Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.H04042 Eucalyptus grandis HOM05D006900 ORTHO05D008651 4.5e-217 758.4 669 100.0
Nitab4.5_0010299g0060 Nicotiana tabacum HOM05D006900 ORTHO05D008651 4.3e-111 406.4 638 60.0
PGR004G2297 Punica granatum HOM05D006900 ORTHO05D008651 2.2e-102 377.5 579 71.2
EL10Ac3g05503 Beta vulgaris HOM05D006900 ORTHO05D008651 9.1e-101 372.1 566 47.2
TAR362G0296 Trochodendron aralioides HOM05D006900 ORTHO05D008651 1.4e-96 358.2 587 69.0
Gorai.011G199800 Gossypium raimondii HOM05D006900 ORTHO05D008651 1.1e-95 355.1 585 67.9
Gohir.D10G178700 Gossypium hirsutum HOM05D006900 ORTHO05D008651 1.5e-95 354.8 585 67.9
Gohir.A10G171600 Gossypium hirsutum HOM05D006900 ORTHO05D008651 3.3e-95 353.6 585 68.0
Duzib212G0988 Durio zibethinus HOM05D006900 ORTHO05D008651 2.8e-94 350.5 577 69.8
QL06p012004 Quercus lobata HOM05D006900 ORTHO05D008651 8.2e-94 349.0 586 68.8
Rhsim02G0004000 Rhododendron simsii HOM05D006900 ORTHO05D008651 8.2e-94 349.0 650 49.8
Thecc.04G300100 Theobroma cacao HOM05D006900 ORTHO05D008651 1.8e-93 347.8 587 68.5
Hma1.2p1_0013F.1_g008570 Hydrangea macrophylla HOM05D006900 ORTHO05D008651 9.1e-93 345.5 579 69.3
Cfa015319 Carpinus fangiana HOM05D006900 ORTHO05D008651 1.5e-92 344.7 585 68.4
GSVIVG01034997001 Vitis vinifera HOM05D006900 ORTHO05D008651 7.7e-92 342.4 575 68.0
Dinv15174 Davidia involucrata HOM05D006900 ORTHO05D008651 1.3e-91 341.7 577 69.2
Haze_01304 Corylus avellana HOM05D006900 ORTHO05D008651 5.0e-91 339.7 585 68.2
Nn3g21725 Nelumbo nucifera HOM05D006900 ORTHO05D008651 1.4e-90 338.2 594 67.5
TPR.G16830 Trifolium pratense HOM05D006900 ORTHO05D008651 1.9e-90 337.8 587 62.4
Sopen04g004200 Solanum pennellii HOM05D006900 ORTHO05D008651 2.5e-90 337.4 598 65.4
COL.COLO4_34620 Corchorus olitorius HOM05D006900 ORTHO05D008651 3.2e-90 337.0 587 66.8
Peaxi162Scf00681g00223 Petunia axillaris HOM05D006900 ORTHO05D008651 9.4e-90 335.5 589 66.4
CSS0034541 Camellia sinensis var. sinensis HOM05D006900 ORTHO05D008651 1.6e-89 334.7 587 67.1
Solyc04g009020.4 Solanum lycopersicum HOM05D006900 ORTHO05D008651 2.1e-89 334.3 597 65.3
Lj6A690T75 Lonicera japonica HOM05D006900 ORTHO05D008651 2.7e-89 334.0 573 68.6
PGSC0003DMG400011531 Solanum tuberosum HOM05D006900 ORTHO05D008651 6.1e-89 332.8 597 65.2
Actinidia13360 Actinidia chinensis HOM05D006900 ORTHO05D008651 1.0e-88 332.0 596 66.1
Prupe.1G117800 Prunus persica HOM05D006900 ORTHO05D008651 1.4e-88 331.6 560 69.1
CAN.G274.12 Capsicum annuum HOM05D006900 ORTHO05D008651 6.7e-88 329.3 596 64.9
