Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.L01729 Eucalyptus grandis HOM05D006350 ORTHO05D007850 1.0e-204 716.5 354 100.0
Eucgr.D00813 Eucalyptus grandis HOM05D006350 ORTHO05D007850 1.6e-184 649.4 453 76.4
PGR004G2689 Punica granatum HOM05D006350 ORTHO05D007850 6.6e-127 458.0 462 53.7
Ciclev10014587m.g Citrus clementina HOM05D006350 ORTHO05D007850 4.3e-110 402.1 453 49.4
Glyma.04G064300 Glycine max HOM05D006350 ORTHO05D007850 4.8e-109 398.7 453 48.6
Phvul.002G048900 Phaseolus vulgaris HOM05D006350 ORTHO05D007850 8.2e-109 397.9 458 48.3
VMungo1215G2459 Vigna mungo HOM05D006350 ORTHO05D007850 9.0e-108 394.4 461 47.3
Thecc.06G214100 Theobroma cacao HOM05D006350 ORTHO05D007850 1.7e-106 390.2 458 48.9
Atru.chr10.2148 Acer truncatum HOM05D006350 ORTHO05D007850 2.2e-106 389.8 454 48.2
CiPaw.09G087000 Carya illinoinensis HOM05D006350 ORTHO05D007850 2.2e-106 389.8 463 47.5
Ca_07431_v3 Cicer arietinum L. HOM05D006350 ORTHO05D007850 3.2e-105 386.0 454 48.0
arahy.Tifrunner.gnm1.ann1.SC0FBD Arachis hypogaea HOM05D006350 ORTHO05D007850 4.2e-105 385.6 455 46.2
TWI63G1388 Tripterygium wilfordii HOM05D006350 ORTHO05D007850 7.1e-105 384.8 454 47.1
MD10G1314700 Malus domestica HOM05D006350 ORTHO05D007850 9.3e-105 384.4 471 47.1
Manes.17G035000 Manihot esculenta HOM05D006350 ORTHO05D007850 1.2e-104 384.0 464 47.2
Dinv20017 Davidia involucrata HOM05D006350 ORTHO05D007850 6.0e-104 381.7 458 46.3
COL.COLO4_31726 Corchorus olitorius HOM05D006350 ORTHO05D007850 1.3e-103 380.6 454 48.0
arahy.Tifrunner.gnm1.ann1.QV9JTX Arachis hypogaea HOM05D006350 ORTHO05D007850 2.3e-103 379.8 495 43.8
TPR.G10193 Trifolium pratense HOM05D006350 ORTHO05D007850 3.0e-103 379.4 460 47.0
QL93p0073_0722 Quercus lobata HOM05D006350 ORTHO05D007850 1.1e-102 377.5 462 45.5
Gorai.011G016800 Gossypium raimondii HOM05D006350 ORTHO05D007850 2.5e-102 376.3 463 47.3
RcHm_v2.0_Chr5g0003961 Rosa chinensis HOM05D006350 ORTHO05D007850 2.5e-102 376.3 462 46.8
Gohir.D10G015200 Gossypium hirsutum HOM05D006350 ORTHO05D007850 3.3e-102 375.9 463 47.3
QL05p075148 Quercus lobata HOM05D006350 ORTHO05D007850 3.3e-102 375.9 462 45.5
Gohir.A10G015200 Gossypium hirsutum HOM05D006350 ORTHO05D007850 9.7e-102 374.4 463 47.1
ClCG01G022180 Citrullus lanatus HOM05D006350 ORTHO05D007850 2.8e-101 372.9 455 47.5
MELO3C007370.2 Cucumis melo HOM05D006350 ORTHO05D007850 8.2e-101 371.3 457 47.3
Medtr7g050860 Medicago truncatula HOM05D006350 ORTHO05D007850 8.2e-101 371.3 454 45.4
GSVIVG01012630001 Vitis vinifera HOM05D006350 ORTHO05D007850 1.4e-100 370.5 483 45.3
THA.LOC104821036 Tarenaya hassleriana HOM05D006350 ORTHO05D007850 2.4e-100 369.8 456 46.3
FAN21G3377 Fragaria x ananassa HOM05D006350 ORTHO05D007850 3.1e-100 369.4 456 46.7
CANSAT80G1390 Cannabis sativa HOM05D006350 ORTHO05D007850 4.1e-100 369.0 475 44.8
Prupe.4G026100 Prunus persica HOM05D006350 ORTHO05D007850 4.1e-100 369.0 479 45.5
AUR62012643 Chenopodium quinoa HOM05D006350 ORTHO05D007850 2.0e-99 366.7 477 44.7
CsaV3_6G049260 Cucumis sativus L. HOM05D006350 ORTHO05D007850 7.6e-99 364.8 457 46.4
AUR62022012 Chenopodium quinoa HOM05D006350 ORTHO05D007850 1.0e-98 364.4 477 43.8
TAR629G2651 Trochodendron aralioides HOM05D006350 ORTHO05D007850 3.8e-98 362.5 480 43.8
