Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.H02672 Eucalyptus grandis HOM05D004365 ORTHO05D005123 1.1e-46 189.5 87 100.0
Eucgr.H02666 Eucalyptus grandis HOM05D004365 ORTHO05D005123 6.4e-39 163.7 84 89.3
GSVIVG01035016001 Vitis vinifera HOM05D004365 ORTHO05D005123 4.1e-38 161.0 84 88.1
Haze_01277 Corylus avellana HOM05D004365 ORTHO05D005123 7.0e-38 160.2 84 86.9
CSS0008168 Camellia sinensis var. sinensis HOM05D004365 ORTHO05D005123 1.6e-37 159.1 84 85.7
arahy.Tifrunner.gnm1.ann1.79Y4XM Arachis hypogaea HOM05D004365 ORTHO05D005123 2.7e-37 158.3 84 84.5
arahy.Tifrunner.gnm1.ann1.C4ZZV2 Arachis hypogaea HOM05D004365 ORTHO05D005123 2.7e-37 158.3 84 84.5
CANSAT54G2312 Cannabis sativa HOM05D004365 ORTHO05D005123 2.7e-37 158.3 84 85.7
Nn4g25611 Nelumbo nucifera HOM05D004365 ORTHO05D005123 2.7e-37 158.3 84 85.7
Sed0001961 Sechium edule HOM05D004365 ORTHO05D005123 2.7e-37 158.3 84 85.7
FvH4_4g19480 Fragaria vesca HOM05D004365 ORTHO05D005123 4.6e-37 157.5 84 84.5
FAN07G2773 Fragaria x ananassa HOM05D004365 ORTHO05D005123 4.6e-37 157.5 84 84.5
RcHm_v2.0_Chr4g0424591 Rosa chinensis HOM05D004365 ORTHO05D005123 4.6e-37 157.5 84 84.5
ClCG05G006460 Citrullus lanatus HOM05D004365 ORTHO05D005123 6.0e-37 157.1 84 84.5
Lalb_Chr18g0058831 Lupinus albus HOM05D004365 ORTHO05D005123 7.8e-37 156.8 84 84.5
Sed0006030 Sechium edule HOM05D004365 ORTHO05D005123 7.8e-37 156.8 84 84.5
Phvul.009G256100 Phaseolus vulgaris HOM05D004365 ORTHO05D005123 1.0e-36 156.4 84 85.7
TAR365G0998 Trochodendron aralioides HOM05D004365 ORTHO05D005123 1.0e-36 156.4 84 83.3
ECA246G3323 Erigeron canadensis HOM05D004365 ORTHO05D005123 1.3e-36 156.0 84 84.5
HanXRQChr05g0145921 Helianthus annuus HOM05D004365 ORTHO05D005123 1.3e-36 156.0 84 84.5
QL06p011635 Quercus lobata HOM05D004365 ORTHO05D005123 1.3e-36 156.0 83 84.3
Aqoxy2G02775 Aquilegia oxysepala HOM05D004365 ORTHO05D005123 1.7e-36 155.6 84 84.5
MSTRG.21775 Avicennia marina HOM05D004365 ORTHO05D005123 1.7e-36 155.6 84 84.5
CiPaw.01G139700 Carya illinoinensis HOM05D004365 ORTHO05D005123 1.7e-36 155.6 84 83.3
Cc03_g00970 Coffea canephora HOM05D004365 ORTHO05D005123 1.7e-36 155.6 84 84.5
FAN12G3053 Fragaria x ananassa HOM05D004365 ORTHO05D005123 1.7e-36 155.6 80 87.5
Rhsim02G0004900 Rhododendron simsii HOM05D004365 ORTHO05D005123 1.7e-36 155.6 80 88.8
vmacro15189 Vaccinium macrocarpon HOM05D004365 ORTHO05D005123 1.7e-36 155.6 80 88.8
Migut.N00047 Erythranthe guttata HOM05D004365 ORTHO05D005123 3.0e-36 154.8 84 84.5
Glyma.09G037400 Glycine max HOM05D004365 ORTHO05D005123 3.0e-36 154.8 84 84.5
Sc05g0009630 Simmondsia chinensis HOM05D004365 ORTHO05D005123 3.0e-36 154.8 84 82.1
