Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN04G0366 Fragaria x ananassa HOM05D004647 ORTHO05D005349 1.3e-157 559.7 284 100.0
FAN08G1047 Fragaria x ananassa HOM05D004647 ORTHO05D005349 6.7e-130 467.6 242 97.5
FAN18G2734 Fragaria x ananassa HOM05D004647 ORTHO05D005349 4.4e-129 464.9 241 97.1
FAN13G1078 Fragaria x ananassa HOM05D004647 ORTHO05D005349 2.8e-128 462.2 242 96.3
RcHm_v2.0_Chr7g0193601 Rosa chinensis HOM05D004647 ORTHO05D005349 2.2e-125 452.6 242 94.2
FAN18G2015 Fragaria x ananassa HOM05D004647 ORTHO05D005349 1.1e-121 440.3 296 78.7
FvH4_5g05270 Fragaria vesca HOM05D004647 ORTHO05D005349 7.7e-118 427.6 217 98.2
Prupe.5G174300 Prunus persica HOM05D004647 ORTHO05D005349 3.5e-110 402.1 232 86.2
Sabra12G0057400 Salix brachista HOM05D004647 ORTHO05D005349 1.2e-107 393.7 232 84.1
Potri.012G080300 Populus trichocarpa HOM05D004647 ORTHO05D005349 1.6e-107 393.3 234 82.9
Gohir.A03G097600 Gossypium hirsutum HOM05D004647 ORTHO05D005349 2.1e-107 392.9 232 82.3
Gorai.005G137000 Gossypium raimondii HOM05D004647 ORTHO05D005349 3.6e-107 392.1 232 82.3
GSVIVG01007738001 Vitis vinifera HOM05D004647 ORTHO05D005349 4.0e-106 388.7 236 82.6
Gohir.D02G116700 Gossypium hirsutum HOM05D004647 ORTHO05D005349 8.8e-106 387.5 232 81.5
vmacro16607 Vaccinium macrocarpon HOM05D004647 ORTHO05D005349 2.8e-104 382.5 232 80.6
Actinidia19099 Actinidia chinensis HOM05D004647 ORTHO05D005349 1.1e-103 380.6 232 81.0
Glyma.02G112000 Glycine max HOM05D004647 ORTHO05D005349 1.8e-103 379.8 229 80.3
Rhsim12G0164400 Rhododendron simsii HOM05D004647 ORTHO05D005349 9.1e-103 377.5 231 79.7
Glyma.01G053700 Glycine max HOM05D004647 ORTHO05D005349 4.5e-102 375.2 228 80.3
Phvul.003G111100 Phaseolus vulgaris HOM05D004647 ORTHO05D005349 1.0e-101 374.0 228 81.6
TPR.G19928 Trifolium pratense HOM05D004647 ORTHO05D005349 1.0e-101 374.0 228 80.3
CiPaw.11G026900 Carya illinoinensis HOM05D004647 ORTHO05D005349 1.7e-101 373.2 232 81.0
Lj5A124T65 Lonicera japonica HOM05D004647 ORTHO05D005349 2.3e-101 372.9 227 81.5
arahy.Tifrunner.gnm1.ann1.HI7WIW Arachis hypogaea HOM05D004647 ORTHO05D005349 2.9e-101 372.5 232 79.3
arahy.Tifrunner.gnm1.ann1.T8C5SJ Arachis hypogaea HOM05D004647 ORTHO05D005349 2.9e-101 372.5 232 79.3
Phvul.002G091200 Phaseolus vulgaris HOM05D004647 ORTHO05D005349 6.6e-101 371.3 230 80.0
Ciclev10021986m.g Citrus clementina HOM05D004647 ORTHO05D005349 8.6e-101 370.9 235 77.0
Hma1.2p1_0701F.1_g205920 Hydrangea macrophylla HOM05D004647 ORTHO05D005349 8.6e-101 370.9 233 79.4
Lj2g0019057 Lotus japonicus HOM05D004647 ORTHO05D005349 1.1e-100 370.5 237 77.6
