Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.L02132 Eucalyptus grandis HOM05D006139 ORTHO05D007681 1.8e-69 265.8 129 100.0
Eucgr.F03241 Eucalyptus grandis HOM05D006139 ORTHO05D007681 2.4e-18 95.9 48 97.9
Prupe.1G178000 Prunus persica HOM05D006139 ORTHO05D007681 2.8e-14 82.4 48 79.2
COL.COLO4_17513 Corchorus olitorius HOM05D006139 ORTHO05D007681 1.4e-13 80.1 57 66.7
Potri.011G107400 Populus trichocarpa HOM05D006139 ORTHO05D007681 2.3e-13 79.3 48 77.1
Sabra11G0095200 Salix brachista HOM05D006139 ORTHO05D007681 2.3e-13 79.3 48 77.1
MELO3C017678.2 Cucumis melo HOM05D006139 ORTHO05D007681 4.0e-13 78.6 48 77.1
Dinv44237 Davidia involucrata HOM05D006139 ORTHO05D007681 4.0e-13 78.6 47 80.9
TWI38G2388 Tripterygium wilfordii HOM05D006139 ORTHO05D007681 4.0e-13 78.6 47 78.7
SGA_v2.0_scaffold109G31142 Striga asiatica HOM05D006139 ORTHO05D007681 6.8e-13 77.8 48 72.9
Nitab4.5_0001526g0130 Nicotiana tabacum HOM05D006139 ORTHO05D007681 8.9e-13 77.4 55 67.3
QL10p044141 Quercus lobata HOM05D006139 ORTHO05D007681 8.9e-13 77.4 48 77.1
MD13G1278700 Malus domestica HOM05D006139 ORTHO05D007681 1.5e-12 76.6 48 75.0
Sp1g15110 Schrenkiella parvula HOM05D006139 ORTHO05D007681 1.5e-12 76.6 48 72.9
Cc03_g10570 Coffea canephora HOM05D006139 ORTHO05D007681 2.0e-12 76.3 48 77.1
Nitab4.5_0001687g0050 Nicotiana tabacum HOM05D006139 ORTHO05D007681 2.0e-12 76.3 48 72.9
Ah.03g143010 Amaranthus hybridus HOM05D006139 ORTHO05D007681 2.6e-12 75.9 55 67.3
Carub.0001s1670 Capsella rubella HOM05D006139 ORTHO05D007681 3.4e-12 75.5 52 65.4
ECA246G3778 Erigeron canadensis HOM05D006139 ORTHO05D007681 3.4e-12 75.5 48 70.8
Lsat_1_v5_gn_3_24941 Lactuca sativa HOM05D006139 ORTHO05D007681 3.4e-12 75.5 47 74.5
Solyc09g098230.3 Solanum lycopersicum HOM05D006139 ORTHO05D007681 3.4e-12 75.5 48 70.8
Sopen09g036170 Solanum pennellii HOM05D006139 ORTHO05D007681 3.4e-12 75.5 48 70.8
Aa31LG7G1410 Aethionema arabicum HOM05D006139 ORTHO05D007681 4.4e-12 75.1 59 61.0
Oeu013397.2 Olea europaea HOM05D006139 ORTHO05D007681 4.4e-12 75.1 58 65.5
RcHm_v2.0_Chr4g0409801 Rosa chinensis HOM05D006139 ORTHO05D007681 4.4e-12 75.1 48 75.0
CAN.G710.40 Capsicum annuum HOM05D006139 ORTHO05D007681 5.8e-12 74.7 48 72.9
Manes.03G099000 Manihot esculenta HOM05D006139 ORTHO05D007681 5.8e-12 74.7 47 74.5
Duzib213G0841 Durio zibethinus HOM05D006139 ORTHO05D007681 9.8e-12 73.9 47 72.3
Sed0017452 Sechium edule HOM05D006139 ORTHO05D007681 9.8e-12 73.9 48 68.8
Atru.chr2.2052 Acer truncatum HOM05D006139 ORTHO05D007681 1.3e-11 73.6 47 74.5
AT1G16970 Arabidopsis thaliana HOM05D006139 ORTHO05D007681 1.3e-11 73.6 52 63.5
CsaV3_4G003770 Cucumis sativus L. HOM05D006139 ORTHO05D007681 1.3e-11 73.6 48 72.9
CiPaw.01G108300 Carya illinoinensis HOM05D006139 ORTHO05D007681 1.7e-11 73.2 44 79.5
FvH4_4g12150 Fragaria vesca HOM05D006139 ORTHO05D007681 1.7e-11 73.2 48 75.0
FAN07G2792 Fragaria x ananassa HOM05D006139 ORTHO05D007681 1.7e-11 73.2 48 75.0
Ciclev10019318m.g Citrus clementina HOM05D006139 ORTHO05D007681 2.9e-11 72.4 48 70.8
Gohir.A01G052100 Gossypium hirsutum HOM05D006139 ORTHO05D007681 2.9e-11 72.4 47 72.3
Hma1.2p1_0412F.1_g147150 Hydrangea macrophylla HOM05D006139 ORTHO05D007681 3.7e-11 72.0 47 76.6
FAN12G2778 Fragaria x ananassa HOM05D006139 ORTHO05D007681 4.9e-11 71.6 48 72.9
