Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.K03560 Eucalyptus grandis HOM05D004146 ORTHO05D004843 2.5e-248 861.7 448 100.0
PGR083G0515 Punica granatum HOM05D004146 ORTHO05D004843 2.6e-200 702.2 450 81.6
QL12p018794 Quercus lobata HOM05D004146 ORTHO05D004843 2.2e-199 699.1 452 81.4
Thecc.01G319000 Theobroma cacao HOM05D004146 ORTHO05D004843 5.3e-198 694.5 452 80.3
Dinv12116 Davidia involucrata HOM05D004146 ORTHO05D004843 5.9e-197 691.0 451 80.0
Ciclev10020117m.g Citrus clementina HOM05D004146 ORTHO05D004843 2.9e-196 688.7 453 78.8
Gohir.D08G141300 Gossypium hirsutum HOM05D004146 ORTHO05D004843 4.2e-195 684.9 453 78.6
Gorai.004G145300 Gossypium raimondii HOM05D004146 ORTHO05D004843 1.2e-194 683.3 456 78.3
Gohir.A08G120400 Gossypium hirsutum HOM05D004146 ORTHO05D004843 3.6e-194 681.8 456 78.1
Atru.chr5.940 Acer truncatum HOM05D004146 ORTHO05D004843 2.3e-193 679.1 453 78.8
TWI14G0575 Tripterygium wilfordii HOM05D004146 ORTHO05D004843 3.0e-193 678.7 450 78.7
Manes.05G012300 Manihot esculenta HOM05D004146 ORTHO05D004843 5.7e-192 674.5 451 77.6
COL.COLO4_23187 Corchorus olitorius HOM05D004146 ORTHO05D004843 2.2e-191 672.5 446 78.9
Potri.014G117400 Populus trichocarpa HOM05D004146 ORTHO05D004843 8.2e-191 670.6 452 77.0
CiPaw.08G086700 Carya illinoinensis HOM05D004146 ORTHO05D004843 7.7e-189 664.1 453 77.9
Rhsim13G0002300 Rhododendron simsii HOM05D004146 ORTHO05D004843 2.2e-188 662.5 452 77.2
EL10As5g23605 Beta vulgaris HOM05D004146 ORTHO05D004843 3.2e-187 658.7 446 77.1
Cpa.g.sc18.100 Carica papaya HOM05D004146 ORTHO05D004843 5.5e-187 657.9 452 77.7
GSVIVG01028167001 Vitis vinifera HOM05D004146 ORTHO05D004843 7.2e-187 657.5 451 76.9
TWI23G0480 Tripterygium wilfordii HOM05D004146 ORTHO05D004843 1.6e-186 656.4 452 76.1
CSS0038119 Camellia sinensis var. sinensis HOM05D004146 ORTHO05D004843 2.1e-186 656.0 452 76.5
Sabra14G0087100 Salix brachista HOM05D004146 ORTHO05D004843 2.1e-186 656.0 460 75.0
CSS0021664 Camellia sinensis var. sinensis HOM05D004146 ORTHO05D004843 8.0e-186 654.1 451 76.3
Actinidia17925 Actinidia chinensis HOM05D004146 ORTHO05D004843 1.0e-185 653.7 452 77.2
CANSAT80G2876 Cannabis sativa HOM05D004146 ORTHO05D004843 1.0e-185 653.7 454 75.8
Dinv39081 Davidia involucrata HOM05D004146 ORTHO05D004843 1.2e-184 650.2 487 72.7
AUR62024599 Chenopodium quinoa HOM05D004146 ORTHO05D004843 4.4e-184 648.3 446 74.9
vmacro02380 Vaccinium macrocarpon HOM05D004146 ORTHO05D004843 7.5e-184 647.5 458 76.0
