ORTHO05D004878 7.1e-86 321.2 209 77.0
Solyc06g060790.1 Solanum lycopersicum HOM05D004152 ORTHO05D004878 1.2e-85 320.5 253 66.8
CSS0047405 Camellia sinensis var. sinensis HOM05D004152 ORTHO05D004878 1.6e-85 320.1 180 86.1
Sc10g0005540 Simmondsia chinensis HOM05D004152 ORTHO05D004878 1.6e-85 320.1 255 68.6
Cpa.g.sc29.188 Carica papaya HOM05D004152 ORTHO05D004878 2.1e-85 319.7 261 66.7
Glyma.07G032200 Glycine max HOM05D004152 ORTHO05D004878 2.1e-85 319.7 234 71.8
Psat7g255640 Pisum sativum HOM05D004152 ORTHO05D004878 3.5e-85 318.9 246 68.7
arahy.Tifrunner.gnm1.ann1.HAI1EF Arachis hypogaea HOM05D004152 ORTHO05D004878 4.6e-85 318.5 255 65.9
Sed0004379 Sechium edule HOM05D004152 ORTHO05D004878 4.6e-85 318.5 261 67.0
Sopen06g020930 Solanum pennellii HOM05D004152 ORTHO05D004878 4.6e-85 318.5 252 66.7
Atru.chr9.1286 Acer truncatum HOM05D004152 ORTHO05D004878 7.8e-85 317.8 254 66.5
Aqoxy7G00694 Aquilegia oxysepala HOM05D004152 ORTHO05D004878 7.8e-85 317.8 255 67.5
THA.LOC104824129 Tarenaya hassleriana HOM05D004152 ORTHO05D004878 1.7e-84 316.6 193 81.3
Lj3g0007947 Lotus japonicus HOM05D004152 ORTHO05D004878 2.3e-84 316.2 250 66.4
TAR629G1833 Trochodendron aralioides HOM05D004152 ORTHO05D004878 2.3e-84 316.2 246 66.7
CsaV3_5G004400 Cucumis sativus L. HOM05D004152 ORTHO05D004878 3.0e-84 315.8 251 66.9
Ciclev10021871m.g Citrus clementina HOM05D004152 ORTHO05D004878 5.1e-84 315.1 252 65.9
PGSC0003DMG400024154 Solanum tuberosum HOM05D004152 ORTHO05D004878 5.1e-84 315.1 253 66.0
AUR62007107 Chenopodium quinoa HOM05D004152 ORTHO05D004878 1.5e-83 313.5 245 66.5
Oeu040710.1 Olea europaea HOM05D004152 ORTHO05D004878 1.9e-83 313.2 268 64.6
Rhsim07G0110300 Rhododendron simsii HOM05D004152 ORTHO05D004878 1.9e-83 313.2 245 68.6
Lalb_Chr25g0279491 Lupinus albus HOM05D004152 ORTHO05D004878 4.3e-83 312.0 255 66.7
SalBow6G1227 Salvia bowleyana HOM05D004152 ORTHO05D004878 9.6e-83 310.8 188 80.9
Ca_20428_v3 Cicer arietinum L. HOM05D004152 ORTHO05D004878 1.6e-82 310.1 223 68.6
Migut.A01125 Erythranthe guttata HOM05D004152 ORTHO05D004878 2.1e-82 309.7 180 84.4
SGA_v2.0_scaffold104G30172 Striga asiatica HOM05D004152 ORTHO05D004878 2.8e-82 309.3 260 66.9
AUR62019969 Chenopodium quinoa HOM05D004152 ORTHO05D004878 3.6e-82 308.9 245 65.7
Nitab4.5_0002881g0130 Nicotiana tabacum HOM05D004152 ORTHO05D004878 3.6e-82 308.9 250 65.6
BcaNung03538 Brassica carinata HOM05D004152 ORTHO05D004878 6.2e-82 308.1 262 64.9
CAN.G62.23 Capsicum annuum HOM05D004152 ORTHO05D004878 6.2e-82 308.1 178 84.8
arahy.Tifrunner.gnm1.ann1.Y2K32V Arachis hypogaea HOM05D004152 ORTHO05D004878 1.1e-81 307.4 254 63.0
DCAR_002274 Daucus carota HOM05D004152 ORTHO05D004878 1.1e-81 307.4 256 65.6
MSTRG.12117 Avicennia marina HOM05D004152 ORTHO05D004878 2.4e-81 306.2 191 80.6
Nn6g33894 Nelumbo nucifera HOM05D004152 ORTHO05D004878 5.2e-81 305.1 260 61.5
