Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.J01212 Eucalyptus grandis HOM05D003957 ORTHO05D004833 1.9e-253 878.6 428 100.0
PGR044G1355 Punica granatum HOM05D003957 ORTHO05D004833 2.2e-201 705.7 431 79.8
Dinv09346 Davidia involucrata HOM05D003957 ORTHO05D004833 2.7e-199 698.7 431 78.0
Cfa010778 Carpinus fangiana HOM05D003957 ORTHO05D004833 1.9e-197 692.6 431 76.8
Thecc.01G409500 Theobroma cacao HOM05D003957 ORTHO05D004833 2.5e-197 692.2 433 77.6
Actinidia20662 Actinidia chinensis HOM05D003957 ORTHO05D004833 2.2e-193 679.1 431 76.1
Ciclev10031578m.g Citrus clementina HOM05D003957 ORTHO05D004833 5.5e-192 674.5 431 75.6
Atru.chr11.2608 Acer truncatum HOM05D003957 ORTHO05D004833 7.1e-192 674.1 432 75.0
COL.COLO4_04863 Corchorus olitorius HOM05D003957 ORTHO05D004833 7.1e-192 674.1 426 76.8
TWI09G1258 Tripterygium wilfordii HOM05D003957 ORTHO05D004833 2.7e-191 672.2 425 76.7
Peaxi162Scf00953g00417 Petunia axillaris HOM05D003957 ORTHO05D004833 6.7e-190 667.5 431 74.7
Potri.001G264900 Populus trichocarpa HOM05D003957 ORTHO05D004833 1.1e-189 666.8 435 74.7
CiPaw.14G000800 Carya illinoinensis HOM05D003957 ORTHO05D004833 1.5e-189 666.4 426 73.9
RcHm_v2.0_Chr1g0316511 Rosa chinensis HOM05D003957 ORTHO05D004833 1.1e-187 660.2 433 75.3
MELO3C023982.2 Cucumis melo HOM05D003957 ORTHO05D004833 3.1e-187 658.7 427 73.3
Sabra09G0044100 Salix brachista HOM05D003957 ORTHO05D004833 4.0e-187 658.3 436 73.2
CsaV3_3G032090 Cucumis sativus L. HOM05D003957 ORTHO05D004833 9.0e-187 657.1 427 73.1
Oeu014587.1 Olea europaea HOM05D003957 ORTHO05D004833 9.0e-187 657.1 427 71.9
Glyma.08G090300 Glycine max HOM05D003957 ORTHO05D004833 2.0e-186 656.0 427 73.8
Rhsim01G0129100 Rhododendron simsii HOM05D003957 ORTHO05D004833 4.5e-186 654.8 431 72.9
Prupe.2G015300 Prunus persica HOM05D003957 ORTHO05D004833 5.8e-186 654.4 370 82.7
Cpa.g.sc125.12 Carica papaya HOM05D003957 ORTHO05D004833 7.6e-186 654.1 377 82.2
Ca_19580_v3 Cicer arietinum L. HOM05D003957 ORTHO05D004833 4.9e-185 651.4 430 73.5
Gorai.004G171700 Gossypium raimondii HOM05D003957 ORTHO05D004833 6.5e-185 651.0 471 69.2
Nitab4.5_0002918g0090 Nicotiana tabacum HOM05D003531 ORTHO05D004833 6.5e-185 651.0 427 74.7
Manes.10G140900 Manihot esculenta HOM05D003957 ORTHO05D004833 1.4e-184 649.8 376 81.1
GSVIVG01032128001 Vitis vinifera HOM05D003957 ORTHO05D004833 1.4e-184 649.8 400 77.8
Lj3g0013934 Lotus japonicus HOM05D003957 ORTHO05D004833 3.2e-184 648.7 425 73.6
FvH4_7g01180 Fragaria vesca HOM05D003957 ORTHO05D004833 7.1e-184 647.5 370 82.7
Sabra16G0162800 Salix brachista HOM05D003957 ORTHO05D004833 7.1e-184 647.5 461 69.6
