Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.K02038 Eucalyptus grandis HOM05D001849 ORTHO05D004689 0.0e+00 1780.0 884 100.0
GSVIVG01016717001 Vitis vinifera HOM05D001849 ORTHO05D004689 0.0e+00 1401.0 874 77.6
Manes.11G016400 Manihot esculenta HOM05D001849 ORTHO05D004689 0.0e+00 1395.6 866 79.1
QL05p003662 Quercus lobata HOM05D001849 ORTHO05D004689 0.0e+00 1395.6 860 79.2
Cfa003503 Carpinus fangiana HOM05D001849 ORTHO05D004689 0.0e+00 1392.9 870 78.4
CSS0036951 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 0.0e+00 1385.9 856 79.4
PGR119G1999 Punica granatum HOM05D001849 ORTHO05D004689 0.0e+00 1385.5 877 77.7
CiPaw.01G216000 Carya illinoinensis HOM05D001849 ORTHO05D004689 0.0e+00 1385.2 870 77.7
Thecc.06G124800 Theobroma cacao HOM05D001849 ORTHO05D004689 0.0e+00 1375.5 869 77.9
Atru.chr2.1505 Acer truncatum HOM05D001849 ORTHO05D004689 0.0e+00 1370.9 874 76.2
Duzib192G0006 Durio zibethinus HOM05D001849 ORTHO05D004689 0.0e+00 1366.3 869 77.4
Gohir.A09G079900 Gossypium hirsutum HOM05D001849 ORTHO05D004689 0.0e+00 1359.4 869 76.4
Duzib235G0671 Durio zibethinus HOM05D001849 ORTHO05D004689 0.0e+00 1358.6 866 77.3
Gohir.D09G079550 Gossypium hirsutum HOM05D001849 ORTHO05D004689 0.0e+00 1358.2 869 76.6
Gorai.006G094800 Gossypium raimondii HOM05D001849 ORTHO05D004689 0.0e+00 1356.7 869 76.6
Sabra01G0127400 Salix brachista HOM05D001849 ORTHO05D004689 0.0e+00 1352.4 861 77.1
Prupe.3G037400 Prunus persica HOM05D001849 ORTHO05D004689 0.0e+00 1350.1 871 76.7
Ciclev10027090m.g Citrus clementina HOM05D001849 ORTHO05D004689 0.0e+00 1349.7 859 76.4
TWI59G1440 Tripterygium wilfordii HOM05D001849 ORTHO05D004689 0.0e+00 1349.7 866 75.5
vmacro15054 Vaccinium macrocarpon HOM05D001849 ORTHO05D004689 0.0e+00 1345.5 871 75.3
Potri.001G165900 Populus trichocarpa HOM05D001849 ORTHO05D004689 0.0e+00 1344.3 869 76.2
CSS0020628 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 0.0e+00 1341.6 871 76.1
Sopen12g023890 Solanum pennellii HOM05D001849 ORTHO05D004689 0.0e+00 1334.7 875 73.9
Cc04_g01040 Coffea canephora HOM05D001849 ORTHO05D004689 0.0e+00 1331.6 868 74.3
Solyc12g049410.3 Solanum lycopersicum HOM05D001849 ORTHO05D004689 0.0e+00 1331.2 875 73.8
MD09G1178100 Malus domestica HOM05D001849 ORTHO05D004689 0.0e+00 1326.2 871 75.2
COL.COLO4_30797 Corchorus olitorius HOM05D001849 ORTHO05D004689 0.0e+00 1320.8 869 74.8
CAN.G1243.9 Capsicum annuum HOM05D001849 ORTHO05D004689 0.0e+00 1318.9 856 74.8
Dinv20408 Davidia involucrata HOM05D001849 ORTHO05D004689 0.0e+00 1310.8 818 78.6
THA.LOC104822664 Tarenaya hassleriana HOM05D001849 ORTHO05D004689 0.0e+00 1309.3 869 74.3