Ah.13g072000 Amaranthus hybridus HOM05D004365 ORTHO05D005123 3.9e-36 154.5 84 82.1
Lsat_1_v5_gn_6_116841 Lactuca sativa HOM05D004365 ORTHO05D005123 3.9e-36 154.5 84 82.1
SGA_v2.0_scaffold119G32662 Striga asiatica HOM05D004365 ORTHO05D005123 3.9e-36 154.5 89 82.0
Actinidia13364 Actinidia chinensis HOM05D004365 ORTHO05D005123 6.6e-36 153.7 84 83.3
Ca_01870_v3 Cicer arietinum L. HOM05D004365 ORTHO05D005123 6.6e-36 153.7 84 83.3
Duzib212G0477 Durio zibethinus HOM05D004365 ORTHO05D005123 6.6e-36 153.7 84 82.1
Hma1.2p1_0013F.1_g008720 Hydrangea macrophylla HOM05D004365 ORTHO05D005123 6.6e-36 153.7 84 82.1
PSO761G0124 Papaver somniferum HOM05D004365 ORTHO05D005123 6.6e-36 153.7 84 82.1
AUR62016130 Chenopodium quinoa HOM05D004365 ORTHO05D005123 8.6e-36 153.3 83 83.1
Duzib052G0793 Durio zibethinus HOM05D004365 ORTHO05D005123 8.6e-36 153.3 84 82.1
FvH4_3g15650 Fragaria vesca HOM05D004365 ORTHO05D005123 1.1e-35 152.9 80 85.0
Lj6g0010863 Lotus japonicus HOM05D004365 ORTHO05D005123 1.1e-35 152.9 84 83.3
Hund03115 Selenicereus undatus HOM05D004365 ORTHO05D005123 1.1e-35 152.9 84 82.1
AUR62041403 Chenopodium quinoa HOM05D004365 ORTHO05D005123 1.9e-35 152.1 81 84.0
Medtr2g034520 Medicago truncatula HOM05D004365 ORTHO05D005123 1.9e-35 152.1 84 82.1
Nitab4.5_0000647g0090 Nicotiana tabacum HOM05D004365 ORTHO05D005123 1.9e-35 152.1 84 82.1
Peaxi162Scf00164g01133 Petunia axillaris HOM05D004365 ORTHO05D005123 1.9e-35 152.1 84 82.1
PGR004G2507 Punica granatum HOM05D004365 ORTHO05D005123 1.9e-35 152.1 84 84.5
Solyc05g053430.3 Solanum lycopersicum HOM05D004365 ORTHO05D005123 1.9e-35 152.1 84 82.1
Sopen05g031930 Solanum pennellii HOM05D004365 ORTHO05D005123 1.9e-35 152.1 84 82.1
PGSC0003DMG400027213 Solanum tuberosum HOM05D004365 ORTHO05D005123 1.9e-35 152.1 84 82.1
PSO210G6722 Papaver somniferum HOM05D004365 ORTHO05D005123 2.5e-35 151.8 84 81.0
Hund11961 Selenicereus undatus HOM05D004365 ORTHO05D005123 2.5e-35 151.8 84 81.0
Oeu016485.1 Olea europaea HOM05D004365 ORTHO05D005123 3.3e-35 151.4 84 81.0
Thecc.04G297700 Theobroma cacao HOM05D004365 ORTHO05D005123 3.3e-35 151.4 84 81.0
SMO174G0170 Selaginella moellendorffii HOM05D004365 ORTHO05D005123 4.3e-35 151.0 83 79.5
CDE02G0371 Ceratophyllum demersum HOM05D004365 ORTHO05D005123 5.6e-35 150.6 84 81.0
Manes.15G005400 Manihot esculenta HOM05D004365 ORTHO05D005123 5.6e-35 150.6 84 81.0
Psat6g078760 Pisum sativum HOM05D004365 ORTHO05D005123 5.6e-35 150.6 84 82.1
CDE09G0896 Ceratophyllum demersum HOM05D004365 ORTHO05D005123 7.3e-35 150.2 84 79.8
DCAR_023347 Daucus carota HOM05D004365 ORTHO05D005123 7.3e-35 150.2 84 81.0
