Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.G02777 Eucalyptus grandis HOM05D000283 ORTHO05D005391 0.0e+00 1831.6 1000 100.0
Thecc.10G063000 Theobroma cacao HOM05D000283 ORTHO05D005391 0.0e+00 1131.7 1013 61.0
PGR142G1216 Punica granatum HOM05D000283 ORTHO05D005391 0.0e+00 1095.9 1022 61.6
Duzib106G1632 Durio zibethinus HOM05D000283 ORTHO05D005391 0.0e+00 1093.2 1015 58.9
Atru.chr12.592 Acer truncatum HOM05D000283 ORTHO05D005391 0.0e+00 1088.6 1017 58.9
Duzib128G1699 Durio zibethinus HOM05D000283 ORTHO05D005391 0.0e+00 1076.6 1015 58.5
Cfa001559 Carpinus fangiana HOM05D000283 ORTHO05D005391 3.0e-310 1068.5 1075 57.4
Haze_16972 Corylus avellana HOM05D000283 ORTHO05D005391 1.5e-309 1066.2 1072 57.6
Prupe.2G224600 Prunus persica HOM05D000283 ORTHO05D005391 1.1e-307 1060.1 1088 55.9
QL08p057534 Quercus lobata HOM05D000283 ORTHO05D005391 2.0e-306 1055.8 1122 56.4
RcHm_v2.0_Chr1g0365011 Rosa chinensis HOM05D000283 ORTHO05D005391 2.7e-306 1055.4 1021 59.4
Gorai.011G242800 Gossypium raimondii HOM05D000283 ORTHO05D005391 3.5e-306 1055.0 1017 58.2
Gohir.D10G217200 Gossypium hirsutum HOM05D000283 ORTHO05D005391 5.9e-306 1054.3 1017 58.1
Gohir.A10G208900 Gossypium hirsutum HOM05D000283 ORTHO05D005391 2.9e-305 1052.0 1017 58.1
COL.COLO4_05804 Corchorus olitorius HOM05D000283 ORTHO05D005391 1.5e-304 1049.7 1050 57.6
Cpa.g.sc1.303 Carica papaya HOM05D000283 ORTHO05D005391 9.5e-304 1047.0 1013 57.5
CiPaw.02G178600 Carya illinoinensis HOM05D000283 ORTHO05D005391 1.5e-301 1039.6 1067 55.9
FAN06G1635 Fragaria x ananassa HOM05D000283 ORTHO05D005391 5.7e-301 1037.7 1034 58.1
FvH4_7g20770 Fragaria vesca HOM05D000283 ORTHO05D005391 2.2e-300 1035.8 1034 58.0
TWI15G0630 Tripterygium wilfordii HOM05D000283 ORTHO05D005391 1.1e-299 1033.5 1057 55.8
GSVIVG01032627001 Vitis vinifera HOM05D000283 ORTHO05D005391 4.3e-296 1021.5 953 59.8
MD01G1117300 Malus domestica HOM05D000283 ORTHO05D005391 4.7e-295 1018.1 1083 54.7
Ciclev10030610m.g Citrus clementina HOM05D000283 ORTHO05D005391 8.0e-295 1017.3 1012 57.4
TAR633G1628 Trochodendron aralioides HOM05D000283 ORTHO05D005391 1.4e-294 1016.5 1026 56.0
MD07G1184700 Malus domestica HOM05D000283 ORTHO05D005391 1.8e-294 1016.1 1077 53.7
Glyma.20G242100 Glycine max HOM05D000283 ORTHO05D005391 2.2e-292 1009.2 1013 56.9
TWI38G2098 Tripterygium wilfordii HOM05D000283 ORTHO05D005391 2.9e-292 1008.8 1077 54.8
VMungo0720G2546 Vigna mungo HOM05D000283 ORTHO05D005391 3.7e-292 1008.4 1013 56.5
CSS0009141 Camellia sinensis var. sinensis HOM05D000283 ORTHO05D005391 1.4e-291 1006.5 1054 56.5