COL.COLO4_30028 Corchorus olitorius HOM05D004647 ORTHO05D005349 1.9e-100 369.8 265 71.7
ATR0680G372 Amborella trichopoda HOM05D004647 ORTHO05D005349 2.5e-100 369.4 231 76.6
TPR.G14966 Trifolium pratense HOM05D004647 ORTHO05D005349 2.5e-100 369.4 228 79.4
Lalb_Chr10g0098541 Lupinus albus HOM05D004647 ORTHO05D005349 5.6e-100 368.2 227 80.2
TWI15G0781 Tripterygium wilfordii HOM05D004647 ORTHO05D005349 7.2e-100 367.9 233 79.4
ClCG06G016990 Citrullus lanatus HOM05D004647 ORTHO05D005349 1.6e-99 366.7 228 78.9
Cc04_g13970 Coffea canephora HOM05D004647 ORTHO05D005349 1.6e-99 366.7 232 78.4
DCAR_016485 Daucus carota HOM05D004647 ORTHO05D005349 2.1e-99 366.3 226 79.2
PGR083G2070 Punica granatum HOM05D004647 ORTHO05D005349 2.1e-99 366.3 232 77.2
Eucgr.B00371 Eucalyptus grandis HOM05D004647 ORTHO05D005349 4.7e-99 365.2 234 76.9
Psat2g127400 Pisum sativum HOM05D004647 ORTHO05D005349 4.7e-99 365.2 227 79.3
Atru.chr9.2461 Acer truncatum HOM05D004647 ORTHO05D005349 6.1e-99 364.8 235 75.7
TWI53G1063 Tripterygium wilfordii HOM05D004647 ORTHO05D005349 6.1e-99 364.8 233 79.8
Manes.14G066300 Manihot esculenta HOM05D004647 ORTHO05D005349 1.4e-98 363.6 211 85.3
CANSAT64G1060 Cannabis sativa HOM05D004647 ORTHO05D005349 1.8e-98 363.2 233 77.3
Medtr5g043110 Medicago truncatula HOM05D004647 ORTHO05D005349 2.3e-98 362.8 227 78.4
QL10p011820 Quercus lobata HOM05D004647 ORTHO05D005349 2.3e-98 362.8 232 78.0
Thecc.03G011300 Theobroma cacao HOM05D004647 ORTHO05D005349 3.0e-98 362.5 211 83.9
THA.LOC104807116 Tarenaya hassleriana HOM05D004647 ORTHO05D005349 4.0e-98 362.1 234 76.1
THA.LOC104824976 Tarenaya hassleriana HOM05D004647 ORTHO05D005349 4.0e-98 362.1 234 76.1
Sed0013198 Sechium edule HOM05D004647 ORTHO05D005349 6.8e-98 361.3 238 74.8
Aqoxy3G01032 Aquilegia oxysepala HOM05D004647 ORTHO05D005349 8.9e-98 360.9 227 78.4
MD06G1174300 Malus domestica HOM05D004647 ORTHO05D005349 1.2e-97 360.5 232 77.6
Carub.0004s0503 Capsella rubella HOM05D004647 ORTHO05D005349 1.5e-97 360.1 234 76.9
PSO017G4490 Papaver somniferum HOM05D004647 ORTHO05D005349 1.5e-97 360.1 232 75.9
Ca_06453_v3 Cicer arietinum L. HOM05D004647 ORTHO05D005349 2.6e-97 359.4 225 79.1
HPP92_005895 Vanilla planifolia HOM05D004647 ORTHO05D005349 2.6e-97 359.4 238 72.3
PSO478G0146 Papaver somniferum HOM05D004647 ORTHO05D005349 3.4e-97 359.0 232 75.4
CARHR059710 Cardamine hirsuta HOM05D004647 ORTHO05D005349 5.7e-97 358.2 234 76.1
Hund09433 Selenicereus undatus HOM05D004647 ORTHO05D005349 9.8e-97 357.5 232 76.3
Os01g0891400 Oryza sativa ssp. japonica HOM05D004647 ORTHO05D005349 6.4e-96 354.8 232 74.6
Sopen06g027740 Solanum pennellii HOM05D004647 ORTHO05D005349 8.3e-96 354.4 228 74.1
