Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.G03259 Eucalyptus grandis HOM05D004944 ORTHO05D005989 0.0e+00 1279.6 670 100.0
Atru.chr11.2502 Acer truncatum HOM05D004944 ORTHO05D005989 3.5e-238 828.6 669 62.8
Ciclev10030882m.g Citrus clementina HOM05D004944 ORTHO05D005989 1.7e-232 809.7 667 60.9
QL04p013327 Quercus lobata HOM05D004944 ORTHO05D005989 9.3e-231 803.9 678 61.8
Dinv32057 Davidia involucrata HOM05D004944 ORTHO05D005989 3.5e-230 802.0 669 61.1
Haze_03113 Corylus avellana HOM05D004944 ORTHO05D005989 2.0e-225 786.2 698 58.6
TWI15G1108 Tripterygium wilfordii HOM05D004944 ORTHO05D005989 2.6e-225 785.8 666 60.4
Hma1.2p1_0184F.1_g081120 Hydrangea macrophylla HOM05D004944 ORTHO05D005989 7.7e-225 784.3 670 59.9
GSVIVG01000850001 Vitis vinifera HOM05D004944 ORTHO05D005989 2.2e-224 782.7 677 60.3
Potri.003G202300 Populus trichocarpa HOM05D004944 ORTHO05D005989 2.9e-224 782.3 663 60.8
CiPaw.13G010200 Carya illinoinensis HOM05D004944 ORTHO05D005989 1.1e-223 780.4 669 61.4
Migut.N01817 Erythranthe guttata HOM05D004944 ORTHO05D005989 1.2e-222 776.9 689 60.4
Actinidia06272 Actinidia chinensis HOM05D004944 ORTHO05D005989 3.6e-222 775.4 664 60.8
MD02G1296200 Malus domestica HOM05D004944 ORTHO05D005989 3.9e-221 771.9 676 59.2
Medtr3g022850 Medicago truncatula HOM05D004944 ORTHO05D005989 1.7e-219 766.5 673 59.3
MELO3C012446.2 Cucumis melo HOM05D004944 ORTHO05D005989 9.1e-218 760.8 671 57.2
Duzib128G1953 Durio zibethinus HOM05D004944 ORTHO05D005989 2.0e-217 759.6 674 58.2
VMungo1080G1012 Vigna mungo HOM05D004944 ORTHO05D005989 3.4e-217 758.8 672 58.8
Glyma.11G150100 Glycine max HOM05D004944 ORTHO05D005989 5.9e-217 758.1 673 58.7
Lj3g0016020 Lotus japonicus HOM05D004944 ORTHO05D005989 2.9e-216 755.7 670 58.5
Sabra03G0149500 Salix brachista HOM05D004944 ORTHO05D005989 8.5e-216 754.2 705 56.0
Gorai.013G015500 Gossypium raimondii HOM05D004944 ORTHO05D005989 7.2e-215 751.1 661 58.4
Cfa010847 Carpinus fangiana HOM05D004944 ORTHO05D005989 2.1e-214 749.6 664 58.3
CANSAT80G2771 Cannabis sativa HOM05D004944 ORTHO05D005989 2.7e-214 749.2 669 57.8
PGR031G0610 Punica granatum HOM05D004944 ORTHO05D005989 7.9e-214 747.7 664 61.1
Thecc.10G005400 Theobroma cacao HOM05D004944 ORTHO05D005989 2.3e-213 746.1 676 57.5
Sed0005559 Sechium edule HOM05D004944 ORTHO05D005989 8.8e-213 744.2 671 57.4
Gohir.D13G014300 Gossypium hirsutum HOM05D004944 ORTHO05D005989 2.0e-212 743.0 661 57.8
TAR636G1724 Trochodendron aralioides HOM05D004944 ORTHO05D005989 2.6e-212 742.7 677 57.6