Nn2g12083 Nelumbo nucifera HOM05D004146 ORTHO05D004843 8.3e-183 644.0 451 75.8
CSS0047407 Camellia sinensis var. sinensis HOM05D004146 ORTHO05D004843 1.8e-182 642.9 451 75.2
Sopen01g030990 Solanum pennellii HOM05D004146 ORTHO05D004843 5.9e-181 637.9 451 74.9
CsaV3_7G030200 Cucumis sativus L. HOM05D004146 ORTHO05D004843 1.3e-180 636.7 451 74.3
Duzib211G0108 Durio zibethinus HOM05D004146 ORTHO05D004843 1.3e-180 636.7 418 78.0
Phvul.001G214900 Phaseolus vulgaris HOM05D004146 ORTHO05D004843 2.3e-180 636.0 450 74.4
Duzib211G0650 Durio zibethinus HOM05D004146 ORTHO05D004843 8.6e-180 634.0 452 74.6
PGSC0003DMG400009054 Solanum tuberosum HOM05D004146 ORTHO05D004843 1.1e-179 633.6 451 74.5
Cc01_g21680 Coffea canephora HOM05D004146 ORTHO05D004843 1.9e-179 632.9 464 74.8
Sed0005540 Sechium edule HOM05D004146 ORTHO05D004843 1.9e-179 632.9 451 73.6
MELO3C015904.2 Cucumis melo HOM05D004146 ORTHO05D004843 4.2e-179 631.7 451 73.8
FAN23G2063 Fragaria x ananassa HOM05D004146 ORTHO05D004843 4.2e-179 631.7 451 74.5
VMungo1383G2606 Vigna mungo HOM05D004146 ORTHO05D004843 4.2e-179 631.7 450 74.4
arahy.Tifrunner.gnm1.ann1.E9GQEB Arachis hypogaea HOM05D004146 ORTHO05D004843 7.2e-179 630.9 453 75.1
arahy.Tifrunner.gnm1.ann1.BI9FA3 Arachis hypogaea HOM05D004146 ORTHO05D004843 9.5e-179 630.6 453 75.1
MSTRG.21711 Avicennia marina HOM05D004146 ORTHO05D004843 1.2e-178 630.2 454 74.4
Sc24g0004180 Simmondsia chinensis HOM05D004146 ORTHO05D004843 1.6e-178 629.8 449 73.9
SGA_v2.0_scaffold376G50305 Striga asiatica HOM05D004146 ORTHO05D004843 1.6e-178 629.8 450 74.2
FvH4_1g26770 Fragaria vesca HOM05D004146 ORTHO05D004843 3.6e-178 628.6 451 74.1
RcHm_v2.0_Chr3g0486991 Rosa chinensis HOM05D004146 ORTHO05D004843 4.7e-178 628.2 451 74.1
Lj5g0012537 Lotus japonicus HOM05D004146 ORTHO05D004843 1.4e-177 626.7 450 73.6
TAR633G1592 Trochodendron aralioides HOM05D004146 ORTHO05D004843 1.5e-176 623.2 451 72.9
CAN.G293.4 Capsicum annuum HOM05D004146 ORTHO05D004843 1.3e-175 620.2 449 73.1
MD01G1004200 Malus domestica HOM05D004146 ORTHO05D004843 1.7e-175 619.8 452 73.5
FAN28G1198 Fragaria x ananassa HOM05D004146 ORTHO05D004843 1.4e-174 616.7 464 71.8
Glyma.19G218500 Glycine max HOM05D004146 ORTHO05D004843 1.8e-174 616.3 449 73.1
FAN19G1384 Fragaria x ananassa HOM05D004146 ORTHO05D004843 5.4e-174 614.8 461 71.8
Migut.D00054 Erythranthe guttata HOM05D004146 ORTHO05D004843 2.3e-172 609.4 452 72.6
Lalb_Chr04g0260041 Lupinus albus HOM05D004146 ORTHO05D004843 3.8e-172 608.6 449 71.9