AT4G32175 Arabidopsis thaliana HOM05D004647 ORTHO05D005349 1.4e-95 353.6 235 75.3
Lsat_1_v5_gn_4_75321 Lactuca sativa HOM05D004647 ORTHO05D005349 3.2e-95 352.4 232 75.4
MSTRG.11448 Avicennia marina HOM05D004647 ORTHO05D005349 9.2e-95 350.9 233 73.0
MBI16_g05634_MAGBIO Magnolia biondii HOM05D004647 ORTHO05D005349 1.2e-94 350.5 237 72.6
Nitab4.5_0000003g0580 Nicotiana tabacum HOM05D004647 ORTHO05D005349 1.2e-94 350.5 228 73.7
Os01g0661400 Oryza sativa ssp. japonica HOM05D004647 ORTHO05D005349 1.2e-94 350.5 232 73.3
AL7G19680 Arabidopsis lyrata HOM05D004647 ORTHO05D005349 1.6e-94 350.1 235 74.5
HanXRQChr16g0504011 Helianthus annuus HOM05D004647 ORTHO05D005349 2.0e-94 349.7 234 73.9
Sp7g29960 Schrenkiella parvula HOM05D004647 ORTHO05D005349 2.0e-94 349.7 235 76.6
CSS0008435 Camellia sinensis var. sinensis HOM05D004647 ORTHO05D005349 2.7e-94 349.4 232 75.9
Migut.I00016 Erythranthe guttata HOM05D004647 ORTHO05D005349 2.7e-94 349.4 233 73.8
Sc10g0010060 Simmondsia chinensis HOM05D004647 ORTHO05D005349 2.7e-94 349.4 237 73.4
Solyc06g071460.3 Solanum lycopersicum HOM05D004647 ORTHO05D005349 3.5e-94 349.0 231 73.2
BcaC01g01036 Brassica carinata HOM05D004647 ORTHO05D005349 4.6e-94 348.6 239 74.1
A08p18330 Brassica napus HOM05D004647 ORTHO05D005349 4.6e-94 348.6 239 74.1
BraA08t33790Z Brassica rapa HOM05D004647 ORTHO05D005349 4.6e-94 348.6 239 74.1
PGSC0003DMG400027091 Solanum tuberosum HOM05D004647 ORTHO05D005349 4.6e-94 348.6 228 72.8
Nitab4.5_0000866g0170 Nicotiana tabacum HOM05D004647 ORTHO05D005349 5.9e-94 348.2 228 73.7
Oeu035987.1 Olea europaea HOM05D004647 ORTHO05D005349 7.8e-94 347.8 232 74.1
BolC3t21057H Brassica oleracea HOM05D004647 ORTHO05D005349 1.5e-92 343.6 239 73.2
HanXRQChr16g0526511 Helianthus annuus HOM05D004647 ORTHO05D005349 5.6e-92 341.7 236 72.5
AUR62030968 Chenopodium quinoa HOM05D004647 ORTHO05D005349 7.3e-92 341.3 231 72.3
ECA232G2959 Erigeron canadensis HOM05D004647 ORTHO05D005349 9.5e-92 340.9 227 74.0
AL4G16790 Arabidopsis lyrata HOM05D004647 ORTHO05D005349 1.2e-91 340.5 234 72.2
Thhalv10026115m.g Eutrema salsugineum HOM05D004647 ORTHO05D005349 2.1e-91 339.7 235 74.0
QL02p100995 Quercus lobata HOM05D004647 ORTHO05D005349 2.8e-91 339.3 332 56.9
TAR374G0909 Trochodendron aralioides HOM05D004647 ORTHO05D005349 3.6e-91 339.0 190 86.8
AT2G25355 Arabidopsis thaliana HOM05D004647 ORTHO05D005349 4.7e-91 338.6 234 72.2
SGA_v2.0_scaffold90G27942 Striga asiatica HOM05D004647 ORTHO05D005349 1.0e-90 337.4 256 67.6
Zm00001eb157720 Zea mays HOM05D004647 ORTHO05D005349 1.4e-90 337.0 233 71.7
