Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.G02677 Eucalyptus grandis HOM05D003391 ORTHO05D005563 0.0e+00 1341.6 698 100.0
PGR042G2316 Punica granatum HOM05D003391 ORTHO05D005563 0.0e+00 1191.0 681 90.9
Gohir.D08G181000 Gossypium hirsutum HOM05D003391 ORTHO05D005563 0.0e+00 1167.1 680 89.1
Gorai.004G190000 Gossypium raimondii HOM05D003391 ORTHO05D005563 0.0e+00 1167.1 680 89.1
Gohir.A08G160766 Gossypium hirsutum HOM05D003391 ORTHO05D005563 0.0e+00 1164.4 680 89.0
Cfa018226 Carpinus fangiana HOM05D003391 ORTHO05D005563 0.0e+00 1162.9 677 89.2
MD09G1135000 Malus domestica HOM05D003391 ORTHO05D005563 0.0e+00 1156.7 681 88.5
Thecc.03G235800 Theobroma cacao HOM05D003391 ORTHO05D005563 0.0e+00 1154.4 680 88.1
CiPaw.10G102000 Carya illinoinensis HOM05D003391 ORTHO05D005563 0.0e+00 1152.5 680 88.2
Duzib084G0647 Durio zibethinus HOM05D003391 ORTHO05D005563 0.0e+00 1151.3 680 88.4
QL04p065456 Quercus lobata HOM05D003391 ORTHO05D005563 0.0e+00 1151.3 681 87.7
Prupe.3G191700 Prunus persica HOM05D003391 ORTHO05D005563 0.0e+00 1151.0 681 88.5
CsaV3_4G032190 Cucumis sativus L. HOM05D003391 ORTHO05D005563 0.0e+00 1150.6 681 87.8
CANSAT64G0651 Cannabis sativa HOM05D003391 ORTHO05D005563 0.0e+00 1150.2 681 87.8
Phvul.006G134000 Phaseolus vulgaris HOM05D003391 ORTHO05D005563 0.0e+00 1150.2 681 88.0
VMungo0540G0836 Vigna mungo HOM05D003391 ORTHO05D005563 0.0e+00 1150.2 681 88.1
GSVIVG01016094001 Vitis vinifera HOM05D003391 ORTHO05D005563 0.0e+00 1149.4 681 87.2
Glyma.09G018300 Glycine max HOM05D003391 ORTHO05D005563 0.0e+00 1147.5 681 87.4
MELO3C026391.2 Cucumis melo HOM05D003391 ORTHO05D005563 0.0e+00 1147.1 681 87.5
TPR.G10474 Trifolium pratense HOM05D003391 ORTHO05D005563 0.0e+00 1145.2 681 87.2
Lalb_Chr18g0057621 Lupinus albus HOM05D003391 ORTHO05D005563 0.0e+00 1144.4 681 86.9
Atru.chr13.1465 Acer truncatum HOM05D003391 ORTHO05D005563 0.0e+00 1144.0 694 85.9
Medtr2g028270 Medicago truncatula HOM05D003391 ORTHO05D005563 0.0e+00 1143.3 681 86.6
RcHm_v2.0_Chr2g0154761 Rosa chinensis HOM05D003391 ORTHO05D005563 0.0e+00 1143.3 681 87.4
arahy.Tifrunner.gnm1.ann1.635YAA Arachis hypogaea HOM05D003391 ORTHO05D005563 0.0e+00 1141.3 681 86.9
Lj6g0008612 Lotus japonicus HOM05D003391 ORTHO05D005563 0.0e+00 1140.6 681 86.9
Dinv10208 Davidia involucrata HOM05D003391 ORTHO05D005563 0.0e+00 1140.2 681 86.6
Glyma.15G124200 Glycine max HOM05D003391 ORTHO05D005563 0.0e+00 1139.8 681 86.5