Manes.03G204600 Manihot esculenta HOM05D006900 ORTHO05D008651 1.1e-87 328.6 579 68.2
arahy.Tifrunner.gnm1.ann1.88EKIY Arachis hypogaea HOM05D006900 ORTHO05D008651 2.6e-87 327.4 581 67.0
Nitab4.5_0004979g0030 Nicotiana tabacum HOM05D006900 ORTHO05D008651 4.4e-87 326.6 609 64.4
MD13G1154800 Malus domestica HOM05D006900 ORTHO05D008651 7.4e-87 325.9 569 68.0
arahy.Tifrunner.gnm1.ann1.Z0RY6M Arachis hypogaea HOM05D006900 ORTHO05D008651 1.3e-86 325.1 581 66.8
Potri.010G145000 Populus trichocarpa HOM05D006900 ORTHO05D008651 3.7e-86 323.6 580 65.9
HanXRQChr13g0393421 Helianthus annuus HOM05D006900 ORTHO05D008651 2.6e-84 317.4 576 66.0
Atru.chr4.3007 Acer truncatum HOM05D006900 ORTHO05D008651 5.9e-84 316.2 585 66.0
Lalb_Chr07g0182071 Lupinus albus HOM05D006900 ORTHO05D008651 1.3e-83 315.1 583 64.8
Psat0s740g0280 Pisum sativum HOM05D006900 ORTHO05D008651 1.7e-83 314.7 572 67.1
Lj4g0008712 Lotus japonicus HOM05D006900 ORTHO05D008651 2.2e-83 314.3 571 66.4
Sabra10G0112000 Salix brachista HOM05D006900 ORTHO05D008651 3.8e-83 313.5 585 66.2
Ciclev10004521m.g Citrus clementina HOM05D006900 ORTHO05D008651 1.1e-82 312.0 583 66.0
TWI09G0824 Tripterygium wilfordii HOM05D006900 ORTHO05D008651 1.5e-82 311.6 586 66.6
MBI18_g32026_MAGBIO Magnolia biondii HOM05D006900 ORTHO05D008651 2.5e-82 310.8 553 68.9
Migut.G00056 Erythranthe guttata HOM05D006900 ORTHO05D008651 2.1e-81 307.8 576 65.3
Lsat_1_v5_gn_6_18120 Lactuca sativa HOM05D006900 ORTHO05D008651 4.7e-81 306.6 586 65.2
CiPaw.02G075100 Carya illinoinensis HOM05D006900 ORTHO05D008651 6.1e-81 306.2 528 71.2
Cc03_g00870 Coffea canephora HOM05D006900 ORTHO05D008651 6.1e-81 306.2 554 68.1
Aqoxy5G02843 Aquilegia oxysepala HOM05D006900 ORTHO05D008651 1.4e-80 305.1 548 68.2
unitig_748.g8700 Utricularia gibba HOM05D006900 ORTHO05D008651 1.4e-80 305.1 588 64.3
MSTRG.10150 Avicennia marina HOM05D006900 ORTHO05D008651 2.3e-80 304.3 596 64.6
VMungo1215G0487 Vigna mungo HOM05D006900 ORTHO05D008651 2.3e-80 304.3 588 64.1
Glyma.07G240000 Glycine max HOM05D006900 ORTHO05D008651 4.0e-80 303.5 575 66.4
ECA233G1261 Erigeron canadensis HOM05D006900 ORTHO05D008651 6.7e-80 302.8 546 69.2
Glyma.17G033400 Glycine max HOM05D006900 ORTHO05D008651 6.7e-80 302.8 575 67.0
THA.LOC104820304 Tarenaya hassleriana HOM05D006900 ORTHO05D008651 6.7e-80 302.8 573 68.4
Aa31LG8G4070 Aethionema arabicum HOM05D006900 ORTHO05D008651 1.2e-79 302.0 568 65.7
SGA_v2.0_scaffold104G30080 Striga asiatica HOM05D006900 ORTHO05D008651 1.2e-79 302.0 574 65.9