BcaB03g12733 Brassica carinata HOM05D004647 ORTHO05D005349 2.3e-90 336.3 235 73.6
CAN.G628.78 Capsicum annuum HOM05D004647 ORTHO05D005349 8.9e-90 334.3 228 69.7
EL10Ac5g10752 Beta vulgaris HOM05D004647 ORTHO05D005349 1.5e-89 333.6 257 66.1
CARHR240100 Cardamine hirsuta HOM05D004647 ORTHO05D005349 6.4e-88 328.2 235 70.2
unitig_52.g17486 Utricularia gibba HOM05D004647 ORTHO05D005349 1.1e-87 327.4 233 70.8
Cpa.g.sc124.56 Carica papaya HOM05D004647 ORTHO05D005349 1.4e-87 327.0 193 81.3
AUR62008215 Chenopodium quinoa HOM05D004647 ORTHO05D005349 4.1e-87 325.5 257 64.6
DCAR_028017 Daucus carota HOM05D004647 ORTHO05D005349 1.2e-86 323.9 196 81.1
MD06G1174500 Malus domestica HOM05D004647 ORTHO05D005349 2.7e-86 322.8 234 71.4
CDE11G0116 Ceratophyllum demersum HOM05D004647 ORTHO05D005349 4.6e-86 322.0 207 73.4
SalBow3G4197 Salvia bowleyana HOM05D004647 ORTHO05D005349 1.8e-82 310.1 310 55.5
Zm00001eb157740 Zea mays HOM05D004647 ORTHO05D005349 2.3e-82 309.7 201 74.6
Peaxi162Scf00689g00228 Petunia axillaris HOM05D004647 ORTHO05D005349 1.7e-80 303.5 197 74.6
Carub.0007s0838 Capsella rubella HOM05D004647 ORTHO05D005349 1.9e-79 300.1 192 77.1
Haze_07464 Corylus avellana HOM05D004647 ORTHO05D005349 3.5e-78 295.8 232 66.8
Dinv02900 Davidia involucrata HOM05D004647 ORTHO05D005349 3.9e-77 292.4 169 82.2
CsaV3_1G001530 Cucumis sativus L. HOM05D004647 ORTHO05D005349 6.2e-75 285.0 164 83.5
Aa31LG2G17760 Aethionema arabicum HOM05D004647 ORTHO05D005349 3.4e-73 279.3 234 64.5
Pp3c9_4960 Physcomitrium patens HOM05D004647 ORTHO05D005349 1.4e-71 273.9 238 57.6
THA.LOC104801749 Tarenaya hassleriana HOM05D004647 ORTHO05D005349 2.3e-69 266.5 160 78.8
Mapoly0033s0011 Marchantia polymorpha HOM05D004647 ORTHO05D005349 3.3e-68 262.7 236 54.2
SMO358G0755 Selaginella moellendorffii HOM05D004647 ORTHO05D005349 1.1e-66 257.7 222 56.8
Nn3g16872 Nelumbo nucifera HOM05D004647 ORTHO05D005349 3.2e-63 246.1 133 86.5
THA.LOC104815465 Tarenaya hassleriana HOM05D004647 ORTHO05D005349 5.1e-61 238.8 151 76.8
AagrBONN_evm.TU.Sc2ySwM_117.3294 Anthoceros agrestis HOM05D004647 ORTHO05D005349 9.3e-55 218.0 191 57.6
MELO3C026290.2 Cucumis melo HOM05D004647 ORTHO05D005349 2.1e-54 216.9 128 82.0
SEGI_17588 Sequoiadendron giganteum HOM05D004647 ORTHO05D005349 1.4e-50 204.1 139 71.2
SEGI_39775 Sequoiadendron giganteum HOM05D004647 ORTHO05D005349 1.4e-50 204.1 139 71.2
Sed0007118 Sechium edule HOM05D004647 ORTHO05D005349 4.0e-50 202.6 181 59.1
PSO384G3338 Papaver somniferum HOM05D004647 ORTHO05D005349 2.0e-49 200.3 164 64.6
VMungo1215G1703 Vigna mungo HOM05D004647 ORTHO05D005349 4.5e-49 199.1 118 81.4