TWI74G0249 Tripterygium wilfordii HOM05D003391 ORTHO05D005563 0.0e+00 1139.8 681 86.2
MD17G1124000 Malus domestica HOM05D003391 ORTHO05D005563 0.0e+00 1137.1 681 87.1
Sed0012933 Sechium edule HOM05D003391 ORTHO05D005563 0.0e+00 1136.3 680 86.9
THA.LOC104809239 Tarenaya hassleriana HOM05D003391 ORTHO05D005563 0.0e+00 1136.3 681 86.3
Cpa.g.sc122.39 Carica papaya HOM05D003391 ORTHO05D005563 0.0e+00 1134.4 678 87.9
FAN02G4219 Fragaria x ananassa HOM05D003391 ORTHO05D005563 0.0e+00 1133.2 671 88.1
TWI77G0821 Tripterygium wilfordii HOM05D003391 ORTHO05D005563 0.0e+00 1132.5 681 85.2
FvH4_6g40130 Fragaria vesca HOM05D003391 ORTHO05D005563 0.0e+00 1130.5 680 87.1
Manes.01G037700 Manihot esculenta HOM05D003391 ORTHO05D005563 0.0e+00 1129.8 680 85.9
Eucgr.L01917 Eucalyptus grandis HOM05D003391 ORTHO05D005563 0.0e+00 1127.1 595 98.2
FAN09G1714 Fragaria x ananassa HOM05D003391 ORTHO05D005563 0.0e+00 1125.9 682 86.8
FAN05G0705 Fragaria x ananassa HOM05D003391 ORTHO05D005563 0.0e+00 1125.2 682 87.0
TAR626G0891 Trochodendron aralioides HOM05D003391 ORTHO05D005563 0.0e+00 1124.4 681 85.5
Aa31LG10G3790 Aethionema arabicum HOM05D003391 ORTHO05D005563 0.0e+00 1122.8 681 85.6
Potri.016G023000 Populus trichocarpa HOM05D003391 ORTHO05D005563 0.0e+00 1121.3 680 85.6
Hma1.2p1_0583F.1_g183000 Hydrangea macrophylla HOM05D003391 ORTHO05D005563 0.0e+00 1112.8 665 86.5
EL10Ac9g21140 Beta vulgaris HOM05D003391 ORTHO05D005563 0.0e+00 1112.4 681 83.7
Nn7g37683 Nelumbo nucifera HOM05D003391 ORTHO05D005563 0.0e+00 1111.3 682 84.0
Solyc04g049490.3 Solanum lycopersicum HOM05D003391 ORTHO05D005563 0.0e+00 1105.5 680 82.9
Sopen04g019460 Solanum pennellii HOM05D003391 ORTHO05D005563 0.0e+00 1105.5 680 82.9
AUR62023891 Chenopodium quinoa HOM05D003391 ORTHO05D005563 0.0e+00 1104.0 677 83.8
vmacro13793 Vaccinium macrocarpon HOM05D003391 ORTHO05D005563 0.0e+00 1101.7 680 83.7
PSO675G3205 Papaver somniferum HOM05D003391 ORTHO05D005563 0.0e+00 1100.9 671 84.1
Aqoxy3G00251 Aquilegia oxysepala HOM05D003391 ORTHO05D005563 0.0e+00 1098.2 671 84.4
Cc06_g14340 Coffea canephora HOM05D003391 ORTHO05D005563 0.0e+00 1098.2 681 83.0
PSO541G1880 Papaver somniferum HOM05D003391 ORTHO05D005563 0.0e+00 1098.2 668 84.1
CAN.G466.12 Capsicum annuum HOM05D003391 ORTHO05D005563 0.0e+00 1097.8 681 82.5
FAN14G1902 Fragaria x ananassa HOM05D003391 ORTHO05D005563 0.0e+00 1097.8 721 81.7
Duzib068G0467 Durio zibethinus HOM05D003391 ORTHO05D005563 0.0e+00 1097.0 680 85.0