Psat3g019080 Pisum sativum HOM05D004146 ORTHO05D004843 5.0e-172 608.2 451 71.8
Medtr7g109870 Medicago truncatula HOM05D004146 ORTHO05D004843 3.3e-171 605.5 454 71.6
Glyma.03G221500 Glycine max HOM05D004146 ORTHO05D004843 4.3e-171 605.1 458 71.4
MD15G1342700 Malus domestica HOM05D004146 ORTHO05D004843 3.6e-170 602.1 456 71.9
Aa31LG1G28520 Aethionema arabicum HOM05D004146 ORTHO05D004843 6.1e-170 601.3 450 70.7
Ca_09227_v3 Cicer arietinum L. HOM05D004146 ORTHO05D004843 6.1e-170 601.3 469 68.9
ECA236G0429 Erigeron canadensis HOM05D004146 ORTHO05D004843 6.1e-170 601.3 455 71.9
Prupe.3G006800 Prunus persica HOM05D004146 ORTHO05D004843 6.1e-170 601.3 394 78.7
THA.LOC104802140 Tarenaya hassleriana HOM05D004146 ORTHO05D004843 8.0e-170 600.9 466 70.2
ClCG09G004890 Citrullus lanatus HOM05D004146 ORTHO05D004843 1.0e-169 600.5 503 65.8
HPP92_024389 Vanilla planifolia HOM05D004146 ORTHO05D004843 1.4e-169 600.1 449 70.8
Solyc01g079210.3 Solanum lycopersicum HOM05D004146 ORTHO05D004843 5.2e-169 598.2 425 74.4
arahy.Tifrunner.gnm1.ann1.F4ZKGQ Arachis hypogaea HOM05D004146 ORTHO05D004843 8.9e-169 597.4 449 72.2
arahy.Tifrunner.gnm1.ann1.TWIF5Z Arachis hypogaea HOM05D004146 ORTHO05D004843 1.2e-168 597.0 449 72.2
Lj1C336G0 Lonicera japonica HOM05D004146 ORTHO05D004843 9.8e-168 594.0 452 72.1
Lalb_Chr18g0046551 Lupinus albus HOM05D004146 ORTHO05D004843 9.8e-168 594.0 451 71.8
CARHR142600 Cardamine hirsuta HOM05D004146 ORTHO05D004843 1.3e-167 593.6 451 70.1
Thhalv10001452m.g Eutrema salsugineum HOM05D004146 ORTHO05D004843 1.3e-167 593.6 450 70.9
Peaxi162Scf00770g00128 Petunia axillaris HOM05D004146 ORTHO05D004843 2.9e-167 592.4 443 72.0
HanXRQChr06g0168071 Helianthus annuus HOM05D004146 ORTHO05D004843 1.4e-166 590.1 428 73.1
Lalb_Chr06g0167021 Lupinus albus HOM05D004146 ORTHO05D004843 1.9e-166 589.7 450 72.0
ATR0564G334 Amborella trichopoda HOM05D004146 ORTHO05D004843 5.4e-166 588.2 452 70.8
PSO210G5259 Papaver somniferum HOM05D004146 ORTHO05D004843 2.7e-165 585.9 448 70.1
Lj1g0001654 Lotus japonicus HOM05D004146 ORTHO05D004843 7.8e-165 584.3 450 68.7
TPR.G4037 Trifolium pratense HOM05D004146 ORTHO05D004843 1.0e-164 583.9 452 69.5
AL4G46770 Arabidopsis lyrata HOM05D004146 ORTHO05D004843 1.3e-164 583.6 450 69.6
AT2G47210 Arabidopsis thaliana HOM05D004146 ORTHO05D004843 2.3e-164 582.8 450 69.3
Nitab4.5_0000222g0120 Nicotiana tabacum HOM05D004146 ORTHO05D004843 3.9e-164 582.0 414 72.9