Cre07.g319900 Chlamydomonas reinhardtii HOM05D004647 ORTHO05D005349 8.4e-48 194.9 230 43.0
Zm00001eb359590 Zea mays HOM05D004647 ORTHO05D005349 1.1e-47 194.5 130 73.1
VMungo1215G3307 Vigna mungo HOM05D004647 ORTHO05D005349 3.3e-44 183.0 119 77.3
CSS0025503 Camellia sinensis var. sinensis HOM05D004647 ORTHO05D005349 5.6e-44 182.2 125 72.8
QL02p101061 Quercus lobata HOM05D004647 ORTHO05D005349 2.8e-43 179.9 119 76.5
QL02p101105 Quercus lobata HOM05D004647 ORTHO05D005349 4.8e-43 179.1 119 75.6
Medtr5g009430 Medicago truncatula HOM05D004647 ORTHO05D005349 2.9e-40 169.9 118 69.5
CBR_g61059 Chara braunii HOM05D004647 ORTHO05D005349 7.1e-39 165.2 226 42.5
Ca_07701_v3 Cicer arietinum L. HOM05D004647 ORTHO05D005349 1.2e-33 147.9 127 63.8
Glyma.19G045000 Glycine max HOM05D004647 ORTHO05D005349 3.8e-32 142.9 119 63.0
PRCOL_00002933 Prasinoderma coloniale HOM05D004647 ORTHO05D005349 1.6e-30 137.5 184 44.0
CAN.G110.1 Capsicum annuum HOM05D004647 ORTHO05D005349 2.1e-30 137.1 152 51.3
CSS0039197 Camellia sinensis var. sinensis HOM05D004647 ORTHO05D005349 3.9e-29 132.9 111 63.1
Cc00_g25260 Coffea canephora HOM05D004647 ORTHO05D005349 1.1e-28 131.3 81 79.0
Cc00_g18100 Coffea canephora HOM05D004647 ORTHO05D005349 8.2e-27 125.2 89 67.4
Oeu005668.1 Olea europaea HOM05D004647 ORTHO05D005349 8.2e-27 125.2 85 69.4
SEGI_00924 Sequoiadendron giganteum HOM05D004647 ORTHO05D005349 1.1e-26 124.8 99 62.6
SEGI_26695 Sequoiadendron giganteum HOM05D004647 ORTHO05D005349 3.1e-26 123.2 145 42.1
Ca_24957_v3 Cicer arietinum L. HOM05D004647 ORTHO05D005349 4.1e-26 122.9 106 62.3
Cfa024128 Carpinus fangiana HOM05D004647 ORTHO05D005349 5.9e-25 119.0 238 34.0
PGSC0003DMG400042364 Solanum tuberosum HOM05D004647 ORTHO05D005349 3.6e-22 109.8 91 57.1
MCO01G631 Micromonas commoda HOM05D004647 ORTHO05D005349 1.8e-21 107.5 184 34.2
Ca_22423_v3 Cicer arietinum L. HOM05D004647 ORTHO05D005349 3.7e-19 99.8 100 59.0
Cc00_g33640 Coffea canephora HOM05D004647 ORTHO05D005349 3.1e-18 96.7 51 86.3
CSS0048825 Camellia sinensis var. sinensis HOM05D004647 ORTHO05D005349 1.2e-17 94.7 54 81.5
Potri.015G075400 Populus trichocarpa HOM05D004647 ORTHO05D005349 8.5e-16 88.6 70 64.3
SEGI_09107 Sequoiadendron giganteum HOM05D004647 ORTHO05D005349 9.4e-15 85.1 53 73.6
MD14G1181100 Malus domestica HOM05D004647 ORTHO05D005349 5.3e-10 69.3 162 35.2
QL02p027014 Quercus lobata HOM05D004647 ORTHO05D005349 9.1e-10 68.6 39 82.1
QL02p024044 Quercus lobata HOM05D004647 ORTHO05D005349 1.1e-07 61.6 33 78.8
SHI17043 Sapria himalayana HOM05D004647 ORTHO05D005349 6.1e-06 55.8 30 83.3


User provided reference genes

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