CSS0020230 Camellia sinensis var. sinensis HOM05D003391 ORTHO05D005563 0.0e+00 1094.3 689 82.9
CAN.G998.14 Capsicum annuum HOM05D003391 ORTHO05D005563 0.0e+00 1092.4 681 81.8
MSTRG.9187 Avicennia marina HOM05D003391 ORTHO05D005563 0.0e+00 1090.5 688 81.7
Sc24g0003350 Simmondsia chinensis HOM05D003391 ORTHO05D005563 0.0e+00 1090.5 681 82.4
Migut.F02007 Erythranthe guttata HOM05D003391 ORTHO05D005563 0.0e+00 1088.6 679 82.2
BcaB02g11154 Brassica carinata HOM05D003391 ORTHO05D005563 0.0e+00 1088.2 681 82.8
A05p20100 Brassica napus HOM05D003391 ORTHO05D005563 0.0e+00 1087.8 681 82.8
C05p33590 Brassica napus HOM05D003391 ORTHO05D005563 0.0e+00 1087.8 681 82.8
MSTRG.27454 Avicennia marina HOM05D003391 ORTHO05D005563 0.0e+00 1086.2 679 82.0
SalBow4G0334 Salvia bowleyana HOM05D003391 ORTHO05D005563 0.0e+00 1085.5 664 83.9
Migut.F01784 Erythranthe guttata HOM05D003391 ORTHO05D005563 0.0e+00 1083.6 691 80.3
AL1G58160 Arabidopsis lyrata HOM05D003391 ORTHO05D005563 0.0e+00 1081.2 687 82.0
Ca_11369_v3 Cicer arietinum L. HOM05D003391 ORTHO05D005563 0.0e+00 1081.2 681 83.6
Ca_30786_v3 Cicer arietinum L. HOM05D003391 ORTHO05D005563 0.0e+00 1081.2 681 83.6
CARHR040530 Cardamine hirsuta HOM05D003391 ORTHO05D005563 0.0e+00 1080.5 710 80.1
AT1G50500 Arabidopsis thaliana HOM05D003391 ORTHO05D005563 0.0e+00 1080.1 687 82.0
BcaC05g27411 Brassica carinata HOM05D003391 ORTHO05D005563 0.0e+00 1079.7 681 82.4
ECA236G2623 Erigeron canadensis HOM05D003391 ORTHO05D005563 0.0e+00 1079.7 681 81.2
HanXRQChr04g0122221 Helianthus annuus HOM05D003391 ORTHO05D005563 0.0e+00 1076.6 674 81.8
CSS0023421 Camellia sinensis var. sinensis HOM05D003391 ORTHO05D005563 0.0e+00 1075.8 692 81.6
Carub.0001s3957 Capsella rubella HOM05D003391 ORTHO05D005563 0.0e+00 1075.8 682 82.1
CDE02G0628 Ceratophyllum demersum HOM05D003391 ORTHO05D005563 4.8e-312 1074.7 683 81.3
Peaxi162Scf00072g00087 Petunia axillaris HOM05D003391 ORTHO05D005563 4.8e-312 1074.7 655 83.8
Sp1g37350 Schrenkiella parvula HOM05D003391 ORTHO05D005563 2.4e-311 1071.6 681 81.6
arahy.Tifrunner.gnm1.ann1.QTWQ8J Arachis hypogaea HOM05D003391 ORTHO05D005563 1.4e-309 1065.8 633 87.0
COL.COLO4_06714 Corchorus olitorius HOM05D003391 ORTHO05D005563 1.4e-309 1065.8 667 84.1
ECA240G2134 Erigeron canadensis HOM05D003391 ORTHO05D005563 1.5e-308 1062.4 677 78.9
MBI18_g28220_MAGBIO Magnolia biondii HOM05D003391 ORTHO05D005563 1.5e-308 1062.4 659 83.9