MD17G1148600 Malus domestica HOM05D001849 ORTHO05D004689 0.0e+00 1307.4 879 74.5
TPR.G29992 Trifolium pratense HOM05D001849 ORTHO05D004689 0.0e+00 1307.0 869 73.5
TAR626G0833 Trochodendron aralioides HOM05D001849 ORTHO05D004689 0.0e+00 1306.6 845 75.4
MBI13_g01700_MAGBIO Magnolia biondii HOM05D001849 ORTHO05D004689 0.0e+00 1303.9 859 74.6
EL10Ac7g16444 Beta vulgaris HOM05D001849 ORTHO05D004689 0.0e+00 1303.1 902 71.6
Lj3g0004011 Lotus japonicus HOM05D001849 ORTHO05D004689 0.0e+00 1303.1 866 73.6
VMungo0331G1611 Vigna mungo HOM05D001849 ORTHO05D004689 0.0e+00 1295.0 866 73.1
Thhalv10019957m.g Eutrema salsugineum HOM05D001849 ORTHO05D004689 0.0e+00 1294.3 871 73.4
CANSAT56G0878 Cannabis sativa HOM05D001849 ORTHO05D004689 0.0e+00 1293.9 874 73.9
Psat4g166880 Pisum sativum HOM05D001849 ORTHO05D004689 0.0e+00 1293.5 869 72.7
Lj9C535G6 Lonicera japonica HOM05D001849 ORTHO05D004689 0.0e+00 1288.1 851 75.0
DCAR_026423 Daucus carota HOM05D001849 ORTHO05D004689 0.0e+00 1285.4 884 71.3
FvH4_6g35170 Fragaria vesca HOM05D001849 ORTHO05D004689 0.0e+00 1283.1 871 73.5
RcHm_v2.0_Chr2g0146431 Rosa chinensis HOM05D001849 ORTHO05D004689 0.0e+00 1281.5 873 73.4
Sed0016273 Sechium edule HOM05D001849 ORTHO05D004689 0.0e+00 1281.2 867 72.4
Phvul.010G127100 Phaseolus vulgaris HOM05D001849 ORTHO05D004689 0.0e+00 1279.6 854 73.3
Carub.0003s1373 Capsella rubella HOM05D001849 ORTHO05D004689 0.0e+00 1277.3 869 71.9
FAN05G2930 Fragaria x ananassa HOM05D001849 ORTHO05D004689 0.0e+00 1277.3 871 73.1
AT3G14120 Arabidopsis thaliana HOM05D001849 ORTHO05D004689 0.0e+00 1276.5 871 71.9
AL3G26350 Arabidopsis lyrata HOM05D001849 ORTHO05D004689 0.0e+00 1275.8 871 72.1
Glyma.07G042000 Glycine max HOM05D001849 ORTHO05D004689 0.0e+00 1275.0 876 71.9
Hund18672 Selenicereus undatus HOM05D001849 ORTHO05D004689 0.0e+00 1273.8 880 71.8
CsaV3_7G034250 Cucumis sativus L. HOM05D001849 ORTHO05D004689 0.0e+00 1273.1 857 72.6
ClCG09G001140 Citrullus lanatus HOM05D001849 ORTHO05D004689 0.0e+00 1271.1 883 71.0
C05p53520 Brassica napus HOM05D001849 ORTHO05D004689 0.0e+00 1270.4 869 72.2
Medtr8g022010 Medicago truncatula HOM05D001849 ORTHO05D004689 0.0e+00 1270.0 872 71.8
Sp3g12380 Schrenkiella parvula HOM05D001849 ORTHO05D004689 0.0e+00 1268.4 869 72.2
C01p50480 Brassica napus HOM05D001849 ORTHO05D004689 0.0e+00 1267.7 878 71.6
Aa31LG8G1350 Aethionema arabicum HOM05D001849 ORTHO05D004689 0.0e+00 1267.3 871 71.9
A05p35330 Brassica napus HOM05D001849 ORTHO05D004689 0.0e+00 1265.0 869 72.0
Peaxi162Scf00177g00518 Petunia axillaris HOM05D001849 ORTHO05D004689 0.0e+00 1265.0 850 72.4
BolC1t05000H Brassica oleracea HOM05D001849 ORTHO05D004689 0.0e+00 1264.2 882 71.2