Potri.008G047700 Populus trichocarpa HOM05D000283 ORTHO05D005391 1.2e-290 1003.4 1049 56.0
Manes.07G106300 Manihot esculenta HOM05D000283 ORTHO05D005391 5.9e-290 1001.1 1050 55.5
Glyma.10G292300 Glycine max HOM05D000283 ORTHO05D005391 2.3e-289 999.2 1017 55.9
Hma1.2p1_0207F.1_g087980 Hydrangea macrophylla HOM05D000283 ORTHO05D005391 8.6e-289 997.3 1099 52.1
CANSAT56G0145 Cannabis sativa HOM05D000283 ORTHO05D005391 3.4e-285 985.3 1046 54.8
Manes.10G039400 Manihot esculenta HOM05D000283 ORTHO05D005391 3.4e-285 985.3 1020 56.0
arahy.Tifrunner.gnm1.ann1.M4B7ES Arachis hypogaea HOM05D000283 ORTHO05D005391 5.8e-285 984.6 1020 56.5
FAN06G4940 Fragaria x ananassa HOM05D000283 ORTHO05D005391 7.5e-285 984.2 1031 56.5
FAN10G3387 Fragaria x ananassa HOM05D000283 ORTHO05D005391 1.7e-284 983.0 1029 54.4
MELO3C023808.2 Cucumis melo HOM05D000283 ORTHO05D005391 3.2e-283 978.8 1014 54.3
Nn2g10554 Nelumbo nucifera HOM05D000283 ORTHO05D005391 3.2e-283 978.8 1024 54.1
CsaV3_5G006520 Cucumis sativus L. HOM05D000283 ORTHO05D005391 1.2e-282 976.9 1016 53.9
arahy.Tifrunner.gnm1.ann1.79HMAA Arachis hypogaea HOM05D000283 ORTHO05D005391 1.6e-282 976.5 1020 56.1
TPR.G10417 Trifolium pratense HOM05D000283 ORTHO05D005391 7.3e-280 967.6 1013 54.4
Sabra08G0033800 Salix brachista HOM05D000283 ORTHO05D005391 6.2e-279 964.5 1088 52.7
Lj5g0022773 Lotus japonicus HOM05D000283 ORTHO05D005391 1.4e-278 963.4 1012 54.3
ClCG02G013670 Citrullus lanatus HOM05D000283 ORTHO05D005391 4.4e-277 958.4 1040 53.6
Sed0023338 Sechium edule HOM05D000283 ORTHO05D005391 4.3e-272 941.8 1052 52.1
TAR636G1569 Trochodendron aralioides HOM05D000283 ORTHO05D005391 5.6e-272 941.4 1006 53.0
Cc02_g08650 Coffea canephora HOM05D000283 ORTHO05D005391 1.1e-270 937.2 1015 54.5
Ca_10211_v3 Cicer arietinum L. HOM05D000283 ORTHO05D005391 8.9e-270 934.1 1012 55.0
Lalb_Chr21g0307161 Lupinus albus HOM05D000283 ORTHO05D005391 7.6e-269 931.0 1024 54.8
Sabra10G0165400 Salix brachista HOM05D000283 ORTHO05D005391 2.4e-267 926.0 1076 51.7
Lj8C92G16 Lonicera japonica HOM05D000283 ORTHO05D005391 4.1e-267 925.2 1063 52.1
Sed0010822 Sechium edule HOM05D000283 ORTHO05D005391 6.0e-266 921.4 1010 52.4
Dinv31389 Davidia involucrata HOM05D000283 ORTHO05D005391 5.6e-264 914.8 906 58.2
Aqoxy5G01311 Aquilegia oxysepala HOM05D000283 ORTHO05D005391 1.3e-257 893.6 1078 48.6
Potri.010G213700 Populus trichocarpa HOM05D000283 ORTHO05D005391 3.0e-257 892.5 778 63.4
Medtr3g073080 Medicago truncatula HOM05D000283 ORTHO05D005391 3.9e-257 892.1 1019 52.8