BcaC01g01234 Brassica carinata HOM05D003391 ORTHO05D005563 3.4e-308 1061.2 689 80.6
ATR1098G037 Amborella trichopoda HOM05D003391 ORTHO05D005563 3.7e-307 1057.7 676 80.9
Sabra16G0023000 Salix brachista HOM05D003391 ORTHO05D005563 6.4e-307 1057.0 681 81.6
Sabra16G0029200 Salix brachista HOM05D003391 ORTHO05D005563 6.4e-307 1057.0 681 81.6
SGA_v2.0_scaffold62G21434 Striga asiatica HOM05D003391 ORTHO05D005563 1.9e-306 1055.4 773 73.5
Zm00001eb144220 Zea mays HOM05D003391 ORTHO05D005563 2.5e-303 1045.0 683 79.2
AUR62022296 Chenopodium quinoa HOM05D003391 ORTHO05D005563 7.3e-303 1043.5 677 79.9
Thhalv10011301m.g Eutrema salsugineum HOM05D003391 ORTHO05D005563 1.2e-302 1042.7 651 83.1
DCAR_003077 Daucus carota HOM05D003391 ORTHO05D005563 6.6e-296 1020.4 678 80.1
Lsat_1_v5_gn_7_7561 Lactuca sativa HOM05D003391 ORTHO05D005563 2.1e-294 1015.4 678 77.7
Nitab4.5_0007706g0020 Nicotiana tabacum HOM05D003391 ORTHO05D005563 1.7e-291 1005.7 665 78.9
HanXRQChr03g0093781 Helianthus annuus HOM05D003391 ORTHO05D005563 6.0e-289 997.3 685 76.1
ClCG11G016680 Citrullus lanatus HOM05D003391 ORTHO05D005563 2.3e-288 995.3 665 80.3
CDE05G3605 Ceratophyllum demersum HOM05D003391 ORTHO05D005563 3.9e-288 994.6 659 78.9
Haze_17876 Corylus avellana HOM05D003391 ORTHO05D005563 1.4e-282 976.1 694 76.1
Hund02122 Selenicereus undatus HOM05D003391 ORTHO05D005563 1.5e-279 966.1 629 80.0
Oeu033843.4 Olea europaea HOM05D003391 ORTHO05D005563 6.2e-278 960.7 701 73.5
C03p89680 Brassica napus HOM05D003391 ORTHO05D005563 1.9e-274 949.1 707 72.7
Lalb_Chr15g0088521 Lupinus albus HOM05D003391 ORTHO05D005563 1.0e-272 943.3 566 85.2
Atru.chr13.1440 Acer truncatum HOM05D003391 ORTHO05D005563 1.4e-269 932.9 694 74.1
unitig_899.g14436 Utricularia gibba HOM05D003391 ORTHO05D005563 3.0e-264 915.2 670 71.9
Mapoly0030s0152 Marchantia polymorpha HOM05D003391 ORTHO05D005563 7.9e-257 890.6 673 68.1
BolC5t32086H Brassica oleracea HOM05D003391 ORTHO05D005563 3.9e-256 888.3 685 71.5
Nitab4.5_0000575g0140 Nicotiana tabacum HOM05D003391 ORTHO05D005563 3.3e-255 885.2 655 72.5
BraA05t20918Z Brassica rapa HOM05D003391 ORTHO05D005563 4.3e-255 884.8 684 71.3
Ah.01g004390 Amaranthus hybridus HOM05D003391 ORTHO05D005563 1.1e-253 880.2 694 69.7
Lj7A654G26 Lonicera japonica HOM05D003391 ORTHO05D005563 2.9e-251 872.1 560 80.7
SMO196G0220 Selaginella moellendorffii HOM05D003391 ORTHO05D005563 7.2e-250 867.5 683 65.6
Pp3c8_8190 Physcomitrium patens HOM05D003391 ORTHO05D005563 7.9e-249 864.0 692 64.0