SGA_v2.0_scaffold114G32022 Striga asiatica HOM05D006350 ORTHO05D007850 4.2e-97 359.0 452 44.0
Lj1g0012123 Lotus japonicus HOM05D006350 ORTHO05D007850 1.2e-96 357.5 453 45.5
AL6G25990 Arabidopsis lyrata HOM05D006350 ORTHO05D007850 3.6e-96 355.9 456 45.6
FvH4_3g02650 Fragaria vesca HOM05D006350 ORTHO05D007850 1.4e-95 354.0 457 44.9
Potri.004G022500 Populus trichocarpa HOM05D006350 ORTHO05D007850 1.4e-95 354.0 454 44.9
Sopen03g005680 Solanum pennellii HOM05D006350 ORTHO05D007850 1.8e-95 353.6 458 44.3
PGSC0003DMG400024073 Solanum tuberosum HOM05D006350 ORTHO05D007850 1.8e-95 353.6 461 44.7
CSS0007285 Camellia sinensis var. sinensis HOM05D006350 ORTHO05D007850 8.8e-95 351.3 468 42.3
CSS0026996 Camellia sinensis var. sinensis HOM05D006350 ORTHO05D007850 8.8e-95 351.3 468 42.3
ECA248G2377 Erigeron canadensis HOM05D006350 ORTHO05D007850 2.5e-94 349.7 458 44.8
Thhalv10012972m.g Eutrema salsugineum HOM05D006350 ORTHO05D007850 3.3e-94 349.4 457 43.3
Solyc03g031820.4 Solanum lycopersicum HOM05D006350 ORTHO05D007850 5.7e-94 348.6 458 44.1
DCAR_008125 Daucus carota HOM05D006350 ORTHO05D007850 1.7e-93 347.1 456 44.1
BcaB01g05074 Brassica carinata HOM05D006350 ORTHO05D007850 4.8e-93 345.5 441 44.0
AT5G15170 Arabidopsis thaliana HOM05D006350 ORTHO05D007850 1.8e-92 343.6 456 43.2
Carub.0006s1334 Capsella rubella HOM05D006350 ORTHO05D007850 1.8e-92 343.6 456 44.1
Hund23514 Selenicereus undatus HOM05D006350 ORTHO05D007850 5.3e-92 342.0 483 43.7
HanXRQChr16g0504561 Helianthus annuus HOM05D006350 ORTHO05D007850 2.6e-91 339.7 458 42.4
Rhsim02G0112000 Rhododendron simsii HOM05D006350 ORTHO05D007850 2.6e-91 339.7 470 43.2
Duzib160G0024 Durio zibethinus HOM05D006350 ORTHO05D007850 7.7e-91 338.2 426 47.2
Aa31LG11G14390 Aethionema arabicum HOM05D006350 ORTHO05D007850 1.3e-90 337.4 454 44.5
Migut.M01281 Erythranthe guttata HOM05D006350 ORTHO05D007850 1.7e-90 337.0 468 40.6
Sp6g28900 Schrenkiella parvula HOM05D006350 ORTHO05D007850 2.9e-90 336.3 456 43.0
CAN.G404.6 Capsicum annuum HOM05D006350 ORTHO05D007850 3.8e-90 335.9 461 42.5
Nitab4.5_0000091g0460 Nicotiana tabacum HOM05D006350 ORTHO05D007850 3.8e-90 335.9 454 43.8
BolC3t13297H Brassica oleracea HOM05D006350 ORTHO05D007850 8.5e-90 334.7 451 41.9
Nitab4.5_0002613g0020 Nicotiana tabacum HOM05D006350 ORTHO05D007850 1.9e-89 333.6 444 44.1
A03p07020 Brassica napus HOM05D006350 ORTHO05D007850 2.5e-89 333.2 451 42.8
Aqoxy4G01993 Aquilegia oxysepala HOM05D006350 ORTHO05D007850 3.2e-89 332.8 455 41.8
Psat3g152760 Pisum sativum HOM05D006350 ORTHO05D007850 4.2e-89 332.4 423 45.6
MBI02_g10104_MAGBIO Magnolia biondii HOM05D006350 ORTHO05D007850 1.2e-88 330.9 480 41.2
C03p08000 Brassica napus HOM05D006350 ORTHO05D007850 1.6e-88 330.5 451 42.4
MSTRG.15966 Avicennia marina HOM05D006350 ORTHO05D007850 3.6e-88 329.3 461 41.6
Sabra04G0012300 Salix brachista HOM05D006350 ORTHO05D007850 3.0e-87 326.2 472 41.9
Peaxi162Scf00521g00815 Petunia axillaris HOM05D006350 ORTHO05D007850 5.1e-87 325.5 443 43.6
vmacro15831 Vaccinium macrocarpon HOM05D006350 ORTHO05D007850 2.6e-86 323.2 564 36.9
PSO675G5568 Papaver somniferum HOM05D006350 ORTHO05D007850 3.3e-86 322.8 478 41.2
FAN25G1413 Fragaria x ananassa HOM05D006350 ORTHO05D007850 2.2e-85 320.1 422 45.7