THA.LOC104809997 Tarenaya hassleriana HOM05D000283 ORTHO05D005391 1.5e-256 890.2 1027 51.8
Ah.16g107830 Amaranthus hybridus HOM05D000283 ORTHO05D005391 9.6e-256 887.5 793 60.8
AUR62042665 Chenopodium quinoa HOM05D000283 ORTHO05D005391 1.2e-253 880.6 1008 51.2
THA.LOC104824248 Tarenaya hassleriana HOM05D000283 ORTHO05D005391 1.3e-252 877.1 1021 52.1
AUR62025540 Chenopodium quinoa HOM05D000283 ORTHO05D005391 3.8e-252 875.5 1009 51.6
Sopen05g033370 Solanum pennellii HOM05D000283 ORTHO05D005391 1.4e-251 873.6 1011 51.7
ECA232G0450 Erigeron canadensis HOM05D000283 ORTHO05D005391 6.2e-247 858.2 1036 50.2
Oeu050639.2 Olea europaea HOM05D000283 ORTHO05D005391 1.2e-245 854.0 1002 53.8
Migut.F01533 Erythranthe guttata HOM05D000283 ORTHO05D005391 2.2e-244 849.7 916 53.1
Nitab4.5_0010706g0030 Nicotiana tabacum HOM05D000283 ORTHO05D005391 2.9e-244 849.4 1066 49.3
MBI05_g22074_MAGBIO Magnolia biondii HOM05D000283 ORTHO05D005391 4.9e-244 848.6 993 52.5
ATR0681G328 Amborella trichopoda HOM05D000283 ORTHO05D005391 9.3e-243 844.3 1026 51.0
Thhalv10016180m.g Eutrema salsugineum HOM05D000283 ORTHO05D005391 1.6e-242 843.6 1022 50.6
Sp4g21650 Schrenkiella parvula HOM05D000283 ORTHO05D005391 2.5e-240 836.3 1019 51.5
SpUn0018_0020 Schrenkiella parvula HOM05D000283 ORTHO05D005391 2.5e-240 836.3 1019 51.5
Nitab4.5_0000914g0100 Nicotiana tabacum HOM05D000283 ORTHO05D005391 4.3e-240 835.5 1029 49.4
Phvul.007G008100 Phaseolus vulgaris HOM05D000283 ORTHO05D005391 9.6e-240 834.3 871 57.1
EL10Ac2g03504 Beta vulgaris HOM05D000283 ORTHO05D005391 1.6e-239 833.6 796 58.5
HanXRQChr15g0496771 Helianthus annuus HOM05D000283 ORTHO05D005391 1.8e-238 830.1 1045 49.9
Solyc05g054910.3 Solanum lycopersicum HOM05D000283 ORTHO05D005391 1.8e-238 830.1 1013 50.1
Aa31LG5G20290 Aethionema arabicum HOM05D000283 ORTHO05D005391 2.4e-238 829.7 1055 49.5
Peaxi162Scf00015g02711 Petunia axillaris HOM05D000283 ORTHO05D005391 6.9e-238 828.2 992 51.4
AT2G39340 Arabidopsis thaliana HOM05D000283 ORTHO05D005391 1.7e-236 823.5 1020 49.3
PSO339G6458 Papaver somniferum HOM05D000283 ORTHO05D005391 1.7e-236 823.5 1158 44.3
CARHR134130 Cardamine hirsuta HOM05D000283 ORTHO05D005391 3.7e-231 805.8 1019 47.7
CiPaw.01G279800 Carya illinoinensis HOM05D000283 ORTHO05D005391 1.5e-229 800.4 593 70.3
AL4G36680 Arabidopsis lyrata HOM05D000283 ORTHO05D005391 4.2e-227 792.3 1018 48.2
Psat6g239040 Pisum sativum HOM05D000283 ORTHO05D005391 7.2e-227 791.6 708 60.3
BcaC02g12050 Brassica carinata HOM05D000283 ORTHO05D005391 1.8e-225 786.9 1036 47.7
