Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.K03484 Eucalyptus grandis HOM05D000113 ORTHO05D008110 0.0e+00 1306.2 641 100.0
Eucgr.K03481 Eucalyptus grandis HOM05D000113 ORTHO05D008110 3.4e-307 1057.7 766 70.8
Eucgr.K03485 Eucalyptus grandis HOM05D000113 ORTHO05D008110 7.6e-307 1056.6 763 71.4
Eucgr.K03483 Eucalyptus grandis HOM05D000113 ORTHO05D008110 6.1e-304 1047.0 766 70.5
Eucgr.K03477 Eucalyptus grandis HOM05D000113 ORTHO05D008110 1.7e-258 896.0 764 63.0
CiPaw.07G108300 Carya illinoinensis HOM05D000113 ORTHO05D008110 1.7e-189 666.8 765 47.2
Cfa005918 Carpinus fangiana HOM05D000113 ORTHO05D008110 6.7e-186 654.8 769 46.8
Atru.chr5.1152 Acer truncatum HOM05D000113 ORTHO05D008110 1.5e-185 653.7 765 46.5
Ciclev10018660m.g Citrus clementina HOM05D000113 ORTHO05D008110 3.1e-183 646.0 768 45.2
Prupe.8G260900 Prunus persica HOM05D000113 ORTHO05D008110 6.9e-183 644.8 764 46.5
PGR044G1807 Punica granatum HOM05D000113 ORTHO05D008110 2.0e-182 643.3 767 46.2
TAR636G2876 Trochodendron aralioides HOM05D000113 ORTHO05D008110 5.0e-181 638.6 770 45.2
Thecc.01G299800 Theobroma cacao HOM05D000113 ORTHO05D008110 1.1e-180 637.5 767 45.4
Haze_04932 Corylus avellana HOM05D000113 ORTHO05D008110 2.5e-180 636.3 784 45.0
Gohir.D12G134400 Gossypium hirsutum HOM05D000113 ORTHO05D008110 8.2e-176 621.3 765 44.8
Dinv19697 Davidia involucrata HOM05D000113 ORTHO05D008110 1.1e-175 620.9 771 44.6
Duzib138G1325 Durio zibethinus HOM05D000113 ORTHO05D008110 1.8e-175 620.2 765 44.4
Gorai.008G145400 Gossypium raimondii HOM05D000113 ORTHO05D008110 1.8e-175 620.2 765 44.8
Gohir.A12G130600 Gossypium hirsutum HOM05D000113 ORTHO05D008110 3.1e-175 619.4 765 44.7
COL.COLO4_23351 Corchorus olitorius HOM05D000113 ORTHO05D008110 2.6e-174 616.3 765 44.6
Potri.017G031800 Populus trichocarpa HOM05D000113 ORTHO05D008110 3.4e-174 615.9 766 44.0
TAR365G0742 Trochodendron aralioides HOM05D000113 ORTHO05D008110 5.9e-174 615.1 771 44.5
QL12p028521 Quercus lobata HOM05D000113 ORTHO05D008110 2.2e-173 613.2 774 45.0
TWI23G0215 Tripterygium wilfordii HOM05D000113 ORTHO05D008110 2.2e-173 613.2 766 43.3
Lj2A1194T51 Lonicera japonica HOM05D000113 ORTHO05D008110 1.4e-172 610.5 767 44.5
Sc24g0003800 Simmondsia chinensis HOM05D000113 ORTHO05D008110 4.2e-172 609.0 767 42.8
FvH4_2g25691 Fragaria vesca HOM05D000113 ORTHO05D008110 4.7e-171 605.5 772 44.7
FAN24G2368 Fragaria x ananassa HOM05D000113 ORTHO05D008110 4.7e-171 605.5 772 44.7
RcHm_v2.0_Chr6g0293951 Rosa chinensis HOM05D000113 ORTHO05D008110 3.0e-170 602.8 772 44.3
Manes.01G218500 Manihot esculenta HOM05D000113 ORTHO05D008110 2.6e-169 599.7 768 43.9
Lj5g0009328 Lotus japonicus HOM05D000113 ORTHO05D008110 5.7e-169 598.6 768 44.5
Nn3g21480 Nelumbo nucifera HOM05D000113 ORTHO05D008110 2.8e-168 596.3 769 43.0
FAN15G1622 Fragaria x ananassa HOM05D000113 ORTHO05D008110 7.0e-167 591.7 772 43.4
CSS0020045 Camellia sinensis var. sinensis HOM05D000113 ORTHO05D008110 3.5e-166 589.3 776 43.2
PSO170G4966 Papaver somniferum HOM05D000113 ORTHO05D008110 4.5e-166 589.0 768 42.1
Sabra17G0020300 Salix brachista HOM05D000113 ORTHO05D008110 4.5e-166 589.0 791 42.2
GSVIVG01027995001 Vitis vinifera HOM05D000113 ORTHO05D008110 7.7e-166 588.2 774 42.9
PSO407G0393 Papaver somniferum HOM05D000113 ORTHO05D008110 8.5e-165 584.7 768 41.8