AUR62039284 Chenopodium quinoa HOM05D006900 ORTHO05D008651 2.0e-79 301.2 546 68.9
CANSAT64G2951 Cannabis sativa HOM05D006900 ORTHO05D008651 2.6e-79 300.8 564 67.2
CARHR092290 Cardamine hirsuta HOM05D006900 ORTHO05D008651 3.3e-79 300.4 574 65.7
Thhalv10020271m.g Eutrema salsugineum HOM05D006900 ORTHO05D008651 3.3e-79 300.4 574 65.7
AUR62016204 Chenopodium quinoa HOM05D006900 ORTHO05D008651 4.4e-79 300.1 546 68.7
Sp3g15260 Schrenkiella parvula HOM05D006900 ORTHO05D008651 4.4e-79 300.1 573 64.7
BraA05t22092Z Brassica rapa HOM05D006900 ORTHO05D008651 7.5e-79 299.3 579 65.3
Medtr4g122060 Medicago truncatula HOM05D006900 ORTHO05D008651 7.5e-79 299.3 582 62.7
A05p32690 Brassica napus HOM05D006900 ORTHO05D008651 1.3e-78 298.5 579 65.3
PSO357G0537 Papaver somniferum HOM05D006900 ORTHO05D008651 1.3e-78 298.5 607 62.3
C05p49400 Brassica napus HOM05D006900 ORTHO05D008651 2.8e-78 297.4 579 65.1
RcHm_v2.0_Chr4g0425111 Rosa chinensis HOM05D006900 ORTHO05D008651 1.4e-77 295.0 574 65.7
BcaC05g28835 Brassica carinata HOM05D006900 ORTHO05D008651 1.8e-77 294.7 576 64.4
BolC5t33686H Brassica oleracea HOM05D006900 ORTHO05D008651 1.8e-77 294.7 576 64.4
BcaB06g25797 Brassica carinata HOM05D006900 ORTHO05D008651 5.3e-77 293.1 571 64.4
PSO170G0176 Papaver somniferum HOM05D006900 ORTHO05D008651 9.1e-77 292.4 615 61.1
AL3G30020 Arabidopsis lyrata HOM05D006900 ORTHO05D008651 5.9e-76 289.7 571 64.3
ClCG05G006560 Citrullus lanatus HOM05D006900 ORTHO05D008651 5.9e-76 289.7 585 63.1
Carub.0003s1679 Capsella rubella HOM05D006900 ORTHO05D008651 7.7e-76 289.3 573 64.2
Phvul.003G114100 Phaseolus vulgaris HOM05D006900 ORTHO05D008651 7.7e-76 289.3 553 65.5
FAN07G1219 Fragaria x ananassa HOM05D006900 ORTHO05D008651 2.2e-75 287.7 568 63.9
CsaV3_3G015170 Cucumis sativus L. HOM05D006900 ORTHO05D008651 2.9e-75 287.3 567 64.2
CDE12G0762 Ceratophyllum demersum HOM05D006900 ORTHO05D008651 5.5e-74 283.1 582 62.7
FvH4_4g19660 Fragaria vesca HOM05D006900 ORTHO05D008651 1.6e-73 281.6 568 63.7
MELO3C006715.2 Cucumis melo HOM05D006900 ORTHO05D008651 2.1e-73 281.2 567 63.3
FAN12G3178 Fragaria x ananassa HOM05D006900 ORTHO05D008651 6.1e-73 279.6 570 63.9
Ah.04g156910 Amaranthus hybridus HOM05D006900 ORTHO05D008651 3.0e-72 277.3 582 62.7
vmacro15184 Vaccinium macrocarpon HOM05D006900 ORTHO05D008651 2.2e-70 271.2 597 62.6
Sc15g0003210 Simmondsia chinensis HOM05D006900 ORTHO05D008651 2.8e-70 270.8 574 64.1
ATR0693G010 Amborella trichopoda HOM05D006900 ORTHO05D008651 1.1e-69 268.9 588 62.1
Zm00001eb014810 Zea mays HOM05D006900 ORTHO05D008651 4.2e-66 256.9 561 62.9