Sp4g29200 Schrenkiella parvula HOM05D004146 ORTHO05D004843 3.9e-164 582.0 450 69.3
TPR.G38442 Trifolium pratense HOM05D004146 ORTHO05D004843 3.9e-164 582.0 451 69.8
CDE10G1142 Ceratophyllum demersum HOM05D004146 ORTHO05D004843 6.6e-164 581.3 451 68.3
BolC4t21705H Brassica oleracea HOM05D004146 ORTHO05D004843 2.1e-162 576.2 450 68.9
TAR362G0580 Trochodendron aralioides HOM05D004146 ORTHO05D004843 3.6e-162 575.5 409 75.8
BcaC02g12586 Brassica carinata HOM05D004146 ORTHO05D004843 4.7e-162 575.1 450 68.7
C04p00700 Brassica napus HOM05D004146 ORTHO05D004843 8.0e-162 574.3 450 68.7
BcaB02g08794 Brassica carinata HOM05D004146 ORTHO05D004843 3.1e-161 572.4 450 68.2
PSO761G0652 Papaver somniferum HOM05D004146 ORTHO05D004843 5.2e-161 571.6 452 69.0
BcaB06g29458 Brassica carinata HOM05D004146 ORTHO05D004843 1.5e-160 570.1 453 68.2
Carub.0004s2995 Capsella rubella HOM05D004146 ORTHO05D004843 3.7e-159 565.5 450 67.3
Aqoxy2G00845 Aquilegia oxysepala HOM05D004146 ORTHO05D004843 8.3e-159 564.3 452 68.8
Actinidia21373 Actinidia chinensis HOM05D004146 ORTHO05D004843 5.4e-158 561.6 446 69.5
BraA05t19061Z Brassica rapa HOM05D004146 ORTHO05D004843 2.1e-157 559.7 480 64.2
Carub.0004s2994 Capsella rubella HOM05D004146 ORTHO05D004843 4.6e-157 558.5 450 66.4
BraSC79t46677Z Brassica rapa HOM05D004146 ORTHO05D004843 1.7e-156 556.6 453 66.7
Os05g0540800 Oryza sativa ssp. japonica HOM05D004146 ORTHO05D004843 3.9e-156 555.4 450 67.1
C04p72630 Brassica napus HOM05D004146 ORTHO05D004843 8.6e-156 554.3 454 67.2
BcaC02g06965 Brassica carinata HOM05D004146 ORTHO05D004843 1.9e-155 553.1 454 67.0
Lsat_1_v5_gn_0_33621 Lactuca sativa HOM05D004146 ORTHO05D004843 3.6e-154 548.9 461 67.5
Zm00001eb235700 Zea mays HOM05D004146 ORTHO05D004843 5.2e-153 545.0 451 66.5
A04p34860 Brassica napus HOM05D004146 ORTHO05D004843 3.4e-152 542.3 479 63.0
MBI19_g36749_MAGBIO Magnolia biondii HOM05D004146 ORTHO05D004843 2.2e-151 539.7 451 69.2
Hma1.2p1_0965F.1_g242130 Hydrangea macrophylla HOM05D004146 ORTHO05D004843 4.9e-151 538.5 455 66.8
Aqoxy4G02480 Aquilegia oxysepala HOM05D004146 ORTHO05D004843 2.4e-150 536.2 454 66.3
unitig_736.g22928 Utricularia gibba HOM05D004146 ORTHO05D004843 4.1e-150 535.4 457 65.9
Hund09662 Selenicereus undatus HOM05D004146 ORTHO05D004843 1.6e-149 533.5 414 70.3
AUR62011755 Chenopodium quinoa HOM05D004146 ORTHO05D004843 6.0e-149 531.6 425 67.3
Medtr1g086590 Medicago truncatula HOM05D004146 ORTHO05D004843 5.6e-147 525.0 426 68.3