Gohir.A01G034300 Gossypium hirsutum HOM05D004365 ORTHO05D005123 7.3e-35 150.2 84 79.8
Gohir.D01G023535 Gossypium hirsutum HOM05D004365 ORTHO05D005123 7.3e-35 150.2 84 79.8
Gorai.002G030000 Gossypium raimondii HOM05D004365 ORTHO05D005123 7.3e-35 150.2 84 79.8
Nitab4.5_0006365g0010 Nicotiana tabacum HOM05D004365 ORTHO05D005123 7.3e-35 150.2 81 84.0
Prupe.1G122000 Prunus persica HOM05D004365 ORTHO05D005123 7.3e-35 150.2 84 78.6
TPR.G5757 Trifolium pratense HOM05D004365 ORTHO05D005123 7.3e-35 150.2 84 81.0
Ciclev10006256m.g Citrus clementina HOM05D004365 ORTHO05D005123 9.5e-35 149.8 84 78.6
MD13G1156200 Malus domestica HOM05D004365 ORTHO05D005123 9.5e-35 149.8 84 78.6
MD16G1157100 Malus domestica HOM05D004365 ORTHO05D005123 9.5e-35 149.8 84 79.8
SEGI_37796 Sequoiadendron giganteum HOM05D004365 ORTHO05D005123 9.5e-35 149.8 84 79.8
HPP92_002026 Vanilla planifolia HOM05D004365 ORTHO05D005123 9.5e-35 149.8 84 81.0
FAN12G1077 Fragaria x ananassa HOM05D004365 ORTHO05D005123 1.2e-34 149.4 80 83.8
Glyma.15G142700 Glycine max HOM05D004365 ORTHO05D005123 1.2e-34 149.4 84 82.1
TWI73G0828 Tripterygium wilfordii HOM05D004365 ORTHO05D005123 1.2e-34 149.4 84 79.8
SMO364G0316 Selaginella moellendorffii HOM05D004365 ORTHO05D005123 1.6e-34 149.1 84 77.4
Aa31LG8G4020 Aethionema arabicum HOM05D004365 ORTHO05D005123 2.1e-34 148.7 84 76.2
BcaB08g34342 Brassica carinata HOM05D004365 ORTHO05D005123 2.8e-34 148.3 84 76.2
BcaC07g37975 Brassica carinata HOM05D004365 ORTHO05D005123 2.8e-34 148.3 84 76.2
A08p12300 Brassica napus HOM05D004365 ORTHO05D005123 2.8e-34 148.3 84 76.2
BolC8t48354H Brassica oleracea HOM05D004365 ORTHO05D005123 2.8e-34 148.3 84 76.2
BraA08t33228Z Brassica rapa HOM05D004365 ORTHO05D005123 2.8e-34 148.3 84 76.2
Pp3c18_17910 Physcomitrium patens HOM05D004365 ORTHO05D005123 2.8e-34 148.3 84 78.6
Potri.008G106900 Populus trichocarpa HOM05D004365 ORTHO05D005123 2.8e-34 148.3 84 78.6
unitig_22.g6354 Utricularia gibba HOM05D004365 ORTHO05D005123 3.6e-34 147.9 84 81.0
Mapoly0028s0097 Marchantia polymorpha HOM05D004365 ORTHO05D005123 8.0e-34 146.7 84 78.6
BcaB04g18375 Brassica carinata HOM05D004365 ORTHO05D005123 1.1e-33 146.4 80 78.8
BcaC09g50324 Brassica carinata HOM05D004365 ORTHO05D005123 1.1e-33 146.4 84 75.0
BcaNung00211 Brassica carinata HOM05D004365 ORTHO05D005123 1.1e-33 146.4 84 75.0
A01p21300 Brassica napus HOM05D004365 ORTHO05D005123 1.1e-33 146.4 84 75.0
BolC1t02605H Brassica oleracea HOM05D004365 ORTHO05D005123 1.1e-33 146.4 84 75.0
Sabra08G0080800 Salix brachista HOM05D004365 ORTHO05D005123 1.1e-33 146.4 84 77.4