arahy.Tifrunner.gnm1.ann1.L5CKR4 Arachis hypogaea HOM05D004944 ORTHO05D005989 5.3e-210 734.9 664 56.8
SGA_v2.0_scaffold5G02935 Striga asiatica HOM05D004944 ORTHO05D005989 5.3e-210 734.9 680 56.3
RcHm_v2.0_Chr1g0319541 Rosa chinensis HOM05D004944 ORTHO05D005989 1.5e-209 733.4 678 57.2
Prupe.2G028500 Prunus persica HOM05D004944 ORTHO05D005989 2.6e-209 732.6 666 58.0
arahy.Tifrunner.gnm1.ann1.YV81B1 Arachis hypogaea HOM05D004944 ORTHO05D005989 3.5e-209 732.3 684 55.4
FAN06G2455 Fragaria x ananassa HOM05D004944 ORTHO05D005989 2.9e-208 729.2 672 56.8
THA.LOC104819120 Tarenaya hassleriana HOM05D004944 ORTHO05D005989 1.1e-207 727.2 671 57.4
Cc02_g29470 Coffea canephora HOM05D004944 ORTHO05D005989 2.5e-207 726.1 691 54.7
FvH4_7g02220 Fragaria vesca HOM05D004944 ORTHO05D005989 4.2e-207 725.3 672 56.7
FAN03G3505 Fragaria x ananassa HOM05D004944 ORTHO05D005989 1.8e-205 719.9 693 55.8
FAN01G0470 Fragaria x ananassa HOM05D004944 ORTHO05D005989 1.2e-201 707.2 724 52.6
Lalb_Chr04g0263921 Lupinus albus HOM05D004944 ORTHO05D005989 1.2e-201 707.2 603 60.5
Sopen01g030310 Solanum pennellii HOM05D004944 ORTHO05D005989 1.9e-199 699.9 691 53.5
CAN.G410.46 Capsicum annuum HOM05D004944 ORTHO05D005989 3.2e-199 699.1 701 53.4
HanXRQChr05g0145061 Helianthus annuus HOM05D004944 ORTHO05D005989 1.2e-198 697.2 665 55.2
TPR.G18800 Trifolium pratense HOM05D004944 ORTHO05D005989 1.6e-198 696.8 673 54.5
SalBow2G1212 Salvia bowleyana HOM05D004944 ORTHO05D005989 5.7e-196 688.3 737 51.7
AT4G30870 Arabidopsis thaliana HOM05D004944 ORTHO05D005989 6.3e-195 684.9 667 54.3
AL7G21230 Arabidopsis lyrata HOM05D004944 ORTHO05D005989 1.1e-194 684.1 669 54.1
ClCG05G020810 Citrullus lanatus HOM05D004944 ORTHO05D005989 1.4e-194 683.7 702 51.9
Thhalv10024629m.g Eutrema salsugineum HOM05D004944 ORTHO05D005989 1.8e-194 683.3 668 54.5
A09p26720 Brassica napus HOM05D004944 ORTHO05D005989 2.7e-193 679.5 665 55.0
BcaC04g21249 Brassica carinata HOM05D004944 ORTHO05D005989 3.5e-193 679.1 666 55.4
C09p33850 Brassica napus HOM05D004944 ORTHO05D005989 3.5e-193 679.1 666 55.4
BolC9t56223H Brassica oleracea HOM05D004944 ORTHO05D005989 3.5e-193 679.1 666 55.4
BraA09t38244Z Brassica rapa HOM05D004944 ORTHO05D005989 3.5e-193 679.1 665 55.0
Carub.0007s0968 Capsella rubella HOM05D004944 ORTHO05D005989 5.9e-193 678.3 675 53.6
Rhsim07G0062200 Rhododendron simsii HOM05D004944 ORTHO05D005989 1.0e-192 677.6 833 47.7
BcaB01g01761 Brassica carinata HOM05D004944 ORTHO05D005989 1.3e-192 677.2 663 54.8