MD02G1308500 Malus domestica HOM05D003957 ORTHO05D004833 1.2e-183 646.7 370 81.6
Sed0014830 Sechium edule HOM05D003957 ORTHO05D004833 1.2e-183 646.7 428 72.0
MSTRG.20577 Avicennia marina HOM05D003957 ORTHO05D004833 1.6e-183 646.4 434 71.4
ClCG10G012310 Citrullus lanatus HOM05D003957 ORTHO05D004833 1.6e-183 646.4 427 72.6
Cc07_g18910 Coffea canephora HOM05D003957 ORTHO05D004833 2.7e-183 645.6 430 71.6
Gohir.D08G164700 Gossypium hirsutum HOM05D003957 ORTHO05D004833 4.6e-183 644.8 378 81.0
PGSC0003DMG400006795 Solanum tuberosum HOM05D003957 ORTHO05D004833 6.0e-183 644.4 432 72.9
MD07G1012900 Malus domestica HOM05D003957 ORTHO05D004833 7.9e-183 644.0 370 81.1
Hund21483 Selenicereus undatus HOM05D003957 ORTHO05D004833 1.0e-182 643.7 428 71.3
Solyc01g087290.3 Solanum lycopersicum HOM05D003957 ORTHO05D004833 1.3e-182 643.3 432 72.5
CiPaw.13G005800 Carya illinoinensis HOM05D003957 ORTHO05D004833 1.8e-182 642.9 406 76.4
Gohir.A08G143700 Gossypium hirsutum HOM05D003957 ORTHO05D004833 3.0e-182 642.1 377 81.2
Phvul.011G009800 Phaseolus vulgaris HOM05D003957 ORTHO05D004833 3.0e-182 642.1 427 72.6
Sopen01g034330 Solanum pennellii HOM05D003957 ORTHO05D004833 3.0e-182 642.1 432 72.7
arahy.Tifrunner.gnm1.ann1.MG259H Arachis hypogaea HOM05D003957 ORTHO05D004833 6.7e-182 641.0 426 72.8
arahy.Tifrunner.gnm1.ann1.X54W53 Arachis hypogaea HOM05D003957 ORTHO05D004833 8.7e-182 640.6 431 72.6
CAN.G219.36 Capsicum annuum HOM05D003957 ORTHO05D004833 1.1e-181 640.2 420 73.8
SGA_v2.0_scaffold119G32740 Striga asiatica HOM05D003957 ORTHO05D004833 1.1e-181 640.2 432 71.3
Nitab4.5_0008353g0020 Nicotiana tabacum HOM05D003957 ORTHO05D004833 9.7e-181 637.1 403 76.7
FAN10G3195 Fragaria x ananassa HOM05D003957 ORTHO05D004833 3.7e-180 635.2 429 73.7
FAN03G2622 Fragaria x ananassa HOM05D003957 ORTHO05D004833 1.1e-179 633.6 427 73.3
FAN06G1255 Fragaria x ananassa HOM05D003957 ORTHO05D004833 1.4e-179 633.3 429 74.1
TPR.G3690 Trifolium pratense HOM05D003957 ORTHO05D004833 1.8e-179 632.9 442 71.3
TWI73G1181 Tripterygium wilfordii HOM05D003957 ORTHO05D004833 3.1e-179 632.1 371 80.9
CSS0035789 Camellia sinensis var. sinensis HOM05D003957 ORTHO05D004833 2.6e-178 629.0 377 79.8
EL10Ac2g04341 Beta vulgaris HOM05D003531 ORTHO05D004354 1.0e-177 627.1 433 69.5
Lalb_Chr25g0282971 Lupinus albus HOM05D003957 ORTHO05D004833 2.2e-177 625.9 376 78.2
Psat5g208720 Pisum sativum HOM05D003957 ORTHO05D004833 2.2e-177 625.9 373 79.1
CANSAT80G0271 Cannabis sativa HOM05D003957 ORTHO05D004833 2.9e-177 625.5 427 70.3
HanXRQChr01g0016501 Helianthus annuus HOM05D003957 ORTHO05D004833 8.5e-177 624.0 436 69.7