C04p08450 Brassica napus HOM05D000283 ORTHO05D005391 1.8e-225 786.9 1036 47.7
CDE09G1073 Ceratophyllum demersum HOM05D000283 ORTHO05D005391 2.9e-220 769.6 976 47.6
CAN.G1602.11 Capsicum annuum HOM05D000283 ORTHO05D005391 2.5e-219 766.5 795 54.7
SGA_v2.0_scaffold291G47345 Striga asiatica HOM05D000283 ORTHO05D005391 2.7e-218 763.1 1045 50.1
SalBow6G0521 Salvia bowleyana HOM05D000283 ORTHO05D005391 7.9e-218 761.5 1035 47.1
BraA04t18452Z Brassica rapa HOM05D000283 ORTHO05D005391 1.1e-216 757.7 1019 48.6
BolC4t22443H Brassica oleracea HOM05D000283 ORTHO05D005391 1.5e-216 757.3 1027 50.2
PSO384G3825 Papaver somniferum HOM05D000283 ORTHO05D005391 1.5e-216 757.3 720 58.2
A04p30550 Brassica napus HOM05D000283 ORTHO05D005391 1.3e-215 754.2 1019 48.4
Lalb_Chr02g0143871 Lupinus albus HOM05D000283 ORTHO05D005391 4.5e-213 745.7 614 65.0
BcaB02g09134 Brassica carinata HOM05D000283 ORTHO05D005391 5.9e-213 745.3 1051 46.6
Lsat_1_v5_gn_9_66761 Lactuca sativa HOM05D000283 ORTHO05D004861 1.2e-210 737.6 1114 45.9
A05p07060 Brassica napus HOM05D000283 ORTHO05D005391 3.0e-209 733.0 1028 48.6
BraA05t19671Z Brassica rapa HOM05D000283 ORTHO05D005391 3.0e-209 733.0 1028 48.6
BolC4t28220H Brassica oleracea HOM05D000283 ORTHO05D005391 5.2e-209 732.3 1019 46.8
BcaC02g07413 Brassica carinata HOM05D000283 ORTHO05D005391 1.0e-204 718.0 1020 45.3
C04p67220 Brassica napus HOM05D000283 ORTHO05D005391 1.3e-204 717.6 1019 45.3
Sc20g0002350 Simmondsia chinensis HOM05D000283 ORTHO05D005391 1.4e-201 707.6 867 51.1
BcaB06g29078 Brassica carinata HOM05D000283 ORTHO05D005391 2.3e-201 706.8 1017 48.0
unitig_749.g14014 Utricularia gibba HOM05D000283 ORTHO05D005391 5.2e-201 705.7 946 47.8
CDE02G4519 Ceratophyllum demersum HOM05D000283 ORTHO05D005391 2.7e-197 693.3 793 51.3
Carub.0004s2138 Capsella rubella HOM05D000283 ORTHO05D005391 1.3e-196 691.0 688 56.5
Hund22435 Selenicereus undatus HOM05D000283 ORTHO05D005391 3.5e-189 666.4 524 67.4
HPP92_015567 Vanilla planifolia HOM05D000283 ORTHO05D005391 1.6e-178 630.9 795 47.5
Zm00001eb351500 Zea mays HOM05D000283 ORTHO05D005391 8.3e-175 618.6 799 46.6
Os05g0462600 Oryza sativa ssp. japonica HOM05D000283 ORTHO05D005391 2.4e-174 617.1 789 47.8
Zm00001eb289820 Zea mays HOM05D000283 ORTHO05D005391 9.2e-174 615.1 793 45.9
AL5G26090 Arabidopsis lyrata HOM05D000283 ORTHO05D005391 5.8e-168 595.9 958 41.6
MSTRG.311 Avicennia marina HOM05D000283 ORTHO05D005391 7.3e-163 578.9 426 70.7
Mapoly0013s0152 Marchantia polymorpha HOM05D000283 ORTHO05D005391 1.3e-159 568.2 832 43.3
Actinidia03006 Actinidia chinensis HOM05D000283 ORTHO05D005391 6.4e-151 539.3 369 72.9