Sed0008833 Sechium edule HOM05D006900 ORTHO05D008651 2.3e-64 251.1 520 65.8
Hund03124 Selenicereus undatus HOM05D006900 ORTHO05D008651 7.5e-63 246.1 618 54.5
Hma1.2p1_0013F.1_g008580 Hydrangea macrophylla HOM05D006900 ORTHO05D008651 2.8e-62 244.2 181 68.5
SalBow8G4068 Salvia bowleyana HOM05D006900 ORTHO05D008651 1.7e-59 235.0 177 64.4
Ca_21442_v3 Cicer arietinum L. HOM05D006900 ORTHO05D008651 3.3e-58 230.7 178 62.9
DCAR_030472 Daucus carota HOM05D006900 ORTHO05D008651 2.1e-57 228.0 577 53.9
AT3G17040 Arabidopsis thaliana HOM05D006900 ORTHO05D008651 1.2e-55 222.2 187 60.4
CDE01G0483 Ceratophyllum demersum HOM05D006900 ORTHO05D008651 1.3e-54 218.8 175 61.7
Os03g0308800 Oryza sativa ssp. japonica HOM05D006900 ORTHO05D008651 1.5e-47 195.3 166 58.4
CANSAT78G0722 Cannabis sativa HOM05D006900 ORTHO05D008651 2.6e-39 167.9 179 51.4
Cpa.g.sc9.62 Carica papaya HOM05D006900 ORTHO05D008651 1.7e-38 165.2 197 62.9
SEGI_12330 Sequoiadendron giganteum HOM05D006900 ORTHO05D008651 2.2e-38 164.9 486 62.3
Gohir.A10G171900 Gossypium hirsutum HOM05D006900 ORTHO05D008651 2.1e-36 158.3 198 47.5
Mapoly0078s0010 Marchantia polymorpha HOM05D006900 ORTHO05D008651 1.7e-35 155.2 168 49.4
AagrBONN_evm.TU.Sc2ySwM_368.516 Anthoceros agrestis HOM05D006900 ORTHO05D008651 7.3e-34 149.8 193 44.0
Pp3c1_20310 Physcomitrium patens HOM05D006900 ORTHO05D008651 5.2e-32 143.7 116 57.8
SMO115G0152 Selaginella moellendorffii HOM05D006900 ORTHO05D008651 4.9e-30 137.1 110 60.9
Oeu032144.1 Olea europaea HOM05D006900 ORTHO05D008651 4.2e-29 134.0 124 75.8
Gohir.A10G171950 Gossypium hirsutum HOM05D006900 ORTHO05D008651 1.2e-28 132.5 111 63.1
CBR_g12177 Chara braunii HOM05D006900 ORTHO05D008651 1.6e-28 132.1 166 42.8
CSS0028196 Camellia sinensis var. sinensis HOM05D006900 ORTHO05D008651 3.9e-27 127.5 80 77.5
CSS0035140 Camellia sinensis var. sinensis HOM05D006900 ORTHO05D008651 4.3e-26 124.0 80 75.0
Cre09.g416200 Chlamydomonas reinhardtii HOM05D006900 ORTHO05D008651 1.7e-19 102.1 180 37.2
Oeu032012.1 Olea europaea HOM05D006900 ORTHO05D008651 8.1e-17 93.2 122 48.4
Cpa.g.sc9.61 Carica papaya HOM05D006900 ORTHO05D008651 2.4e-16 91.7 100 53.0
MCO01G208 Micromonas commoda HOM05D006900 ORTHO05D008651 6.9e-16 90.1 120 39.2
SGA_v2.0_scaffold157G37400 Striga asiatica HOM05D006900 ORTHO05D008651 7.1e-13 80.1 153 38.6
PRCOL_00006040 Prasinoderma coloniale HOM05D001216 ORTHO05D005688 1.3e-11 75.9 110 38.2


User provided reference genes

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