Lalb_Chr10g0101321 Lupinus albus HOM05D001849 ORTHO05D004689 0.0e+00 1263.8 866 72.3
SGA_v2.0_scaffold4G02078 Striga asiatica HOM05D001849 ORTHO05D004689 0.0e+00 1262.3 868 70.9
BolC5t34029H Brassica oleracea HOM05D001849 ORTHO05D004689 0.0e+00 1261.5 869 71.7
FAN02G0489 Fragaria x ananassa HOM05D001849 ORTHO05D004689 0.0e+00 1260.0 928 69.2
BcaC05g29121 Brassica carinata HOM05D001849 ORTHO05D004689 0.0e+00 1256.5 869 71.7
PSO724G1390 Papaver somniferum HOM05D001849 ORTHO05D004689 0.0e+00 1256.5 872 71.2
PSO386G0179 Papaver somniferum HOM05D001849 ORTHO05D004689 0.0e+00 1254.6 872 71.1
FAN14G1459 Fragaria x ananassa HOM05D001849 ORTHO05D004689 0.0e+00 1251.1 876 71.8
Nitab4.5_0000189g0010 Nicotiana tabacum HOM05D001849 ORTHO05D004689 0.0e+00 1246.9 821 73.4
AUR62001443 Chenopodium quinoa HOM05D001849 ORTHO05D004689 0.0e+00 1246.1 879 70.5
AUR62009922 Chenopodium quinoa HOM05D001849 ORTHO05D004689 0.0e+00 1242.6 920 68.2
Haze_16076 Corylus avellana HOM05D001849 ORTHO05D004689 0.0e+00 1241.5 933 68.7
Aqoxy7G04006 Aquilegia oxysepala HOM05D001849 ORTHO05D004689 0.0e+00 1240.3 860 71.2
BraA05t22343Z Brassica rapa HOM05D001849 ORTHO05D004689 0.0e+00 1239.6 907 68.8
arahy.Tifrunner.gnm1.ann1.1RN2YG Arachis hypogaea HOM05D001849 ORTHO05D004689 0.0e+00 1232.2 827 72.6
Lsat_1_v5_gn_4_91381 Lactuca sativa HOM05D001849 ORTHO05D004689 0.0e+00 1231.1 875 69.8
ECA232G2821 Erigeron canadensis HOM05D001849 ORTHO05D004689 0.0e+00 1230.3 873 70.9
arahy.Tifrunner.gnm1.ann1.RMM65D Arachis hypogaea HOM05D001849 ORTHO05D004689 0.0e+00 1227.6 827 72.3
Rhsim08G0241300 Rhododendron simsii HOM05D001849 ORTHO05D004689 0.0e+00 1226.8 865 71.4
SalBow7G1889 Salvia bowleyana HOM05D001849 ORTHO05D004689 0.0e+00 1206.8 993 62.7
HanXRQChr09g0277131 Helianthus annuus HOM05D001849 ORTHO05D004689 0.0e+00 1194.5 876 68.0
FAN09G4066 Fragaria x ananassa HOM05D001849 ORTHO05D004689 0.0e+00 1194.1 871 69.9
MELO3C024334.2 Cucumis melo HOM05D001849 ORTHO05D004689 0.0e+00 1176.4 949 63.6
ATR0681G401 Amborella trichopoda HOM05D001849 ORTHO05D004689 0.0e+00 1157.1 872 64.6
Actinidia32206 Actinidia chinensis HOM05D001849 ORTHO05D004689 0.0e+00 1152.1 871 66.4
HPP92_022009 Vanilla planifolia HOM05D001849 ORTHO05D004689 0.0e+00 1134.0 868 64.4
CDE07G1134 Ceratophyllum demersum HOM05D001849 ORTHO05D004689 0.0e+00 1127.9 868 65.9
CDE06G0404 Ceratophyllum demersum HOM05D001849 ORTHO05D004689 0.0e+00 1105.1 848 66.3
Zm00001eb165950 Zea mays HOM05D001849 ORTHO05D004689 0.0e+00 1099.0 876 63.4
Hma1.2p1_0229F.1_g096770 Hydrangea macrophylla HOM05D001849 ORTHO05D004689 0.0e+00 1092.0 700 76.9