A05p00620 Brassica napus HOM05D004146 ORTHO05D004843 5.8e-144 515.0 368 72.6
Nitab4.5_0010752g0020 Nicotiana tabacum HOM05D004146 ORTHO05D004843 5.1e-140 501.9 371 70.9
Ca_10265_v3 Cicer arietinum L. HOM05D004146 ORTHO05D004843 1.6e-133 480.3 506 56.1
Haze_05083 Corylus avellana HOM05D004146 ORTHO05D004843 3.5e-133 479.2 480 59.0
Duzib138G1200 Durio zibethinus HOM05D004146 ORTHO05D004843 4.3e-131 472.2 451 60.3
Oeu044739.1 Olea europaea HOM05D004146 ORTHO05D004843 5.6e-131 471.9 399 65.7
TPR.G31750 Trifolium pratense HOM05D004146 ORTHO05D004843 8.1e-130 468.0 423 63.4
DCAR_018267 Daucus carota HOM05D004146 ORTHO05D004843 1.8e-129 466.8 415 61.9
SEGI_29063 Sequoiadendron giganteum HOM05D004146 ORTHO05D004843 1.8e-129 466.8 464 56.2
CiPaw.07G120600 Carya illinoinensis HOM05D004146 ORTHO05D004843 5.6e-123 445.3 343 69.4
Lj1A14G70 Lonicera japonica HOM05D004146 ORTHO05D004843 4.9e-119 432.2 342 67.8
Mapoly0165s0024 Marchantia polymorpha HOM05D004146 ORTHO05D004843 8.7e-116 421.4 476 51.5
AagrBONN_evm.TU.Sc2ySwM_228.1245 Anthoceros agrestis HOM05D004146 ORTHO05D004843 1.1e-113 414.5 511 49.9
SMO244G0096 Selaginella moellendorffii HOM05D004146 ORTHO05D004843 2.1e-109 400.2 447 52.8
Pp3c1_35180 Physcomitrium patens HOM05D004146 ORTHO05D004843 1.1e-105 387.9 495 46.7
BcaC02g09008 Brassica carinata HOM05D004146 ORTHO05D004843 1.4e-97 360.9 465 49.9
Psat6g160560 Pisum sativum HOM05D004146 ORTHO05D004843 1.8e-97 360.5 399 53.9
SHI33153 Sapria himalayana HOM05D004146 ORTHO05D004843 2.6e-96 356.7 241 73.9
BolC4t25516H Brassica oleracea HOM05D004146 ORTHO05D004843 3.3e-91 339.7 342 57.6
Dinv33143 Davidia involucrata HOM05D004146 ORTHO05D004843 7.4e-91 338.6 486 46.3
CBR_g3593 Chara braunii HOM05D004146 ORTHO05D004843 2.3e-84 317.0 559 39.9
Psat6g160640 Pisum sativum HOM05D004146 ORTHO05D004843 2.2e-79 300.4 373 50.9
Pp3c2_4040 Physcomitrium patens HOM05D004146 ORTHO05D004843 2.3e-76 290.4 391 44.8
Mapoly0092s0082 Marchantia polymorpha HOM05D004146 ORTHO05D004843 1.9e-70 270.8 517 36.9
BolC4t25515H Brassica oleracea HOM05D004146 ORTHO05D004843 5.7e-59 232.6 173 69.4
BolC4t28751H Brassica oleracea HOM05D004146 ORTHO05D004843 3.7e-58 229.9 253 58.1
C04p39500 Brassica napus HOM05D004146 ORTHO05D004843 7.8e-56 222.2 177 64.4
Lj1g0004326 Lotus japonicus HOM05D004146 ORTHO05D004843 8.6e-55 218.8 258 51.6
PRCOL_00004506 Prasinoderma coloniale HOM05D004146 ORTHO05D004843 8.6e-55 218.8 388 37.9
C04p39490 Brassica napus HOM05D004146 ORTHO05D004843 2.5e-54 217.2 178 64.0