AagrBONN_evm.TU.Sc2ySwM_117.607 Anthoceros agrestis HOM05D000283 ORTHO05D005391 2.1e-149 534.3 1080 39.6
Actinidia38225 Actinidia chinensis HOM05D000283 ORTHO05D005391 2.7e-149 533.9 371 73.0
Os01g0836400 Oryza sativa ssp. japonica HOM05D000283 ORTHO05D005391 9.6e-147 525.4 936 39.5
Pp3c1_11990 Physcomitrium patens HOM05D000283 ORTHO05D005391 1.6e-141 508.1 953 38.6
Pp3c2_24860 Physcomitrium patens HOM05D000283 ORTHO05D005391 6.4e-127 459.5 1012 35.4
SHI28193 Sapria himalayana HOM05D000283 ORTHO05D005391 3.0e-124 450.7 825 40.2
DCAR_027697 Daucus carota HOM05D000283 ORTHO05D005391 1.3e-116 425.2 347 64.6
SMO143G0323 Selaginella moellendorffii HOM05D000283 ORTHO05D005391 8.7e-116 422.5 356 60.7
CBR_g53551 Chara braunii HOM05D000283 ORTHO05D005391 3.1e-113 414.1 726 40.4
Dinv25941 Davidia involucrata HOM05D000283 ORTHO05D004861 2.5e-94 351.3 493 44.6
Actinidia29199 Actinidia chinensis HOM05D000283 ORTHO05D005391 7.2e-94 349.7 332 59.3
DCAR_005053 Daucus carota HOM05D000283 ORTHO05D005391 4.8e-82 310.5 454 43.2
SEGI_11420 Sequoiadendron giganteum HOM05D000283 ORTHO05D005391 3.5e-80 304.3 374 49.5
PRCOL_00005565 Prasinoderma coloniale HOM05D000283 ORTHO05D005391 2.8e-69 268.1 374 43.6
SMO141G0080 Selaginella moellendorffii HOM05D000283 ORTHO05D005391 5.2e-68 263.8 257 56.0
DCAR_005047 Daucus carota HOM05D000283 ORTHO05D005391 9.8e-67 259.6 553 35.3
MCO13G063 Micromonas commoda HOM05D000283 ORTHO05D005391 9.5e-62 243.0 300 45.3
Cre06.g258100 Chlamydomonas reinhardtii HOM05D000283 ORTHO05D005391 2.0e-51 208.8 342 37.7
HPP92_015519 Vanilla planifolia HOM05D000283 ORTHO05D005391 3.0e-47 194.9 158 60.1
Hund28801 Selenicereus undatus HOM05D000283 ORTHO05D005391 2.5e-46 191.8 536 32.5
Hund28802 Selenicereus undatus HOM05D000283 ORTHO05D005391 2.5e-46 191.8 536 32.5
MBI05_g32639_MAGBIO Magnolia biondii HOM05D000283 ORTHO05D005391 4.3e-46 191.0 156 63.5
Gohir.D07G196232 Gossypium hirsutum HOM05D000283 ORTHO05D005391 1.6e-45 189.1 113 84.1
CSS0032527 Camellia sinensis var. sinensis HOM05D000283 ORTHO05D005391 1.4e-44 186.0 195 55.4
CiPaw.01G279700 Carya illinoinensis HOM05D000283 ORTHO05D005391 1.4e-44 186.0 327 38.8
QL10p060204 Quercus lobata HOM05D000283 ORTHO05D005391 5.2e-44 184.1 136 74.3
TAR381G0169 Trochodendron aralioides HOM05D000283 ORTHO05D005391 1.7e-42 179.1 165 57.0
MBI05_g30758_MAGBIO Magnolia biondii HOM05D000283 ORTHO05D005391 3.7e-42 177.9 131 65.6
Oeu058323.4 Olea europaea HOM05D000283 ORTHO05D005391 1.9e-41 175.6 362 39.0