VMungo1127G1153 Vigna mungo HOM05D003957 ORTHO05D004833 8.5e-177 624.0 466 66.3
SalBow5G1725 Salvia bowleyana HOM05D003957 ORTHO05D004833 1.9e-176 622.9 431 69.1
VMungo1080G1779 Vigna mungo HOM05D003957 ORTHO05D004833 2.5e-176 622.5 372 78.2
Nn2g15304 Nelumbo nucifera HOM05D003957 ORTHO05D004833 5.5e-176 621.3 430 69.5
Potri.009G059900 Populus trichocarpa HOM05D003957 ORTHO05D004833 7.2e-176 620.9 374 78.9
SalBow5G3453 Salvia bowleyana HOM05D003957 ORTHO05D004833 9.4e-176 620.5 431 68.9
Sopen01g034340 Solanum pennellii HOM05D003957 ORTHO05D004833 9.4e-176 620.5 371 79.5
Medtr4g037515 Medicago truncatula HOM05D003957 ORTHO05D004833 1.2e-175 620.2 433 70.4
Solyc01g087300.3 Solanum lycopersicum HOM05D003957 ORTHO05D004833 1.2e-175 620.2 371 79.5
AUR62009393 Chenopodium quinoa HOM05D003957 ORTHO05D004833 2.7e-175 619.0 432 68.3
Glyma.10G089600 Glycine max HOM05D003957 ORTHO05D004833 2.7e-175 619.0 371 78.4
Migut.B01290 Erythranthe guttata HOM05D003957 ORTHO05D004833 6.1e-175 617.8 434 68.9
Lj3g0028128 Lotus japonicus HOM05D003957 ORTHO05D004833 1.8e-174 616.3 370 78.9
ECA248G0218 Erigeron canadensis HOM05D003957 ORTHO05D004833 3.9e-174 615.1 419 70.9
THA.LOC104809852 Tarenaya hassleriana HOM05D003957 ORTHO05D004833 3.9e-174 615.1 373 77.2
TPR.G35301 Trifolium pratense HOM05D003957 ORTHO05D004833 5.1e-174 614.8 403 72.2
MBI02_g05667_MAGBIO Magnolia biondii HOM05D003957 ORTHO05D004833 4.3e-173 611.7 446 67.0
Phvul.005G024600 Phaseolus vulgaris HOM05D003957 ORTHO05D004833 4.3e-173 611.7 369 77.5
Medtr3g030890 Medicago truncatula HOM05D003957 ORTHO05D004833 2.8e-172 609.0 370 77.3
Sed0012226 Sechium edule HOM05D003957 ORTHO05D004833 6.3e-172 607.8 371 76.0
arahy.Tifrunner.gnm1.ann1.N7MVRX Arachis hypogaea HOM05D003957 ORTHO05D004833 1.4e-171 606.7 370 77.0
THA.LOC104817580 Tarenaya hassleriana HOM05D003957 ORTHO05D004833 2.0e-170 602.8 381 73.8
QL04p008303 Quercus lobata HOM05D003957 ORTHO05D004833 2.6e-170 602.4 375 77.3
Lsat_1_v5_gn_1_106241 Lactuca sativa HOM05D003957 ORTHO05D004833 3.8e-169 598.6 429 69.2
CAN.G219.37 Capsicum annuum HOM05D003957 ORTHO05D004833 1.2e-167 593.6 353 79.6
TAR623G1381 Trochodendron aralioides HOM05D003957 ORTHO05D004833 1.2e-167 593.6 365 77.3
ATR0332G004 Amborella trichopoda HOM05D003957 ORTHO05D004833 2.7e-167 592.4 427 68.9
Thhalv10023495m.g Eutrema salsugineum HOM05D003957 ORTHO05D004833 2.7e-167 592.4 375 73.3
PSO339G1767 Papaver somniferum HOM05D003957 ORTHO05D004833 3.6e-167 592.0 432 67.8
Ca_14452_v3 Cicer arietinum L. HOM05D003957 ORTHO05D004833 3.9e-166 588.6 369 76.2