EL10Ac5g12362 Beta vulgaris HOM05D004152 ORTHO05D004878 8.9e-81 304.3 250 63.6
BraA05t19344Z Brassica rapa HOM05D004152 ORTHO05D004878 8.9e-81 304.3 260 64.2
HanXRQChr03g0088791 Helianthus annuus HOM05D004152 ORTHO05D004878 1.5e-80 303.5 257 64.2
C03p28570 Brassica napus HOM05D004152 ORTHO05D004878 2.0e-80 303.1 256 66.0
BraA03t11610Z Brassica rapa HOM05D004152 ORTHO05D004878 2.0e-80 303.1 256 64.8
BcaC02g12415 Brassica carinata HOM05D004152 ORTHO05D004878 2.6e-80 302.8 239 68.6
BolC3t15222H Brassica oleracea HOM05D004152 ORTHO05D004878 2.6e-80 302.8 256 66.0
Thhalv10017142m.g Eutrema salsugineum HOM05D004152 ORTHO05D004878 2.6e-80 302.8 260 63.8
A03p23950 Brassica napus HOM05D004152 ORTHO05D004878 3.4e-80 302.4 260 63.8
BolC4t22054H Brassica oleracea HOM05D004152 ORTHO05D004878 4.4e-80 302.0 239 68.6
Carub.0004s2557 Capsella rubella HOM05D004152 ORTHO05D004878 7.6e-80 301.2 239 66.9
HanXRQChr13g0417841 Helianthus annuus HOM05D004152 ORTHO05D004878 1.3e-79 300.4 226 69.0
CARHR138160 Cardamine hirsuta HOM05D004152 ORTHO05D004878 1.7e-79 300.1 260 63.1
Sp4g25220 Schrenkiella parvula HOM05D004152 ORTHO05D004878 1.7e-79 300.1 260 63.5
unitig_899.g15440 Utricularia gibba HOM05D004152 ORTHO05D004878 2.2e-79 299.7 231 68.4
DCAR_008502 Daucus carota HOM05D004152 ORTHO05D004878 4.9e-79 298.5 257 64.2
AL4G41740 Arabidopsis lyrata HOM05D004152 ORTHO05D004878 6.4e-79 298.1 263 64.3
ECA240G2077 Erigeron canadensis HOM05D004152 ORTHO05D004878 8.4e-79 297.7 202 73.8
PSO210G0624 Papaver somniferum HOM05D004152 ORTHO05D004878 2.4e-78 296.2 256 62.9
AT2G43090 Arabidopsis thaliana HOM05D004152 ORTHO05D004878 3.2e-78 295.8 263 63.9
Ah.12g054170 Amaranthus hybridus HOM05D004152 ORTHO05D004878 4.2e-78 295.4 251 63.3
Peaxi162Scf01022g00023 Petunia axillaris HOM05D004152 ORTHO05D004878 4.2e-78 295.4 249 65.9
PSO210G4930 Papaver somniferum HOM05D004152 ORTHO05D004878 7.1e-78 294.7 219 69.9
CARHR169410 Cardamine hirsuta HOM05D004152 ORTHO05D004878 1.6e-77 293.5 254 63.4
THA.LOC104803472 Tarenaya hassleriana HOM05D004152 ORTHO05D004878 1.0e-76 290.8 260 61.9
BcaB01g01073 Brassica carinata HOM05D004152 ORTHO05D004878 1.3e-76 290.4 227 67.0
Actinidia10839 Actinidia chinensis HOM05D004152 ORTHO05D004878 5.6e-75 285.0 234 67.5
CARHR169370 Cardamine hirsuta HOM05D004152 ORTHO05D004878 1.6e-74 283.5 239 63.6
Carub.0005s2573 Capsella rubella HOM05D004152 ORTHO05D004878 3.6e-74 282.3 183 74.9
Hund14573 Selenicereus undatus HOM05D004152 ORTHO05D004878 2.4e-73 279.6 193 71.5
AT3G58990 Arabidopsis thaliana HOM05D004152 ORTHO05D004878 5.3e-73 278.5 206 69.4
AL5G40810 Arabidopsis lyrata HOM05D004152 ORTHO05D004878 6.9e-73 278.1 209 68.4
Aa31LG1G24900 Aethionema arabicum HOM05D004152 ORTHO05D004878 1.2e-72 277.3 243 61.7
Carub.0002s0595 Capsella rubella HOM05D004152 ORTHO05D004878 1.2e-72 277.3 196 69.9