SEGI_03051 Sequoiadendron giganteum HOM05D000283 ORTHO05D005391 4.1e-41 174.5 155 56.1
PRCOL_00002713 Prasinoderma coloniale HOM05D000283 ORTHO05D005391 8.1e-37 160.2 276 35.9
SHI28196 Sapria himalayana HOM05D000283 ORTHO05D005391 1.8e-36 159.1 136 62.5
TAR381G1264 Trochodendron aralioides HOM05D000283 ORTHO05D005391 5.8e-35 154.1 257 38.5
CAN.G10752.1 Capsicum annuum HOM05D000283 ORTHO05D005391 9.2e-33 146.7 267 43.4
Actinidia29200 Actinidia chinensis HOM05D000283 ORTHO05D019495 9.6e-30 136.7 104 67.3
Psat3g183560 Pisum sativum HOM05D000283 ORTHO05D030474 3.4e-27 128.3 75 82.7
PGR044G1425 Punica granatum HOM05D000283 ORTHO05D005391 4.4e-27 127.9 85 75.3
Psat3g183640 Pisum sativum HOM05D000283 ORTHO05D030474 2.2e-26 125.6 75 81.3
SEGI_11289 Sequoiadendron giganteum HOM05D000283 ORTHO05D005391 2.4e-25 122.1 388 34.5
Medtr1g115940 Medicago truncatula HOM05D000283 ORTHO05D019495 1.7e-18 99.4 159 36.5
HanXRQChr09g0246591 Helianthus annuus HOM05D000283 ORTHO05D005391 1.0e-15 90.1 87 56.3
CSS0012380 Camellia sinensis var. sinensis HOM05D000283 ORTHO05D043332 1.8e-15 89.4 50 84.0
CSS0035555 Camellia sinensis var. sinensis HOM05D000283 ORTHO05D043332 1.5e-14 86.3 50 80.0
BraA03t11440Z Brassica rapa HOM05D000283 ORTHO05D019495 2.5e-14 85.5 83 50.6
PSO339G3701 Papaver somniferum HOM05D000283 ORTHO05D005391 1.3e-13 83.2 463 25.3
Psat6g098640 Pisum sativum HOM05D000283 ORTHO05D005391 1.8e-12 79.3 52 69.2
Psat1g113360 Pisum sativum HOM05D000283 ORTHO05D030474 2.4e-12 79.0 62 59.7
Nn2g12827 Nelumbo nucifera HOM05D000283 ORTHO05D005391 8.4e-10 70.5 87 43.7
A03p22060 Brassica napus HOM05D000283 ORTHO05D019495 7.1e-09 67.4 59 55.9
Lalb_Chr02g0143861 Lupinus albus HOM05D000283 ORTHO05D005391 9.3e-09 67.0 117 41.9
Psat7g108960 Pisum sativum HOM05D000283 ORTHO05D030474 1.6e-08 66.2 49 65.3
BcaB01g03663 Brassica carinata HOM05D033592 ORTHO05D019495 7.9e-08 63.9 110 40.9
Solyc12g035670.3 Solanum lycopersicum HOM05D002494 ORTHO05D002673 2.3e-07 62.4 263 26.2
Sopen12g016080 Solanum pennellii HOM05D002494 ORTHO05D002673 8.7e-07 60.5 263 25.9
CAN.G290.14 Capsicum annuum HOM05D002494 ORTHO05D002673 1.1e-06 60.1 242 26.4
TWI09G0743 Tripterygium wilfordii HOM05D002494 ORTHO05D002673 2.5e-06 58.9 242 26.9
PGR004G0605 Punica granatum HOM05D002494 ORTHO05D002673 4.3e-06 58.2 241 26.1
Sc06g0002980 Simmondsia chinensis HOM05D002494 ORTHO05D002673 4.3e-06 58.2 276 28.6
CDE04G2572 Ceratophyllum demersum HOM05D002494 ORTHO05D002673 7.4e-06 57.4 241 25.3


User provided reference genes

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