SalBow3G0988 Salvia bowleyana HOM05D004146 ORTHO05D004843 1.2e-53 214.9 128 80.5
BcaC02g09009 Brassica carinata HOM05D004146 ORTHO05D004843 2.2e-50 204.1 171 62.0
AagrBONN_evm.TU.Sc2ySwM_228.1331 Anthoceros agrestis HOM05D004146 ORTHO05D004843 1.3e-47 194.9 391 37.1
Actinidia20972 Actinidia chinensis HOM05D004146 ORTHO05D004843 2.6e-43 180.6 247 46.6
Cre03.g144907 Chlamydomonas reinhardtii HOM05D004146 ORTHO05D004843 2.6e-43 180.6 268 41.0
Psat6g160680 Pisum sativum HOM05D004146 ORTHO05D004843 5.8e-35 152.9 107 67.3
Lj1A14G71 Lonicera japonica HOM05D004146 ORTHO05D004843 6.0e-32 142.9 134 64.2
MCO05G453 Micromonas commoda HOM05D004146 ORTHO05D004843 1.3e-31 141.7 362 34.8
Oeu062253.1 Olea europaea HOM05D004146 ORTHO05D004843 1.3e-31 141.7 136 55.9
TPR.G18531 Trifolium pratense HOM05D004146 ORTHO05D004843 1.8e-28 131.3 90 68.9
Lsat_1_v5_gn_8_147141 Lactuca sativa HOM05D004146 ORTHO05D004843 9.9e-27 125.6 140 56.4
Lsat_1_v5_gn_3_136441 Lactuca sativa HOM05D004146 ORTHO05D004843 1.3e-26 125.2 200 47.0
Lsat_1_v5_gn_2_7680 Lactuca sativa HOM05D004146 ORTHO05D004843 2.9e-26 124.0 130 60.8
Sabra02G0047100 Salix brachista HOM05D004503 ORTHO05D005460 7.1e-25 119.4 165 50.3
BcaC02g12616 Brassica carinata HOM05D004146 ORTHO05D004843 6.0e-24 116.3 171 43.9
GSVIVG01028163001 Vitis vinifera HOM05D004146 ORTHO05D004843 6.9e-20 102.8 82 68.3
Cfa022451 Carpinus fangiana HOM05D004146 ORTHO05D004843 3.8e-18 97.1 316 27.2
RcHm_v2.0_Chr2g0114941 Rosa chinensis HOM05D004146 ORTHO05D004843 6.4e-18 96.3 99 51.5
CAN.G111.15 Capsicum annuum HOM05D004146 ORTHO05D004843 7.1e-17 92.8 56 71.4
HPP92_024388 Vanilla planifolia HOM05D002498 ORTHO05D008129 1.7e-15 88.2 54 79.6
C04p39510 Brassica napus HOM05D004146 ORTHO05D004843 1.8e-12 78.2 128 46.9
BolC4t28750H Brassica oleracea HOM05D004146 ORTHO05D004843 1.8e-12 78.2 199 36.2
RcHm_v2.0_Chr6g0284911 Rosa chinensis HOM05D004215 ORTHO05D005293 3.8e-10 70.5 109 37.6
Lsat_1_v5_gn_4_71221 Lactuca sativa HOM05D002292 ORTHO05D003256 9.3e-09 65.9 42 83.3
VMungo1383G1227 Vigna mungo HOM05D004146 ORTHO05D000001 3.5e-08 63.9 43 74.4
CSS0026841 Camellia sinensis var. sinensis HOM05D004146 ORTHO05D004843 2.3e-07 61.2 32 93.8
Oeu042819.1 Olea europaea HOM05D004146 ORTHO05D004843 3.0e-07 60.8 40 77.5
DCAR_017471 Daucus carota HOM05D004146 ORTHO05D004843 1.1e-06 58.9 42 66.7


User provided reference genes

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