CDE11G0751 Ceratophyllum demersum HOM05D004152 ORTHO05D004878 1.2e-72 277.3 194 68.6
Aa31LG10G13480 Aethionema arabicum HOM05D004152 ORTHO05D004878 2.6e-72 276.2 259 59.5
Lsat_1_v5_gn_6_92521 Lactuca sativa HOM05D004152 ORTHO05D004878 3.4e-72 275.8 213 69.5
SEGI_19785 Sequoiadendron giganteum HOM05D004152 ORTHO05D004878 3.8e-71 272.3 204 67.6
Lj8A264G55 Lonicera japonica HOM05D004152 ORTHO05D004878 1.9e-70 270.0 169 79.9
BraA05t19345Z Brassica rapa HOM05D004152 ORTHO05D004878 7.1e-70 268.1 228 61.4
Sp4g25230 Schrenkiella parvula HOM05D004152 ORTHO05D004878 9.3e-70 267.7 256 57.8
Thhalv10017125m.g Eutrema salsugineum HOM05D004152 ORTHO05D004878 2.1e-69 266.5 221 62.0
CARHR138170 Cardamine hirsuta HOM05D004152 ORTHO05D004878 2.7e-69 266.2 263 58.9
AT2G43100 Arabidopsis thaliana HOM05D004152 ORTHO05D004878 4.6e-69 265.4 223 63.7
Mapoly0001s0104 Marchantia polymorpha HOM05D004152 ORTHO05D004878 4.6e-69 265.4 194 68.6
SMO274G0039 Selaginella moellendorffii HOM05D004152 ORTHO05D004878 7.9e-69 264.6 185 67.6
Zm00001eb249330 Zea mays HOM05D004152 ORTHO05D004878 1.0e-68 264.2 180 71.7
Aa31LG1G24910 Aethionema arabicum HOM05D004152 ORTHO05D004878 1.3e-68 263.8 201 66.7
A05p03590 Brassica napus HOM05D004152 ORTHO05D004878 1.3e-68 263.8 256 56.2
BcaC02g12414 Brassica carinata HOM05D004152 ORTHO05D004878 1.7e-68 263.5 223 61.9
C04p04150 Brassica napus HOM05D004152 ORTHO05D004878 1.7e-68 263.5 223 61.4
BolC4t22055H Brassica oleracea HOM05D004152 ORTHO05D004878 1.7e-68 263.5 223 61.4
Os02g0655300 Oryza sativa ssp. japonica HOM05D004152 ORTHO05D004878 2.3e-68 263.1 210 64.8
AL4G41750 Arabidopsis lyrata HOM05D004152 ORTHO05D004878 3.9e-68 262.3 256 57.8
BcaNung03539 Brassica carinata HOM05D004152 ORTHO05D004878 5.1e-68 261.9 224 62.1
AagrBONN_evm.TU.Sc2ySwM_228.3330 Anthoceros agrestis HOM05D004152 ORTHO05D004878 8.7e-68 261.2 210 64.3
ATR0693G400 Amborella trichopoda HOM05D004152 ORTHO05D004878 4.3e-67 258.8 230 61.7
BcaC01g05264 Brassica carinata HOM05D004152 ORTHO05D004878 9.6e-67 257.7 254 61.0
Carub.0004s2558 Capsella rubella HOM05D004152 ORTHO05D004878 2.1e-66 256.5 258 57.0
Pp3c1_29090 Physcomitrium patens HOM05D004152 ORTHO05D004878 2.8e-66 256.1 174 70.7
Pp3c14_19120 Physcomitrium patens HOM05D004152 ORTHO05D004878 1.8e-65 253.4 174 69.5
Nitab4.5_0001410g0090 Nicotiana tabacum HOM05D004152 ORTHO05D004878 9.0e-65 251.1 202 64.4
Dinv39162 Davidia involucrata HOM05D004152 ORTHO05D004878 1.2e-64 250.8 148 83.1
CDE11G0227 Ceratophyllum demersum HOM05D004152 ORTHO05D004878 7.1e-62 241.5 150 75.3
Cre06.g252650 Chlamydomonas reinhardtii HOM05D004152 ORTHO05D004878 9.3e-62 241.1 184 64.1
Gohir.A03G168700 Gossypium hirsutum HOM05D004152 ORTHO05D004878 3.5e-61 239.2 266 54.9
Cc08_g12220 Coffea canephora HOM05D004152 ORTHO05D004878 1.4e-54 217.2 208 61.5
Dinv21650 Davidia involucrata HOM05D004152 ORTHO05D004878 5.5e-54 215.3 126 84.9