Dinv44302 Davidia involucrata HOM05D004365 ORTHO05D005123 1.4e-33 146.0 84 79.8
Thhalv10021989m.g Eutrema salsugineum HOM05D004365 ORTHO05D005123 1.4e-33 146.0 84 75.0
THA.LOC104820300 Tarenaya hassleriana HOM05D004365 ORTHO05D005123 1.4e-33 146.0 84 75.0
AL3G29960 Arabidopsis lyrata HOM05D004365 ORTHO05D005123 3.1e-33 144.8 84 75.0
arahy.Tifrunner.gnm1.ann1.MX4EIU Arachis hypogaea HOM05D004365 ORTHO05D005123 3.1e-33 144.8 83 77.1
BraA01t02037Z Brassica rapa HOM05D004365 ORTHO05D005123 3.1e-33 144.8 81 76.5
Cpa.g.sc9.86 Carica papaya HOM05D004365 ORTHO05D005123 3.1e-33 144.8 84 75.0
Thhalv10026603m.g Eutrema salsugineum HOM05D004365 ORTHO05D005123 4.0e-33 144.4 84 73.8
AL7G38770 Arabidopsis lyrata HOM05D004365 ORTHO05D005123 5.2e-33 144.1 84 73.8
AT4G16265 Arabidopsis thaliana HOM05D004365 ORTHO05D005123 5.2e-33 144.1 84 73.8
Carub.0003s1673 Capsella rubella HOM05D004365 ORTHO05D005123 5.2e-33 144.1 84 75.0
Carub.0007s2525 Capsella rubella HOM05D004365 ORTHO05D005123 5.2e-33 144.1 84 73.8
Sabra10G0110500 Salix brachista HOM05D004365 ORTHO05D005123 5.2e-33 144.1 84 77.4
Sp7g14780 Schrenkiella parvula HOM05D004365 ORTHO05D005123 5.2e-33 144.1 86 72.1
SpUn0413_0020 Schrenkiella parvula HOM05D004365 ORTHO05D005123 5.2e-33 144.1 84 73.8
Atru.chr4.3028 Acer truncatum HOM05D004365 ORTHO05D005123 6.8e-33 143.7 79 79.7
AT3G16980 Arabidopsis thaliana HOM05D004365 ORTHO05D005123 1.2e-32 142.9 84 73.8
CARHR092230 Cardamine hirsuta HOM05D004365 ORTHO05D005123 2.6e-32 141.7 84 75.0
CARHR222650 Cardamine hirsuta HOM05D004365 ORTHO05D005123 2.6e-32 141.7 84 72.6
Lalb_Chr08g0234431 Lupinus albus HOM05D004365 ORTHO05D005123 3.4e-32 141.4 84 78.6
Os12g0560400 Oryza sativa ssp. japonica HOM05D004365 ORTHO05D005123 5.8e-32 140.6 84 75.0
TWI09G0163 Tripterygium wilfordii HOM05D004365 ORTHO05D005123 7.5e-32 140.2 84 75.0
SalBow2G2782 Salvia bowleyana HOM05D004365 ORTHO05D005123 9.8e-32 139.8 73 89.0
Zm00001eb088460 Zea mays HOM05D004365 ORTHO05D005123 2.2e-31 138.7 84 71.4
Zm00001eb138580 Zea mays HOM05D004365 ORTHO05D005123 2.9e-31 138.3 83 72.3
DCAR_027008 Daucus carota HOM05D004365 ORTHO05D005123 6.4e-31 137.1 73 84.9
Zm00001eb086380 Zea mays HOM05D004365 ORTHO05D005123 2.4e-30 135.2 80 73.8
Glyma.07G241200 Glycine max HOM05D004365 ORTHO05D005123 3.2e-30 134.8 84 70.2
EL10Ac3g05464 Beta vulgaris HOM05D004365 ORTHO05D005123 7.0e-30 133.7 70 85.7
Phvul.003G112600 Phaseolus vulgaris HOM05D004365 ORTHO05D005123 2.1e-29 132.1 84 70.2
Os03g0102200 Oryza sativa ssp. japonica HOM05D004365 ORTHO05D005123 2.7e-29 131.7 84 70.2
Zm00001eb230190 Zea mays HOM05D004365 ORTHO05D005123 2.7e-29 131.7 83 71.1