Ca_14453_v3 Cicer arietinum L. HOM05D003957 ORTHO05D004833 3.9e-166 588.6 369 76.2
A06p39430 Brassica napus HOM05D003957 ORTHO05D004833 5.1e-166 588.2 375 73.6
C07p38840 Brassica napus HOM05D003957 ORTHO05D004833 5.1e-166 588.2 375 73.6
BolC6t39590H Brassica oleracea HOM05D003957 ORTHO05D004833 5.1e-166 588.2 408 68.9
BraA06t26858Z Brassica rapa HOM05D003957 ORTHO05D004833 5.1e-166 588.2 375 73.6
Thhalv10004383m.g Eutrema salsugineum HOM05D003957 ORTHO05D004833 6.7e-166 587.8 371 73.3
AL5G46370 Arabidopsis lyrata HOM05D003957 ORTHO05D004833 1.1e-165 587.0 362 75.7
BcaB03g14880 Brassica carinata HOM05D003957 ORTHO05D004833 1.1e-165 587.0 389 70.7
AT3G63510 Arabidopsis thaliana HOM05D003957 ORTHO05D004833 2.0e-165 586.3 372 73.9
BcaC08g46558 Brassica carinata HOM05D003957 ORTHO05D004833 2.0e-165 586.3 366 74.6
BraA07t31319Z Brassica rapa HOM05D003957 ORTHO05D004833 3.3e-165 585.5 366 74.9
Carub.0008s0751 Capsella rubella HOM05D003957 ORTHO05D004833 4.4e-165 585.1 369 73.2
AL8G20240 Arabidopsis lyrata HOM05D003957 ORTHO05D004833 5.7e-165 584.7 372 72.8
Aqoxy1G00278 Aquilegia oxysepala HOM05D003957 ORTHO05D004833 7.4e-165 584.3 438 65.8
AT5G47970 Arabidopsis thaliana HOM05D003957 ORTHO05D004833 7.4e-165 584.3 369 73.4
BolC7t44403H Brassica oleracea HOM05D003957 ORTHO05D004833 7.4e-165 584.3 369 73.2
PSO384G3990 Papaver somniferum HOM05D003957 ORTHO05D004833 2.2e-164 582.8 379 72.8
DCAR_003217 Daucus carota HOM05D003957 ORTHO05D004833 4.8e-164 581.6 382 72.8
Sp2g18450 Schrenkiella parvula HOM05D003957 ORTHO05D004833 4.1e-163 578.6 369 72.6
CARHR184310 Cardamine hirsuta HOM05D003957 ORTHO05D004833 5.3e-163 578.2 372 72.0
Sp5g26390 Schrenkiella parvula HOM05D003957 ORTHO05D004833 2.0e-162 576.2 391 69.1
BcaC06g30833 Brassica carinata HOM05D003957 ORTHO05D004833 1.0e-161 573.9 369 72.9
A07p37580 Brassica napus HOM05D003957 ORTHO05D004833 1.7e-161 573.2 391 70.1
C06p45340 Brassica napus HOM05D003957 ORTHO05D004833 2.5e-160 569.3 433 64.4
Aa31LG5G18360 Aethionema arabicum HOM05D003957 ORTHO05D004833 1.4e-155 553.5 374 70.1
AUR62023075 Chenopodium quinoa HOM05D003957 ORTHO05D004833 1.7e-153 546.6 407 65.4
AUR62043481 Chenopodium quinoa HOM05D003957 ORTHO05D004833 1.7e-153 546.6 407 65.4
Os04g0278900 Oryza sativa ssp. japonica HOM05D003957 ORTHO05D004833 8.0e-151 537.7 350 71.4
Sc11g0009110 Simmondsia chinensis HOM05D003957 ORTHO05D004833 1.0e-150 537.3 322 78.9
arahy.Tifrunner.gnm1.ann1.74EFZ5 Arachis hypogaea HOM05D003957 ORTHO05D004833 1.1e-144 517.3 370 67.8
vmacro21189 Vaccinium macrocarpon HOM05D003957 ORTHO05D004833 4.7e-143 511.9 399 64.2