SHI09309 Sapria himalayana HOM05D004152 ORTHO05D004878 2.7e-53 213.0 132 75.0
HPP92_020921 Vanilla planifolia HOM05D004152 ORTHO05D004878 4.3e-51 205.7 182 59.3
SalBow1G7183 Salvia bowleyana HOM05D004152 ORTHO05D004878 1.1e-49 201.1 204 56.9
EL10Ac5g12363 Beta vulgaris HOM05D004152 ORTHO05D004878 9.0e-49 198.0 226 49.6
Nitab4.5_0002372g0010 Nicotiana tabacum HOM05D004152 ORTHO05D004878 1.2e-48 197.6 118 83.1
Actinidia31515 Actinidia chinensis HOM05D004152 ORTHO05D004878 1.3e-47 194.1 229 53.7
Rhsim05G0121600 Rhododendron simsii HOM05D004152 ORTHO05D004878 5.0e-47 192.2 167 65.3
Lj8A267T12 Lonicera japonica HOM05D004152 ORTHO05D004878 1.1e-46 191.0 232 50.9
Carub.0005s2576 Capsella rubella HOM05D004152 ORTHO05D004878 9.3e-46 188.0 163 62.6
Sed0021243 Sechium edule HOM05D004152 ORTHO05D004878 6.7e-44 181.8 179 60.3
Lj8A266T18 Lonicera japonica HOM05D004152 ORTHO05D004878 1.9e-43 180.3 232 50.0
Oeu047732.1 Olea europaea HOM05D004152 ORTHO05D004878 4.8e-42 175.6 268 45.5
TPR.G10893 Trifolium pratense HOM05D004152 ORTHO05D004878 6.3e-42 175.3 125 72.8
Ah.12g054180 Amaranthus hybridus HOM05D004152 ORTHO05D004878 1.4e-41 174.1 198 49.5
BcaB05g25308 Brassica carinata HOM05D004152 ORTHO05D004878 2.5e-30 136.7 99 67.7
SalBow1G0783 Salvia bowleyana HOM05D001430 ORTHO05D004878 3.0e-28 129.8 103 62.1
Lsat_1_v5_gn_7_1160 Lactuca sativa HOM05D004152 ORTHO05D004878 1.1e-27 127.9 75 80.0
A05p03570 Brassica napus HOM05D000373 ORTHO05D007048 5.3e-25 119.0 80 71.2
C04p04140 Brassica napus HOM05D000373 ORTHO05D007048 5.3e-25 119.0 76 73.7
Lsat_1_v5_gn_5_55401 Lactuca sativa HOM05D004152 ORTHO05D004878 2.2e-23 113.6 90 63.3
ATR0693G063 Amborella trichopoda HOM05D004152 ORTHO05D004878 6.5e-23 112.1 129 50.4
Rhsim03G0103100 Rhododendron simsii HOM05D004152 ORTHO05D004878 3.2e-22 109.8 105 61.0
AUR62007106 Chenopodium quinoa HOM05D004152 ORTHO05D004878 4.2e-22 109.4 112 54.5
GSVIVG01007403001 Vitis vinifera HOM05D004152 ORTHO05D004878 2.4e-17 93.6 205 37.6
COL.COLO4_34273 Corchorus olitorius HOM05D004152 ORTHO05D004878 3.2e-14 83.2 154 38.3
Ah.14g083550 Amaranthus hybridus HOM05D004152 ORTHO05D004878 6.8e-12 75.5 50 76.0
Cfa024802 Carpinus fangiana HOM05D003112 ORTHO05D003660 1.7e-10 70.9 133 36.8
PRCOL_00005264 Prasinoderma coloniale HOM05D003112 ORTHO05D003660 2.4e-09 67.0 182 29.7
MCO01G562 Micromonas commoda HOM05D003112 ORTHO05D003660 5.4e-09 65.9 138 33.3
C03p28580 Brassica napus HOM05D004152 ORTHO05D004878 1.2e-08 64.7 75 41.3
BcaB01g00650 Brassica carinata HOM05D004152 ORTHO05D004878 1.0e-07 61.6 54 53.7
CsaV3_5G004360 Cucumis sativus L. HOM05D004152 ORTHO05D004878 1.7e-07 60.8 54 57.4
Cfa023744 Carpinus fangiana HOM05D003112 ORTHO05D003660 1.9e-06 57.4 159 29.6
Ca_28701_v3 Cicer arietinum L. HOM05D004152 ORTHO05D003660 3.2e-06 56.6 96 39.6


User provided reference genes

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