CSS0003623 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 0.0e+00 1082.8 788 70.6
CSS0050059 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 6.0e-312 1074.7 779 70.5
Oeu008524.4 Olea europaea HOM05D001849 ORTHO05D004689 1.4e-306 1056.2 966 57.7
Migut.D00924 Erythranthe guttata HOM05D001849 ORTHO05D004689 3.1e-306 1055.0 718 71.2
unitig_578.g16691 Utricularia gibba HOM05D001849 ORTHO05D004689 1.9e-292 1009.2 845 59.9
A01p39550 Brassica napus HOM05D001849 ORTHO05D004689 7.9e-278 960.7 869 58.2
SHI25232 Sapria himalayana HOM05D001849 ORTHO05D004689 5.5e-271 937.9 731 64.0
Nitab4.5_0004322g0010 Nicotiana tabacum HOM05D001849 ORTHO05D004689 3.3e-268 928.7 637 72.1
Hma1.2p1_0229F.1_g096760 Hydrangea macrophylla HOM05D001849 ORTHO05D004689 6.5e-240 834.7 525 77.7
AagrBONN_evm.TU.Sc2ySwM_362.2383 Anthoceros agrestis HOM05D001849 ORTHO05D004689 1.4e-237 827.0 889 49.2
Mapoly0024s0112 Marchantia polymorpha HOM05D001849 ORTHO05D004689 3.1e-234 815.8 869 49.6
Pp3c8_15880 Physcomitrium patens HOM05D001849 ORTHO05D004689 2.1e-230 803.1 876 49.4
CARHR088980 Cardamine hirsuta HOM05D001849 ORTHO05D004689 3.9e-208 729.2 499 73.5
BraA01t03995Z Brassica rapa HOM05D001849 ORTHO05D004689 3.3e-199 699.5 535 68.4
SMO304G0023 Selaginella moellendorffii HOM05D001849 ORTHO05D004689 3.6e-198 696.0 864 45.1
Ca_23411_v3 Cicer arietinum L. HOM05D001849 ORTHO05D004689 1.9e-191 673.7 458 69.9
Os11g0643700 Oryza sativa ssp. japonica HOM05D001849 ORTHO05D004689 5.6e-159 565.8 474 62.9
Ca_23412_v3 Cicer arietinum L. HOM05D001849 ORTHO05D004689 1.2e-153 548.1 405 70.6
Cpa.g.sc169.27 Carica papaya HOM05D001849 ORTHO05D004689 2.6e-127 460.7 319 73.0
CBR_g39720 Chara braunii HOM05D001849 ORTHO05D004689 4.8e-126 456.4 1010 33.8
SEGI_21815 Sequoiadendron giganteum HOM05D001849 ORTHO05D004689 8.0e-121 439.1 389 58.1
Cpa.g.sc169.28 Carica papaya HOM05D001849 ORTHO05D004689 2.1e-97 361.3 245 74.3
FAN05G4033 Fragaria x ananassa HOM05D001849 ORTHO05D004689 1.0e-83 315.8 193 75.6
CSS0033574 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 1.6e-76 292.0 225 68.0
CSS0020573 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 2.5e-74 284.6 233 63.9
QL11p014752 Quercus lobata HOM05D001849 ORTHO05D004689 2.0e-71 275.0 292 51.7
Cpa.g.sc169.30 Carica papaya HOM05D001849 ORTHO05D004689 3.3e-58 231.1 174 64.9
CSS0047517 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 3.1e-56 224.6 174 69.0
Glyma.16G010300 Glycine max HOM05D001849 ORTHO05D004689 1.7e-54 218.8 156 71.8
CSS0019722 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 7.4e-50 203.4 181 63.0
HPP92_021920 Vanilla planifolia HOM05D001849 ORTHO05D004689 3.9e-43 181.0 158 58.2