Rhsim01G0284800 Rhododendron simsii HOM05D000113 ORTHO05D008110 8.5e-165 584.7 870 40.5
Actinidia24825 Actinidia chinensis HOM05D000113 ORTHO05D008110 1.9e-164 583.6 763 43.5
Psat6g166080 Pisum sativum HOM05D000113 ORTHO05D008110 1.9e-164 583.6 767 42.1
Cc01_g20800 Coffea canephora HOM05D000113 ORTHO05D008110 2.5e-164 583.2 768 42.7
FAN20G1487 Fragaria x ananassa HOM05D000113 ORTHO05D008110 2.5e-164 583.2 772 43.3
TPR.G33994 Trifolium pratense HOM05D000113 ORTHO05D008110 4.2e-164 582.4 770 42.7
Medtr1g088590 Medicago truncatula HOM05D000113 ORTHO05D008110 1.4e-162 577.4 767 42.0
CAN.G1989.5 Capsicum annuum HOM05D000113 ORTHO05D008110 8.8e-162 574.7 760 42.9
MSTRG.18154 Avicennia marina HOM05D000113 ORTHO05D008110 2.6e-161 573.2 768 41.4
EL10Ac7g17516 Beta vulgaris HOM05D000113 ORTHO05D008110 4.4e-161 572.4 770 40.0
Aqoxy5G00751 Aquilegia oxysepala HOM05D000113 ORTHO05D008110 7.5e-161 571.6 764 41.9
Lalb_Chr06g0163501 Lupinus albus HOM05D000113 ORTHO05D008110 6.3e-160 568.5 770 41.3
Ca_10340_v3 Cicer arietinum L. HOM05D000113 ORTHO05D008110 8.2e-160 568.2 767 41.9
SGA_v2.0_scaffold2G01396 Striga asiatica HOM05D000113 ORTHO05D008110 3.5e-158 562.8 766 41.6
Nitab4.5_0005805g0010 Nicotiana tabacum HOM05D000113 ORTHO05D008110 2.2e-157 560.1 766 42.7
SalBow3G0505 Salvia bowleyana HOM05D000113 ORTHO05D008110 2.9e-157 559.7 764 41.0
MD03G1287700 Malus domestica HOM05D000113 ORTHO05D008110 1.5e-156 557.4 757 42.8
BcaNung06419 Brassica carinata HOM05D000113 ORTHO05D008110 2.1e-155 553.5 769 39.7
Ah.08g213060 Amaranthus hybridus HOM05D000113 ORTHO05D008110 6.1e-155 552.0 764 39.3
PSO170G4996 Papaver somniferum HOM05D000113 ORTHO05D008110 3.0e-154 549.7 579 47.3
CARHR143070 Cardamine hirsuta HOM05D000113 ORTHO05D008110 4.0e-154 549.3 767 40.2
Peaxi162Scf00399g00810 Petunia axillaris HOM05D000113 ORTHO05D008110 8.8e-154 548.1 766 41.5
HanXRQChr04g0114511 Helianthus annuus HOM05D000113 ORTHO05D008110 2.2e-152 543.5 767 41.1
Migut.D00214 Erythranthe guttata HOM05D000113 ORTHO05D008110 1.4e-151 540.8 772 40.3
AT2G47680 Arabidopsis thaliana HOM05D000113 ORTHO05D008110 2.4e-151 540.0 767 39.6
HanXRQChr06g0163801 Helianthus annuus HOM05D000113 ORTHO05D008110 3.1e-151 539.7 766 40.5
Sp4g29610 Schrenkiella parvula HOM05D000113 ORTHO05D008110 2.0e-150 537.0 761 40.2
Nitab4.5_0002470g0060 Nicotiana tabacum HOM05D000113 ORTHO05D008110 3.5e-150 536.2 777 41.3
THA.LOC104817498 Tarenaya hassleriana HOM05D000113 ORTHO05D008110 4.5e-150 535.8 769 41.6
arahy.Tifrunner.gnm1.ann1.BY1460 Arachis hypogaea HOM05D000113 ORTHO05D008110 7.7e-150 535.0 767 39.9
Migut.B01151 Erythranthe guttata HOM05D000113 ORTHO05D008110 1.0e-149 534.6 772 39.6
AUR62033138 Chenopodium quinoa HOM05D000113 ORTHO05D008110 1.3e-149 534.3 800 38.6
Sed0019854 Sechium edule HOM05D000113 ORTHO05D008110 2.9e-149 533.1 766 41.0
Sopen06g003870 Solanum pennellii HOM05D000113 ORTHO05D008110 1.1e-148 531.2 766 40.6
arahy.Tifrunner.gnm1.ann1.94GFRR Arachis hypogaea HOM05D000113 ORTHO05D008110 1.9e-148 530.4 767 39.6
Solyc06g009070.3 Solanum lycopersicum HOM05D000113 ORTHO05D008110 4.2e-148 529.3 766 40.5
CsaV3_4G000770 Cucumis sativus L. HOM05D000113 ORTHO05D008110 1.2e-147 527.7 807 39.0
BolC4t21666H Brassica oleracea HOM05D000113 ORTHO05D008110 3.6e-147 526.2 769 38.4