Pp3c24_4920 Physcomitrium patens HOM05D003391 ORTHO05D005563 2.2e-246 855.9 669 65.0
Rhsim05G0168000 Rhododendron simsii HOM05D003391 ORTHO05D005563 6.3e-246 854.4 730 67.0
Actinidia37789 Actinidia chinensis HOM05D003391 ORTHO05D005563 5.5e-242 841.3 519 83.6
Psat1g171000 Pisum sativum HOM05D003391 ORTHO05D005563 1.6e-233 813.1 501 82.8
arahy.Tifrunner.gnm1.ann1.MM6MID Arachis hypogaea HOM05D003391 ORTHO05D005563 1.5e-231 806.6 703 65.9
CBR_g35042 Chara braunii HOM05D003391 ORTHO05D005563 5.2e-224 781.6 748 56.8
Oeu030440.3 Olea europaea HOM05D003391 ORTHO05D005563 1.5e-223 780.0 565 72.6
AL1G58810 Arabidopsis lyrata HOM05D003391 ORTHO05D005563 2.0e-223 779.6 710 62.8
BcaB04g17246 Brassica carinata HOM05D003391 ORTHO05D005563 2.9e-211 739.2 640 65.3
Lsat_1_v5_gn_3_133361 Lactuca sativa HOM05D003391 ORTHO05D005563 1.1e-210 737.3 677 61.4
AagrBONN_evm.TU.Sc2ySwM_228.283 Anthoceros agrestis HOM05D003391 ORTHO05D005563 7.5e-207 724.5 592 63.2
AL1G58840 Arabidopsis lyrata HOM05D003391 ORTHO05D005563 2.4e-205 719.5 711 59.9
HPP92_006006 Vanilla planifolia HOM05D003391 ORTHO05D005563 1.6e-204 716.8 545 72.1
Rhsim11G0087500 Rhododendron simsii HOM05D003391 ORTHO05D005563 8.9e-200 701.0 478 77.8
Ciclev10029974m.g Citrus clementina HOM05D003391 ORTHO05D005563 4.6e-196 688.7 452 82.3
BolC3t21285H Brassica oleracea HOM05D003391 ORTHO05D005563 5.6e-194 681.8 447 80.5
PGSC0003DMG401012873 Solanum tuberosum HOM05D003391 ORTHO05D005563 4.0e-176 622.5 380 84.5
Ca_00789_v3 Cicer arietinum L. HOM05D003391 ORTHO05D005563 4.8e-169 599.0 367 83.9
SHI21342 Sapria himalayana HOM05D003391 ORTHO05D005563 2.4e-168 596.7 470 68.1
PRCOL_00003915 Prasinoderma coloniale HOM05D003391 ORTHO05D005563 2.8e-153 546.6 683 45.7
MCO12G450 Micromonas commoda HOM05D003391 ORTHO05D005563 1.9e-125 454.1 711 39.7
PGSC0003DMG402012873 Solanum tuberosum HOM05D003391 ORTHO05D005563 2.0e-119 434.1 274 79.6
AT1G50970 Arabidopsis thaliana HOM05D003391 ORTHO05D005563 4.8e-113 412.9 389 60.2
Psat1g171680 Pisum sativum HOM05D003391 ORTHO05D005563 1.1e-112 411.8 236 91.9
SEGI_14368 Sequoiadendron giganteum HOM05D003391 ORTHO05D005563 1.8e-112 411.0 265 78.9
Ciclev10028552m.g Citrus clementina HOM05D003391 ORTHO05D005563 1.3e-105 388.3 229 85.6
Os01g0906200 Oryza sativa ssp. japonica HOM05D003391 ORTHO05D005563 6.3e-105 386.0 256 75.0
Cre06.g259600 Chlamydomonas reinhardtii HOM05D003391 ORTHO05D005563 1.5e-101 374.8 718 34.1
