Gene: Sopen06g003870

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen06g003870
  • Transcript Identifier Sopen06g003870.1
  • Gene Type Coding gene
  • Location Spenn-ch06 : 3323909-3340371 : positive

Gene Family Information

  • ID HOM05D000113
  • #Genes/#Species 2932/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen06g003870.1

Descriptions

  • Description zinc finger (CCCH type) helicase family protein | FUNCTIONS IN: helicase activity, zinc ion binding, nucleic acid binding, ATP binding, ATP-dependent helicase activity | INVOLVED IN: nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | LOCATED IN: chloroplast | EXPRESSED IN: 19 plant structures | EXPRESSED DURING: 13 growth stages | CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type , DNA/RNA helicase, DEAD/DEAH box type, N-terminal , DEAD-like helicase, N-terminal , DNA/RNA helicase, C-terminal , Helicase, superfamily 1/2, ATP-binding domain | BEST Arabidopsis thaliana protein match is: DEA(D/H)-box RNA helicase family protein
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Functional Annotation

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0046872
IEA
InterPrometal ion binding
GO:0003676
IEA
InterPronucleic acid binding
GO:0005524
IEA
InterProATP binding
GO:0003729
ISO
PLAZA Integrative OrthologymRNA binding AT2G47680
GO:0004386
ISO
PLAZA Homology (enrichment)helicase activity HOM05D000113

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR027417 P-loop containing nucleoside triphosphate hydrolase
IPR036855 Zinc finger, CCCH-type superfamily
IPR014001 Helicase superfamily 1/2, ATP-binding domain
IPR001650 Helicase, C-terminal
IPR000571 Zinc finger, CCCH-type
IPR011545 DEAD/DEAH box helicase domain
Mapman id Description
35.1 not assigned.annotated