Gohir.D01G041500 Gossypium hirsutum HOM05D006139 ORTHO05D007681 4.9e-11 71.6 47 72.3
THA.LOC104812308 Tarenaya hassleriana HOM05D006139 ORTHO05D007681 4.9e-11 71.6 48 66.7
BcaC05g25552 Brassica carinata HOM05D006139 ORTHO05D007681 6.4e-11 71.2 48 64.6
C05p15280 Brassica napus HOM05D006139 ORTHO05D007681 6.4e-11 71.2 48 66.7
BolC5t30234H Brassica oleracea HOM05D006139 ORTHO05D007681 6.4e-11 71.2 48 64.6
Thhalv10007085m.g Eutrema salsugineum HOM05D006139 ORTHO05D007681 6.4e-11 71.2 48 64.6
PGR031G2404 Punica granatum HOM05D006139 ORTHO05D007681 6.4e-11 71.2 48 72.9
Rhsim07G0086500 Rhododendron simsii HOM05D006139 ORTHO05D007681 6.4e-11 71.2 43 76.7
FAN12G0395 Fragaria x ananassa HOM05D006139 ORTHO05D007681 8.3e-11 70.9 44 79.5
Migut.N00440 Erythranthe guttata HOM05D006139 ORTHO05D007681 1.1e-10 70.5 48 70.8
BcaB02g06659 Brassica carinata HOM05D006139 ORTHO05D007681 1.4e-10 70.1 48 62.5
A06p12870 Brassica napus HOM05D006139 ORTHO05D007681 1.4e-10 70.1 48 62.5
BraA06t24447Z Brassica rapa HOM05D006139 ORTHO05D007681 1.4e-10 70.1 48 62.5
CSS0045945 Camellia sinensis var. sinensis HOM05D006139 ORTHO05D007681 1.4e-10 70.1 42 78.6
AUR62018029 Chenopodium quinoa HOM05D006139 ORTHO05D007681 1.9e-10 69.7 48 70.8
CARHR017480 Cardamine hirsuta HOM05D006139 ORTHO05D007681 3.2e-10 68.9 48 64.6
Thecc.07G123700 Theobroma cacao HOM05D006139 ORTHO05D007681 3.2e-10 68.9 47 68.1
GSVIVG01031668001 Vitis vinifera HOM05D006139 ORTHO05D007681 5.4e-10 68.2 44 75.0
FAN17G0552 Fragaria x ananassa HOM05D006139 ORTHO05D007681 7.0e-10 67.8 44 75.0
TAR365G1167 Trochodendron aralioides HOM05D006139 ORTHO05D007681 7.0e-10 67.8 43 79.1
Gorai.002G052100 Gossypium raimondii HOM05D006139 ORTHO05D007681 9.2e-10 67.4 46 69.6
FAN22G0061 Fragaria x ananassa HOM05D006139 ORTHO05D007681 2.7e-09 65.9 44 79.5
Sc22g0003230 Simmondsia chinensis HOM05D006139 ORTHO05D007681 3.5e-09 65.5 43 74.4
Lalb_Chr06g0164661 Lupinus albus HOM05D006139 ORTHO05D007681 2.3e-08 62.8 48 64.6
Hund19684 Selenicereus undatus HOM05D006139 ORTHO05D007681 2.3e-08 62.8 46 63.0
arahy.Tifrunner.gnm1.ann1.46LBLY Arachis hypogaea HOM05D006139 ORTHO05D007681 3.0e-08 62.4 51 60.8
arahy.Tifrunner.gnm1.ann1.JAL8JD Arachis hypogaea HOM05D006139 ORTHO05D007681 3.0e-08 62.4 51 60.8
Glyma.20G248800 Glycine max HOM05D006139 ORTHO05D007681 3.9e-08 62.0 53 66.0
Lj5g0023092 Lotus japonicus HOM05D006139 ORTHO05D007681 8.6e-08 60.8 49 59.2
CANSAT11G1108 Cannabis sativa HOM05D006139 ORTHO05D007681 1.1e-07 60.5 47 57.4
Aqoxy2G03950 Aquilegia oxysepala HOM05D006139 ORTHO05D007681 1.5e-07 60.1 43 69.8
Ca_11423_v3 Cicer arietinum L. HOM05D006139 ORTHO05D007681 1.5e-07 60.1 48 62.5
PSO675G6876 Papaver somniferum HOM05D006139 ORTHO05D007681 1.5e-07 60.1 44 61.4
MSTRG.17865 Avicennia marina HOM05D006139 ORTHO05D007681 1.9e-07 59.7 68 48.5
MBI07_g00628_MAGBIO Magnolia biondii HOM05D006139 ORTHO05D007681 1.9e-07 59.7 42 64.3
PSO017G2886 Papaver somniferum HOM05D006139 ORTHO05D007681 4.3e-07 58.5 44 59.1
ATR0609G005 Amborella trichopoda HOM05D006139 ORTHO05D007681 7.3e-07 57.8 43 60.5
VMungo0720G1636 Vigna mungo HOM05D006139 ORTHO05D007681 2.1e-06 56.2 49 65.3
Phvul.007G001600 Phaseolus vulgaris HOM05D006139 ORTHO05D007681 3.6e-06 55.5 49 61.2
Zm00001eb116810 Zea mays HOM05D006139 ORTHO05D007681 3.6e-06 55.5 43 60.5


User provided reference genes

Program Settings