CDE05G1739 Ceratophyllum demersum HOM05D006350 ORTHO05D007850 3.7e-85 319.3 466 41.2
PSO541G3631 Papaver somniferum HOM05D006350 ORTHO05D007850 4.8e-85 318.9 478 41.0
EL10Ac8g19892 Beta vulgaris HOM05D006350 ORTHO05D007850 2.4e-84 316.6 494 39.1
unitig_748.g7139 Utricularia gibba HOM05D006350 ORTHO05D007850 5.9e-83 312.0 449 40.5
Lalb_Chr09g0319631 Lupinus albus HOM05D006350 ORTHO05D007850 2.9e-82 309.7 453 39.5
Lsat_1_v5_gn_1_127601 Lactuca sativa HOM05D006350 ORTHO05D000125 3.2e-81 306.2 429 42.7
Dinv17832 Davidia involucrata HOM05D006350 ORTHO05D007850 7.2e-81 305.1 418 43.5
Haze_08403 Corylus avellana HOM05D006350 ORTHO05D007850 9.4e-81 304.7 429 41.0
Lj1A1225T76 Lonicera japonica HOM05D006350 ORTHO05D007850 5.7e-78 295.4 455 39.3
Os07g0530100 Oryza sativa ssp. japonica HOM05D006350 ORTHO05D007850 2.2e-77 293.5 477 37.1
Zm00001eb323120 Zea mays HOM05D006350 ORTHO05D007850 2.2e-77 293.5 474 38.0
ATR0109G008 Amborella trichopoda HOM05D006350 ORTHO05D007850 3.8e-74 282.7 480 37.5
Cpa.g.sc198.9 Carica papaya HOM05D006350 ORTHO05D007850 7.2e-73 278.5 367 42.8
CARHR198140 Cardamine hirsuta HOM05D006350 ORTHO05D007850 1.7e-69 267.3 395 39.5
Sed0019871 Sechium edule HOM05D006350 ORTHO05D007850 3.7e-69 266.2 321 47.4
Oeu051224.2 Olea europaea HOM05D006350 ORTHO05D007850 7.7e-67 258.5 399 40.9
Sc05g0008900 Simmondsia chinensis HOM05D006350 ORTHO05D007850 5.0e-66 255.8 292 47.9
Cc02_g11700 Coffea canephora HOM05D006350 ORTHO05D007850 1.8e-52 210.7 129 75.2
SEGI_36047 Sequoiadendron giganteum HOM05D006350 ORTHO05D007850 1.2e-51 208.0 445 32.6
Pp3c10_12100 Physcomitrium patens HOM05D006350 ORTHO05D007850 3.6e-48 196.4 501 28.7
Cc02_g11710 Coffea canephora HOM05D006350 ORTHO05D007850 1.5e-46 191.0 239 45.2
Nn1g03636 Nelumbo nucifera HOM05D006350 ORTHO05D007850 2.9e-45 186.8 359 34.8
SMO117G0269 Selaginella moellendorffii HOM05D006350 ORTHO05D007850 1.4e-44 184.5 277 40.1
HPP92_017615 Vanilla planifolia HOM05D006350 ORTHO05D007850 9.2e-44 181.8 118 71.2
Hund21371 Selenicereus undatus HOM05D006350 ORTHO05D007850 7.8e-43 178.7 119 68.1
Hund21368 Selenicereus undatus HOM05D006350 ORTHO05D007850 5.0e-42 176.0 119 67.2
Mapoly0129s0047 Marchantia polymorpha HOM05D006350 ORTHO05D007850 7.3e-41 172.2 491 27.1
MBI04_g30799_MAGBIO Magnolia biondii HOM05D006350 ORTHO05D007850 1.4e-39 167.9 118 66.9
HPP92_017616 Vanilla planifolia HOM05D006350 ORTHO05D007850 1.7e-29 134.4 253 34.0
Sc05g0008890 Simmondsia chinensis HOM05D006350 ORTHO05D007850 6.2e-24 115.9 142 49.3
Nn1g00065 Nelumbo nucifera HOM05D006350 ORTHO05D007850 1.2e-22 111.7 149 40.3
CBR_g28581 Chara braunii HOM05D000019 ORTHO05D000048 4.3e-17 93.2 92 48.9
MCO12G349 Micromonas commoda HOM05D006350 ORTHO05D007850 4.0e-15 86.7 126 37.3
SMO172G0198 Selaginella moellendorffii HOM05D006350 ORTHO05D007850 6.4e-13 79.3 303 26.1
Nn1g07027 Nelumbo nucifera HOM05D006350 ORTHO05D007850 3.9e-10 70.1 65 47.7
VMungo1383G3417 Vigna mungo HOM05D006350 ORTHO05D007850 8.7e-10 68.9 168 28.6
PRCOL_00001871 Prasinoderma coloniale HOM05D006350 ORTHO05D007850 7.3e-09 65.9 136 28.7
arahy.Tifrunner.gnm1.ann1.PQF71L Arachis hypogaea HOM05D004293 ORTHO05D007850 1.8e-07 61.2 65 46.2


User provided reference genes

Program Settings