COL.COLO4_25841 Corchorus olitorius HOM05D004944 ORTHO05D005989 3.2e-191 672.5 646 55.1
Cfa010848 Carpinus fangiana HOM05D004944 ORTHO05D005989 4.2e-191 672.2 608 57.1
Lsat_1_v5_gn_9_47141 Lactuca sativa HOM05D004944 ORTHO05D005989 2.7e-190 669.5 654 54.7
Sp6g04870 Schrenkiella parvula HOM05D004944 ORTHO05D005989 4.7e-190 668.7 666 53.8
Cpa.g.sc197.13 Carica papaya HOM05D004944 ORTHO05D005989 2.3e-189 666.4 665 54.0
CARHR238770 Cardamine hirsuta HOM05D004944 ORTHO05D005989 7.5e-188 661.4 670 53.4
Aa31LG2G19510 Aethionema arabicum HOM05D004944 ORTHO05D005989 2.4e-186 656.4 677 53.8
Nn7g36468 Nelumbo nucifera HOM05D004944 ORTHO05D005989 8.0e-182 641.3 668 53.3
Aqoxy1G00293 Aquilegia oxysepala HOM05D004944 ORTHO05D005989 7.5e-180 634.8 669 51.6
Nitab4.5_0006307g0060 Nicotiana tabacum HOM05D004944 ORTHO05D005989 7.5e-180 634.8 616 54.7
ECA232G0518 Erigeron canadensis HOM05D004944 ORTHO05D005989 7.0e-178 628.2 591 56.0
AUR62026814 Chenopodium quinoa HOM05D004944 ORTHO05D005989 3.9e-176 622.5 669 50.2
DCAR_009210 Daucus carota HOM05D004944 ORTHO05D005989 2.8e-174 616.3 669 50.8
Nitab4.5_0000316g0180 Nicotiana tabacum HOM05D004944 ORTHO05D005989 1.5e-167 594.0 582 55.0
MBI17_g24522_MAGBIO Magnolia biondii HOM05D004944 ORTHO05D005989 4.0e-165 585.9 603 53.4
Hund15708 Selenicereus undatus HOM05D004944 ORTHO05D005989 2.9e-163 579.7 669 50.7
PSO782G0837 Papaver somniferum HOM05D004944 ORTHO05D005989 1.4e-162 577.4 666 48.2
Phvul.005G033000 Phaseolus vulgaris HOM05D004944 ORTHO05D005989 2.4e-162 576.6 671 48.7
MD07G1077800 Malus domestica HOM05D004944 ORTHO05D005989 3.2e-162 576.2 591 54.7
Manes.04G164000 Manihot esculenta HOM05D004944 ORTHO05D005989 2.3e-160 570.1 519 57.6
Carub.0007s3598 Capsella rubella HOM05D004944 ORTHO05D005989 1.9e-159 567.0 659 49.6
PSO339G0509 Papaver somniferum HOM05D004944 ORTHO05D005989 3.3e-159 566.2 663 49.2
PSO384G2132 Papaver somniferum HOM05D004944 ORTHO05D005989 1.2e-158 564.3 662 47.3
Thhalv10024809m.g Eutrema salsugineum HOM05D004944 ORTHO05D005989 3.4e-156 556.2 662 47.9
HPP92_001459 Vanilla planifolia HOM05D004944 ORTHO05D005989 7.6e-156 555.1 663 47.4
EL10Ac2g02867 Beta vulgaris HOM05D004944 ORTHO05D005989 1.6e-153 547.4 670 48.5
PSO135G0630 Papaver somniferum HOM05D004944 ORTHO05D005989 2.7e-153 546.6 670 46.6
CDE01G0132 Ceratophyllum demersum HOM05D004944 ORTHO05D005989 2.3e-152 543.5 636 48.6
AUR62037239 Chenopodium quinoa HOM05D004944 ORTHO05D005989 4.0e-149 532.7 669 46.5
RcHm_v2.0_Chr3g0488831 Rosa chinensis HOM05D004944 ORTHO05D005989 1.0e-144 518.1 582 50.5