A09p28560 Brassica napus HOM05D004365 ORTHO05D005123 7.8e-29 130.2 84 66.7
BraA09t38417Z Brassica rapa HOM05D004365 ORTHO05D005123 7.8e-29 130.2 84 66.7
Lj4g0028172 Lotus japonicus HOM05D004365 ORTHO05D005123 1.0e-28 129.8 84 69.0
Manes.03G202800 Manihot esculenta HOM05D004365 ORTHO05D005123 5.1e-28 127.5 84 69.0
VMungo1215G2752 Vigna mungo HOM05D004365 ORTHO05D005123 8.6e-28 126.7 84 67.9
Sabra10G0110300 Salix brachista HOM05D004365 ORTHO05D005123 1.1e-27 126.3 73 78.1
HPP92_005120 Vanilla planifolia HOM05D004365 ORTHO05D005123 2.5e-27 125.2 83 63.9
BcaC04g21057 Brassica carinata HOM05D004365 ORTHO05D005123 3.3e-27 124.8 84 63.1
C09p36150 Brassica napus HOM05D004365 ORTHO05D005123 4.3e-27 124.4 84 63.1
BolC9t56454H Brassica oleracea HOM05D004365 ORTHO05D005123 4.3e-27 124.4 84 63.1
Potri.010G142500 Populus trichocarpa HOM05D004365 ORTHO05D005123 4.3e-27 124.4 84 70.2
TWI53G1753 Tripterygium wilfordii HOM05D004365 ORTHO05D005123 4.0e-25 117.9 83 61.4
Dinv15193 Davidia involucrata HOM05D004365 ORTHO05D005123 2.0e-24 115.5 67 82.1
TWI53G0542 Tripterygium wilfordii HOM05D004365 ORTHO05D005123 7.5e-24 113.6 83 60.2
Mapoly0087s0071 Marchantia polymorpha HOM05D004365 ORTHO05D005123 1.3e-23 112.8 84 59.5
Os07g0615800 Oryza sativa ssp. japonica HOM05D004365 ORTHO05D005123 4.1e-22 107.8 84 51.2
arahy.Tifrunner.gnm1.ann1.2XVX11 Arachis hypogaea HOM05D004365 ORTHO05D005123 2.7e-21 105.1 83 61.4
Zm00001eb270680 Zea mays HOM05D004365 ORTHO05D005123 1.0e-20 103.2 63 74.6
VMungo1309G0143 Vigna mungo HOM05D004365 ORTHO05D005123 9.5e-19 96.7 57 80.7
COL.COLO4_34649 Corchorus olitorius HOM05D001765 ORTHO05D005123 1.2e-18 96.3 57 78.9
Hma1.2p1_0096F.1_g047650 Hydrangea macrophylla HOM05D004365 ORTHO05D005123 3.6e-18 94.7 56 76.8
ATR0665G356 Amborella trichopoda HOM05D004365 ORTHO05D005123 1.1e-17 93.2 57 77.2
SHI00177 Sapria himalayana HOM05D004365 ORTHO05D005123 2.4e-17 92.0 71 59.2
TPR.G10905 Trifolium pratense HOM05D004365 ORTHO05D005123 1.7e-15 85.9 57 70.2
Zm00001eb137030 Zea mays HOM05D004365 ORTHO05D005123 2.2e-15 85.5 54 72.2
MCO01G087 Micromonas commoda HOM05D004365 ORTHO05D005123 6.4e-15 84.0 77 50.6
Hma1.2p1_0234F.1_g098400 Hydrangea macrophylla HOM05D001088 ORTHO05D005123 1.7e-12 75.9 53 67.9
Zm00001eb327460 Zea mays HOM05D004365 ORTHO05D005123 3.6e-10 68.2 73 45.2
Cre12.g505750 Chlamydomonas reinhardtii HOM05D004365 ORTHO05D005123 1.2e-08 63.2 73 43.8
Os11g0676650 Oryza sativa ssp. japonica HOM05D004365 ORTHO05D005123 3.4e-08 61.6 37 75.7


User provided reference genes

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