Gene: AT2G47680

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT2G47680
  • Transcript Identifier AT2G47680.1
  • Gene Type Coding gene
  • Location Chr2 : 19545828-19550871 : negative

Gene Family Information

  • ID HOM05D000113
  • #Genes/#Species 2932/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT2G47680.1
  • uniprot O22243

Descriptions

  • Description zinc finger (CCCH type) helicase family protein
  • Computational description zinc finger (CCCH type) helicase family protein; FUNCTIONS IN: helicase activity, zinc ion binding, nucleic acid binding, ATP binding, ATP-dependent helicase activity; INVOLVED IN: nucleobase, nucleoside, nucleotide and nucleic acid metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: DEA(D/H)-box RNA helicase family protein (TAIR:AT2G01130.1); Has 9601 Blast hits to 8936 proteins in 1526 species: Archae - 0; Bacteria - 3317; Metazoa - 2456; Fungi - 1337; Plants - 806; Viruses - 205; Other Eukaryotes - 1480 (source: NCBI BLink).
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0032508
IEA
GOA DatabaseDNA duplex unwinding

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003723
IEA
GOA DatabaseRNA binding
GO:0003723
IBA
Gene OntologyRNA binding1
GO:0005524
IEA
GOA DatabaseATP binding
GO:0005524
IEA
InterProATP binding
GO:0003676
IEA
GOA Databasenucleic acid binding
GO:0003676
IEA
InterPronucleic acid binding
GO:0046872
IEA
GOA Databasemetal ion binding
GO:0046872
IEA
InterPrometal ion binding
GO:0004386
IEA
GOA Databasehelicase activity
GO:0016787
IEA
GOA Databasehydrolase activity
GO:0000166
IEA
GOA Databasenucleotide binding
GO:0003677
IEA
GOA DatabaseDNA binding
GO:0003678
IEA
Gene OntologyDNA helicase activity
GO:0003729
IDA, HDA
Gene OntologymRNA binding2 3
GO:0003724
IEA
Gene OntologyRNA helicase activity

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005622
IBA
Gene Ontologyintracellular anatomical structure1
GO:0005634
ISM
Gene Ontologynucleus

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR027417 P-loop containing nucleoside triphosphate hydrolase
IPR014001 Helicase superfamily 1/2, ATP-binding domain
IPR001650 Helicase, C-terminal
IPR036855 Zinc finger, CCCH-type superfamily
IPR011545 DEAD/DEAH box helicase domain
IPR000571 Zinc finger, CCCH-type
Mapman id Description
35.1 not assigned.annotated