SEGI_11905 Sequoiadendron giganteum HOM05D004944 ORTHO05D005989 9.6e-143 511.5 687 44.4
CsaV3_5G036480 Cucumis sativus L. HOM05D004944 ORTHO05D005989 1.4e-141 507.7 494 53.0
Gohir.A13G013200 Gossypium hirsutum HOM05D004944 ORTHO05D005989 4.4e-140 502.7 493 53.5
Prupe.7G020900 Prunus persica HOM05D004944 ORTHO05D005989 3.2e-138 496.5 595 49.1
Solyc01g068340.3 Solanum lycopersicum HOM05D004944 ORTHO05D005989 5.6e-127 459.1 521 48.0
Pp3c16_12330 Physcomitrium patens HOM05D004944 ORTHO05D005989 1.5e-124 451.1 671 40.8
SMO337G0105 Selaginella moellendorffii HOM05D004944 ORTHO05D005989 9.6e-119 431.8 677 39.7
AT5G39770 Arabidopsis thaliana HOM05D004944 ORTHO05D005989 1.8e-117 427.6 648 42.3
Mapoly0005s0161 Marchantia polymorpha HOM05D004944 ORTHO05D005989 2.7e-113 413.7 685 37.5
Psat5g213680 Pisum sativum HOM05D004944 ORTHO05D005989 1.4e-109 401.4 462 48.1
AagrBONN_evm.TU.Sc2ySwM_228.3522 Anthoceros agrestis HOM05D004944 ORTHO05D005989 6.5e-107 392.5 670 35.5
Os01g0948100 Oryza sativa ssp. japonica HOM05D004944 ORTHO05D005989 1.8e-104 384.4 552 41.8
unitig_744.g24021 Utricularia gibba HOM05D004944 ORTHO05D005989 6.9e-101 372.5 766 34.5
Sc10g0004230 Simmondsia chinensis HOM05D004944 ORTHO05D005989 5.0e-91 339.7 458 44.3
MBI17_g33308_MAGBIO Magnolia biondii HOM05D004944 ORTHO05D005989 1.9e-90 337.8 222 74.8
Sc10g0004240 Simmondsia chinensis HOM05D004944 ORTHO05D005989 9.4e-90 335.5 222 73.4
Zm00001eb141330 Zea mays HOM05D004944 ORTHO05D005989 4.8e-86 323.2 518 40.7
vmacro13722 Vaccinium macrocarpon HOM05D004944 ORTHO05D005989 7.2e-82 309.3 445 42.5
Peaxi162Scf00309g00015 Petunia axillaris HOM05D004944 ORTHO05D005989 3.0e-80 303.9 547 37.3
Zm00001eb141350 Zea mays HOM05D004944 ORTHO05D005989 1.5e-79 301.6 277 57.8
FAN10G4268 Fragaria x ananassa HOM05D004944 ORTHO05D005989 1.7e-75 288.1 269 57.2
CBR_g44528 Chara braunii HOM05D004944 ORTHO05D005989 1.5e-74 285.0 913 27.3
Ca_04546_v3 Cicer arietinum L. HOM05D004944 ORTHO05D005989 1.3e-70 271.9 352 44.6
Solyc01g068350.3 Solanum lycopersicum HOM05D004944 ORTHO05D005989 2.2e-62 244.6 171 70.2
Lj9A645G78 Lonicera japonica HOM05D004944 ORTHO05D005989 1.6e-60 238.4 310 47.4
ATR0721G036 Amborella trichopoda HOM05D004944 ORTHO05D005989 7.8e-60 236.1 167 68.9
Peaxi162Scf00309g00016 Petunia axillaris HOM05D004944 ORTHO05D005989 6.2e-57 226.5 164 69.5
vmacro13724 Vaccinium macrocarpon HOM05D004944 ORTHO05D005989 5.4e-53 213.4 135 77.8
CSS0031841 Camellia sinensis var. sinensis HOM05D004944 ORTHO05D005989 1.2e-52 212.2 173 61.3