AL4G47250 Arabidopsis lyrata HOM05D000113 ORTHO05D008110 4.7e-147 525.8 767 39.2
BcaC02g12550 Brassica carinata HOM05D000113 ORTHO05D008110 1.0e-146 524.6 769 38.2
C04p00190 Brassica napus HOM05D000113 ORTHO05D008110 1.0e-146 524.6 769 38.2
ECA236G2215 Erigeron canadensis HOM05D000113 ORTHO05D008110 1.8e-146 523.9 766 39.6
A05p00280 Brassica napus HOM05D000113 ORTHO05D008110 6.8e-146 521.9 769 38.0
BraA05t19025Z Brassica rapa HOM05D000113 ORTHO05D008110 6.8e-146 521.9 769 38.0
Carub.0004s3040 Capsella rubella HOM05D000113 ORTHO05D008110 1.2e-145 521.2 768 38.8
DCAR_002827 Daucus carota HOM05D000113 ORTHO05D008110 2.0e-145 520.4 756 40.6
Lsat_1_v5_gn_8_163500 Lactuca sativa HOM05D000113 ORTHO05D008110 2.8e-144 516.5 774 39.4
Thhalv10001290m.g Eutrema salsugineum HOM05D000113 ORTHO05D008110 3.7e-144 516.2 757 39.4
Oeu046683.2 Olea europaea HOM05D000113 ORTHO05D008110 3.2e-135 486.5 765 38.2
ClCG10G010890 Citrullus lanatus HOM05D000113 ORTHO05D008110 2.4e-127 460.3 847 34.8
AUR62008633 Chenopodium quinoa HOM05D000113 ORTHO05D008110 1.7e-125 454.1 768 36.3
MELO3C017959.2 Cucumis melo HOM05D000113 ORTHO05D008110 1.5e-124 451.1 765 37.0
HPP92_000109 Vanilla planifolia HOM05D000113 ORTHO05D008110 5.2e-122 442.6 740 34.9
ATR0796G147 Amborella trichopoda HOM05D000113 ORTHO05D008110 3.7e-120 436.4 765 35.4
BcaB02g08754 Brassica carinata HOM05D000113 ORTHO05D008110 2.4e-119 433.7 584 40.4
unitig_22.g5242 Utricularia gibba HOM05D000113 ORTHO05D008110 9.2e-111 405.2 766 33.0
CSS0030253 Camellia sinensis var. sinensis HOM05D000113 ORTHO05D008110 3.0e-109 400.2 533 42.8
Os01g0256800 Oryza sativa ssp. japonica HOM05D000113 ORTHO05D008110 4.7e-107 392.9 773 33.8
Zm00001eb333510 Zea mays HOM05D000113 ORTHO05D008110 3.8e-96 356.7 769 31.5
Cpa.g.sc9.265 Carica papaya HOM05D000113 ORTHO05D008110 7.1e-95 352.4 659 34.7
vmacro15006 Vaccinium macrocarpon HOM05D000113 ORTHO05D008110 7.6e-89 332.4 576 37.0
Hund18149 Selenicereus undatus HOM05D000113 ORTHO05D008110 2.1e-83 314.3 483 38.5
Rhsim01G0284900 Rhododendron simsii HOM05D000113 ORTHO05D008110 3.9e-77 293.5 353 46.7
Sabra02G0154700 Salix brachista HOM05D002674 ORTHO05D008110 7.9e-70 269.2 539 35.6
Hund18150 Selenicereus undatus HOM05D000113 ORTHO05D008110 1.0e-64 252.3 253 47.4
Mapoly0080s0073 Marchantia polymorpha HOM05D000113 ORTHO05D008110 5.5e-55 219.9 803 23.7
SMO147G0281 Selaginella moellendorffii HOM05D000113 ORTHO05D008110 9.4e-47 192.6 586 29.4
SMO147G0285 Selaginella moellendorffii HOM05D000113 ORTHO05D008110 7.0e-34 149.8 346 32.1
Actinidia21050 Actinidia chinensis HOM05D000113 ORTHO05D008110 6.6e-32 143.3 235 37.4
SMO273G0010 Selaginella moellendorffii HOM05D000113 ORTHO05D008110 1.6e-30 138.7 460 28.0
CDE05G0518 Ceratophyllum demersum HOM05D000113 ORTHO05D008110 3.2e-26 124.4 159 39.6
Hma1.2p1_0589F.1_g184770 Hydrangea macrophylla HOM05D001816 ORTHO05D008110 1.9e-23 115.2 124 51.6
BcaNung07106 Brassica carinata HOM05D000113 ORTHO05D027285 9.8e-20 102.8 97 48.5
SMO147G0086 Selaginella moellendorffii HOM05D000113 ORTHO05D008110 9.5e-15 86.3 429 25.4
CANSAT25G0202 Cannabis sativa HOM05D000113 ORTHO05D008110 3.3e-07 61.2 41 65.9
C04p39570 Brassica napus HOM05D000113 ORTHO05D027285 5.6e-07 60.5 98 33.7


User provided reference genes

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