Lj7A573G28 Lonicera japonica HOM05D003957 ORTHO05D004833 3.4e-141 505.8 399 64.7
Zm00001eb087020 Zea mays HOM05D003957 ORTHO05D004833 4.8e-140 501.9 352 65.6
SEGI_24417 Sequoiadendron giganteum HOM05D003957 ORTHO05D004833 5.4e-139 498.4 356 65.4
DCAR_029679 Daucus carota HOM05D003957 ORTHO05D004833 1.6e-138 496.9 317 73.8
HPP92_026038 Vanilla planifolia HOM05D003957 ORTHO05D004833 5.0e-137 491.9 339 68.4
Glyma.05G135100 Glycine max HOM05D003957 ORTHO05D004833 1.8e-131 473.4 303 75.2
Duzib138G0145 Durio zibethinus HOM05D003957 ORTHO05D004833 9.2e-131 471.1 428 60.0
Psat7g196440 Pisum sativum HOM05D003957 ORTHO05D004833 2.7e-130 469.5 315 71.1
unitig_749.g14329 Utricularia gibba HOM05D003957 ORTHO05D004833 1.9e-128 463.4 365 62.7
Aa31LG10G17380 Aethionema arabicum HOM05D003957 ORTHO05D004833 2.6e-125 453.0 353 63.5
Mapoly0013s0118 Marchantia polymorpha HOM05D003957 ORTHO05D004833 5.0e-121 438.7 368 57.1
Pp3s97_50 Physcomitrium patens HOM05D003957 ORTHO05D004833 2.5e-120 436.4 360 58.1
SMO174G0131 Selaginella moellendorffii HOM05D003957 ORTHO05D004833 4.1e-115 419.1 322 59.9
Pp3c7_21950 Physcomitrium patens HOM05D003957 ORTHO05D004833 7.8e-114 414.8 409 52.6
Lalb_Chr01g0000361 Lupinus albus HOM05D003957 ORTHO05D004833 6.8e-110 401.7 260 73.5
AagrBONN_evm.TU.Sc2ySwM_117.3237 Anthoceros agrestis HOM05D003957 ORTHO05D004833 4.6e-106 389.0 287 63.1
Carub.0005s3012 Capsella rubella HOM05D003957 ORTHO05D004833 1.2e-103 380.9 262 70.6
CBR_g45512 Chara braunii HOM05D003957 ORTHO05D004833 3.2e-99 366.3 340 49.4
HPP92_013484 Vanilla planifolia HOM05D003957 ORTHO05D004833 1.7e-97 360.5 269 65.8
CARHR291460 Cardamine hirsuta HOM05D003957 ORTHO05D004833 3.5e-90 336.3 191 79.1
MCO14G372 Micromonas commoda HOM05D003957 ORTHO05D004833 1.7e-84 317.4 373 45.3
Oeu006567.1 Olea europaea HOM05D003957 ORTHO05D004833 4.6e-82 309.3 371 47.2
Aa31LG11G7420 Aethionema arabicum HOM05D003957 ORTHO05D004833 9.6e-72 275.0 158 79.7
Cre15.g636896 Chlamydomonas reinhardtii HOM05D003957 ORTHO05D004833 6.1e-66 255.8 579 30.1
PRCOL_00006504 Prasinoderma coloniale HOM05D003957 ORTHO05D004833 7.2e-59 232.3 382 35.9
FAN03G1487 Fragaria x ananassa HOM05D003957 ORTHO05D004833 3.9e-57 226.5 142 73.2
PRCOL_00000364 Prasinoderma coloniale HOM05D003957 ORTHO05D004833 1.1e-54 218.4 343 39.4
MCO15G235 Micromonas commoda HOM05D003957 ORTHO05D004833 3.2e-51 206.8 259 42.9
Aa31LG11G7410 Aethionema arabicum HOM05D003957 ORTHO05D004833 3.3e-48 196.8 152 59.2
Ah.00g001360 Amaranthus hybridus HOM05D003957 ORTHO05D004833 5.3e-46 189.5 148 59.5
CSS0043854 Camellia sinensis var. sinensis HOM05D003957 ORTHO05D004833 1.7e-44 184.5 132 63.6