CSS0047173 Camellia sinensis var. sinensis HOM05D004944 ORTHO05D005989 6.0e-52 209.9 146 70.5
Lj9C645T11 Lonicera japonica HOM05D004944 ORTHO05D005989 5.6e-50 203.4 166 61.4
AUR62002442 Chenopodium quinoa HOM05D004944 ORTHO05D005989 6.2e-49 199.9 171 57.9
Prupe.2G032400 Prunus persica HOM05D004944 ORTHO05D005989 3.2e-45 187.6 175 57.7
ATR0721G017 Amborella trichopoda HOM05D004944 ORTHO05D005989 2.1e-44 184.9 361 35.5
BcaNung04417 Brassica carinata HOM05D000343 ORTHO05D003187 4.7e-41 173.7 134 61.2
Sp5g22360 Schrenkiella parvula HOM05D004944 ORTHO05D005989 4.0e-40 170.6 170 52.9
FAN01G1245 Fragaria x ananassa HOM05D004944 ORTHO05D005989 5.2e-40 170.2 151 59.6
MCO01G407 Micromonas commoda HOM05D004944 ORTHO05D005989 1.7e-38 165.2 681 27.6
HPP92_001442 Vanilla planifolia HOM05D004944 ORTHO05D005989 3.2e-37 161.0 143 58.0
CSS0009317 Camellia sinensis var. sinensis HOM05D004944 ORTHO05D005989 3.9e-35 154.1 146 54.8
vmacro13723 Vaccinium macrocarpon HOM05D004944 ORTHO05D005989 1.2e-33 149.1 105 65.7
SHI03969 Sapria himalayana HOM05D004944 ORTHO05D005989 2.0e-31 141.7 163 46.0
PRCOL_00004679 Prasinoderma coloniale HOM05D004944 ORTHO05D005989 2.7e-28 131.3 241 34.9
Lj9A645G77 Lonicera japonica HOM05D004944 ORTHO05D005989 6.6e-27 126.7 113 52.2
Oeu006103.1 Olea europaea HOM05D004944 ORTHO05D005989 4.0e-24 117.5 144 45.1
Haze_26725 Corylus avellana HOM05D004944 ORTHO05D005989 2.0e-23 115.2 240 31.2
Prupe.2G099800 Prunus persica HOM05D004944 ORTHO05D005989 1.3e-22 112.5 282 33.7
Cre12.g555050 Chlamydomonas reinhardtii HOM05D004944 ORTHO05D005989 2.3e-19 101.7 170 37.1
CSS0024385 Camellia sinensis var. sinensis HOM05D004944 ORTHO05D005989 3.3e-18 97.8 91 54.9
Lj9A645G79 Lonicera japonica HOM05D004944 ORTHO05D005989 5.6e-18 97.1 55 80.0
RcHm_v2.0_Chr4g0391951 Rosa chinensis HOM05D004944 ORTHO05D005989 2.1e-17 95.1 103 47.6
SHI03976 Sapria himalayana HOM05D004944 ORTHO05D005989 9.0e-16 89.7 55 70.9
Peaxi162Scf00309g00011 Petunia axillaris HOM05D004944 ORTHO05D005989 5.8e-15 87.0 53 77.4
Psat5g213600 Pisum sativum HOM05D004944 ORTHO05D005989 9.9e-15 86.3 150 39.3
SHI03974 Sapria himalayana HOM05D004944 ORTHO05D005989 9.9e-15 86.3 160 39.4
RcHm_v2.0_Chr2g0114761 Rosa chinensis HOM05D004944 ORTHO05D005989 1.2e-07 62.8 76 43.4
RcHm_v2.0_Chr5g0078731 Rosa chinensis HOM05D004944 ORTHO05D005989 1.2e-07 62.8 76 43.4
SHI03965 Sapria himalayana HOM05D004944 ORTHO05D005989 1.5e-07 62.4 76 43.4


User provided reference genes

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