Lsat_1_v5_gn_3_42421 Lactuca sativa HOM05D001849 ORTHO05D004689 1.6e-41 175.6 163 57.1
SEGI_09459 Sequoiadendron giganteum HOM05D001849 ORTHO05D004689 4.8e-41 174.1 175 51.4
MBI18_g40032_MAGBIO Magnolia biondii HOM05D000132 ORTHO05D000058 1.9e-37 162.2 100 73.0
CSS0036362 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 6.3e-33 147.1 102 69.6
Lsat_1_v5_gn_8_46020 Lactuca sativa HOM05D001849 ORTHO05D004689 1.1e-32 146.4 95 78.9
CSS0036461 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 1.8e-32 145.6 101 69.3
Cpa.g.sc169.29 Carica papaya HOM05D001849 ORTHO05D004689 3.0e-27 128.3 99 64.6
Lsat_1_v5_gn_7_52500 Lactuca sativa HOM05D001849 ORTHO05D004689 3.3e-26 124.8 172 45.3
SEGI_30532 Sequoiadendron giganteum HOM05D001849 ORTHO05D004689 3.3e-26 124.8 89 65.2
HanXRQChr11g0341991 Helianthus annuus HOM05D001849 ORTHO05D004689 1.4e-24 119.4 90 66.7
CSS0004697 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 3.6e-20 104.8 101 54.5
Cre10.g425675 Chlamydomonas reinhardtii HOM05D001849 ORTHO05D004689 1.5e-18 99.4 228 29.8
PGSC0003DMG402004368 Solanum tuberosum HOM05D001849 ORTHO05D004689 2.6e-18 98.6 73 65.8
SEGI_11558 Sequoiadendron giganteum HOM05D001849 ORTHO05D004689 3.7e-17 94.7 93 54.8
Cpa.g.sc169.31 Carica papaya HOM05D001849 ORTHO05D004689 2.4e-16 92.0 51 78.4
MCO04G165 Micromonas commoda HOM05D001849 ORTHO05D004689 2.4e-16 92.0 395 26.8
MBI03_g16538_MAGBIO Magnolia biondii HOM05D001849 ORTHO05D004689 5.9e-15 87.4 67 58.2
MBI04_g26258_MAGBIO Magnolia biondii HOM05D001849 ORTHO05D004689 2.2e-14 85.5 79 54.4
PRCOL_00005073 Prasinoderma coloniale HOM05D001849 ORTHO05D004689 3.8e-14 84.7 674 22.8
MBI13_g27860_MAGBIO Magnolia biondii HOM05D001849 ORTHO05D004689 6.5e-14 84.0 53 69.8
MBI15_g17575_MAGBIO Magnolia biondii HOM05D001849 ORTHO05D004689 3.2e-13 81.6 53 67.9
Zm00001eb307710 Zea mays HOM05D001849 ORTHO05D004689 7.2e-13 80.5 74 59.5
BcaNung06672 Brassica carinata HOM05D001849 ORTHO05D004689 1.8e-11 75.9 206 28.6
BolC2t10453H Brassica oleracea HOM05D001849 ORTHO05D004689 1.8e-08 65.9 52 59.6
CSS0017686 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 1.8e-08 65.9 50 58.0
C02p44100 Brassica napus HOM05D001849 ORTHO05D004689 2.4e-08 65.5 52 59.6
CSS0002239 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 7.0e-08 63.9 41 70.7
Actinidia08004 Actinidia chinensis HOM05D001849 ORTHO05D004689 6.5e-06 57.4 36 75.0
C01p30760 Brassica napus HOM05D001849 ORTHO05D042635 8.5e-06 57.0 92 41.3
SGA_v2.0_scaffold7G03828 Striga asiatica HOM05D016705 ORTHO05D004689 8.5e-06 57.0 140 32.9


User provided reference genes

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