unitig_749.g13713 Utricularia gibba HOM05D003957 ORTHO05D004833 5.7e-40 169.5 253 41.1
HPP92_013483 Vanilla planifolia HOM05D003957 ORTHO05D004833 2.8e-39 167.2 136 57.4
Gohir.D13G107450 Gossypium hirsutum HOM05D003957 ORTHO05D004833 4.4e-32 143.3 141 56.0
Gorai.007G239900 Gossypium raimondii HOM05D003957 ORTHO05D004833 3.7e-31 140.2 141 55.3
unitig_749.g13714 Utricularia gibba HOM05D003957 ORTHO05D004833 3.7e-31 140.2 85 75.3
CSS0024453 Camellia sinensis var. sinensis HOM05D003957 ORTHO05D004833 4.5e-29 133.3 77 77.9
RcHm_v2.0_Chr1g0316481 Rosa chinensis HOM05D003957 ORTHO05D037444 7.7e-29 132.5 82 72.0
PRCOL_00003547 Prasinoderma coloniale HOM05D003957 ORTHO05D004833 2.2e-28 131.0 299 31.8
Cfa010787 Carpinus fangiana HOM05D003957 ORTHO05D004833 5.0e-28 129.8 125 59.2
Cfa010780 Carpinus fangiana HOM05D003957 ORTHO05D004833 1.1e-27 128.6 110 60.0
CSS0008275 Camellia sinensis var. sinensis HOM05D003957 ORTHO05D004833 6.1e-26 122.9 113 57.5
CSS0028199 Camellia sinensis var. sinensis HOM05D003957 ORTHO05D004833 5.2e-25 119.8 75 73.3
arahy.Tifrunner.gnm1.ann1.2RNN62 Arachis hypogaea HOM05D000368 ORTHO05D000289 2.0e-24 117.9 72 75.0
Haze_03193 Corylus avellana HOM05D000309 ORTHO05D000008 6.3e-23 112.8 60 86.7
vmacro21188 Vaccinium macrocarpon HOM05D003957 ORTHO05D004833 1.4e-22 111.7 82 64.6
Lalb_Chr01g0000371 Lupinus albus HOM05D003957 ORTHO05D004833 3.1e-22 110.5 110 55.5
Gohir.D04G098500 Gossypium hirsutum HOM05D003957 ORTHO05D004833 7.7e-21 105.9 77 64.9
Gorai.009G400700 Gossypium raimondii HOM05D003957 ORTHO05D004833 1.3e-20 105.1 90 57.8
Sopen01g034450 Solanum pennellii HOM05D003957 ORTHO05D030633 2.3e-20 104.4 153 41.8
Prupe.2G015100 Prunus persica HOM05D002736 ORTHO05D003882 5.0e-20 103.2 60 78.3
Solyc01g087410.4 Solanum lycopersicum HOM05D003531 ORTHO05D004354 4.2e-19 100.1 153 40.5
Ah.00g001340 Amaranthus hybridus HOM05D003957 ORTHO05D004833 1.2e-18 98.6 106 50.9
BolC6t39673H Brassica oleracea HOM05D003957 ORTHO05D004833 5.2e-17 93.2 69 65.2
Solyc01g087390.2 Solanum lycopersicum HOM05D003531 ORTHO05D004354 3.7e-15 87.0 146 37.7
Solyc01g087370.2 Solanum lycopersicum HOM05D003531 ORTHO05D030633 1.2e-13 82.0 146 37.0
Thecc.09G345400 Theobroma cacao HOM05D003957 ORTHO05D037444 9.5e-11 72.4 53 64.2
Sopen01g034430 Solanum pennellii HOM05D003957 ORTHO05D030633 1.6e-10 71.6 86 43.0
QL04p008294 Quercus lobata HOM05D003957 ORTHO05D037444 4.7e-10 70.1 54 63.0
Sopen01g034360 Solanum pennellii HOM05D003531 ORTHO05D004354 3.7e-07 60.5 66 53.0


User provided reference genes

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