Cfa021970 Carpinus fangiana HOM05D003391 ORTHO05D125001 1.2e-71 275.4 670 30.7
Lsat_1_v5_gn_6_88940 Lactuca sativa HOM05D003391 ORTHO05D019401 1.6e-68 265.0 182 77.5
SEGI_15776 Sequoiadendron giganteum HOM05D003391 ORTHO05D005563 8.9e-67 259.2 164 76.2
Lsat_1_v5_gn_8_87740 Lactuca sativa HOM05D003391 ORTHO05D019401 2.0e-66 258.1 197 73.6
Atru.chr7.1997 Acer truncatum HOM05D003391 ORTHO05D019401 7.1e-56 223.0 142 85.2
Actinidia03950 Actinidia chinensis HOM05D003391 ORTHO05D005563 2.7e-55 221.1 128 86.7
Lalb_Chr15g0088511 Lupinus albus HOM05D003391 ORTHO05D019401 4.6e-47 193.7 117 88.9
SEGI_01209 Sequoiadendron giganteum HOM05D003391 ORTHO05D005563 2.8e-36 157.9 103 73.8
HPP92_006005 Vanilla planifolia HOM05D003391 ORTHO05D005563 3.7e-36 157.5 123 65.9
SEGI_30207 Sequoiadendron giganteum HOM05D003391 ORTHO05D005563 6.5e-33 146.7 89 73.0
SHI21339 Sapria himalayana HOM05D003391 ORTHO05D005563 8.4e-33 146.4 149 55.7
SEGI_03199 Sequoiadendron giganteum HOM05D003391 ORTHO05D019401 7.1e-32 143.3 92 81.5
RcHm_v2.0_Chr1g0364361 Rosa chinensis HOM05D003391 ORTHO05D005413 3.0e-30 137.9 103 70.9
CARHR183160 Cardamine hirsuta HOM05D003391 ORTHO05D019401 1.5e-29 135.6 128 64.8
Manes.07G058173 Manihot esculenta HOM05D003391 ORTHO05D250310 4.3e-21 107.5 79 74.7
Manes.12G128950 Manihot esculenta HOM05D003391 ORTHO05D249565 4.3e-21 107.5 79 74.7
Manes.13G081678 Manihot esculenta HOM05D003391 ORTHO05D250639 3.7e-20 104.4 79 73.4
Sp1g37750 Schrenkiella parvula HOM05D003391 ORTHO05D372635 4.1e-19 100.9 90 65.6
Dinv04581 Davidia involucrata HOM05D003391 ORTHO05D005563 1.1e-16 92.8 60 80.0
Oeu063006.1 Olea europaea HOM05D001351 ORTHO05D001203 1.4e-16 92.4 70 68.6
Manes.08G058900 Manihot esculenta HOM05D003391 ORTHO05D250822 4.2e-16 90.9 67 74.6
CARHR292060 Cardamine hirsuta HOM05D003391 ORTHO05D019401 6.7e-14 83.6 51 84.3
arahy.Tifrunner.gnm1.ann1.MF7AUF Arachis hypogaea HOM05D003391 ORTHO05D008505 1.7e-12 79.0 47 83.0
CARHR041020 Cardamine hirsuta HOM05D003391 ORTHO05D013251 3.7e-12 77.8 56 69.6
SHI21343 Sapria himalayana HOM05D000002 ORTHO05D000001 4.8e-12 77.4 51 82.4
SEGI_03483 Sequoiadendron giganteum HOM05D003391 ORTHO05D005563 4.8e-12 77.4 50 70.0
ECA246G3223 Erigeron canadensis HOM05D001124 ORTHO05D001004 1.1e-11 76.3 46 84.8
SalBow4G0084 Salvia bowleyana HOM05D000136 ORTHO05D000080 3.8e-09 67.8 48 68.8


User provided reference genes

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