Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.F01242 Eucalyptus grandis HOM05D005043 ORTHO05D006182 3.0e-232 808.1 409 100.0
PGR083G1657 Punica granatum HOM05D005043 ORTHO05D006182 6.9e-136 488.0 369 67.5
GSVIVG01014196001 Vitis vinifera HOM05D005043 ORTHO05D006182 4.5e-127 458.8 349 65.9
TAR636G1993 Trochodendron aralioides HOM05D005043 ORTHO05D006182 1.7e-126 456.8 385 62.1
Prupe.4G164600 Prunus persica HOM05D005043 ORTHO05D006182 3.6e-124 449.1 376 62.0
Oeu031030.1 Olea europaea HOM05D005043 ORTHO05D006182 6.7e-123 444.9 349 65.6
Ciclev10023741m.g Citrus clementina HOM05D005043 ORTHO05D006182 8.8e-123 444.5 381 61.2
Atru.chr2.2132 Acer truncatum HOM05D005043 ORTHO05D006182 2.0e-122 443.4 351 62.7
Cpa.g.sc77.9 Carica papaya HOM05D005043 ORTHO05D006182 2.0e-122 443.4 357 64.7
Dinv18365 Davidia involucrata HOM05D005043 ORTHO05D006182 2.0e-122 443.4 348 64.7
Nn7g37328 Nelumbo nucifera HOM05D005043 ORTHO05D006182 2.0e-122 443.4 417 57.8
MD11G1263900 Malus domestica HOM05D005043 ORTHO05D006182 3.3e-122 442.6 348 64.9
Lj1C829T6 Lonicera japonica HOM05D005043 ORTHO05D006182 4.4e-122 442.2 350 64.0
Cc05_g11070 Coffea canephora HOM05D005043 ORTHO05D006182 2.8e-121 439.5 356 62.6
Hma1.2p1_0290F.1_g114850 Hydrangea macrophylla HOM05D005043 ORTHO05D006182 8.2e-121 438.0 352 63.6
Migut.M00727 Erythranthe guttata HOM05D005043 ORTHO05D006182 2.6e-119 433.0 347 64.6
Gohir.D01G042722 Gossypium hirsutum HOM05D005043 ORTHO05D006182 3.5e-119 432.6 350 61.4
Gorai.002G054600 Gossypium raimondii HOM05D005043 ORTHO05D006182 3.5e-119 432.6 350 61.4
MSTRG.12865 Avicennia marina HOM05D005043 ORTHO05D006182 2.2e-118 429.9 350 62.9
COL.COLO4_17542 Corchorus olitorius HOM05D005043 ORTHO05D006182 2.9e-118 429.5 346 62.7
Rhsim06G0208200 Rhododendron simsii HOM05D005043 ORTHO05D006182 5.0e-118 428.7 358 61.5
CiPaw.11G160200 Carya illinoinensis HOM05D005043 ORTHO05D006182 3.2e-117 426.0 349 63.3
CANSAT35G1445 Cannabis sativa HOM05D005043 ORTHO05D006182 4.2e-117 425.6 350 62.6
Solyc07g062430.3 Solanum lycopersicum HOM05D005043 ORTHO05D006182 4.2e-117 425.6 352 60.5
Sopen07g030670 Solanum pennellii HOM05D005043 ORTHO05D006182 4.2e-117 425.6 352 60.8
Manes.15G094900 Manihot esculenta HOM05D005043 ORTHO05D006182 7.2e-117 424.9 395 58.5
BolC3t17001H Brassica oleracea HOM05D005043 ORTHO05D006182 4.7e-116 422.2 354 63.3
Gohir.A01G054300 Gossypium hirsutum HOM05D005043 ORTHO05D006182 8.0e-116 421.4 350 60.9
Potri.001G390500 Populus trichocarpa HOM05D005043 ORTHO05D006182 1.0e-115 421.0 352 62.5
Sabra16G0255900 Salix brachista HOM05D005043 ORTHO05D006182 1.4e-115 420.6 371 60.1
TWI38G0078 Tripterygium wilfordii HOM05D005043 ORTHO05D006182 1.4e-115 420.6 356 60.7
RcHm_v2.0_Chr5g0030901 Rosa chinensis HOM05D005043 ORTHO05D006182 1.8e-115 420.2 349 61.3
C03p47310 Brassica napus HOM05D005043 ORTHO05D006182 2.3e-115 419.9 354 63.0
AL3G27210 Arabidopsis lyrata HOM05D005043 ORTHO05D006182 8.8e-115 417.9 363 61.4
Duzib213G0837 Durio zibethinus HOM05D005043 ORTHO05D006182 8.8e-115 417.9 347 60.2
PGSC0003DMG400007070 Solanum tuberosum HOM05D005043 ORTHO05D006182 1.1e-114 417.5 359 59.1
MBI06_g29324_MAGBIO Magnolia biondii HOM05D005043 ORTHO05D006182 2.0e-114 416.8 459 51.6
Peaxi162Scf00111g01457 Petunia axillaris HOM05D005043 ORTHO05D006182 2.0e-114 416.8 351 59.5
Thecc.07G117100 Theobroma cacao HOM05D005043 ORTHO05D006182 2.6e-114 416.4 347 61.1
BcaB06g25330 Brassica carinata HOM05D005043 ORTHO05D006182 2.2e-113 413.3 359 61.0
AT3G14890 Arabidopsis thaliana HOM05D005043 ORTHO05D006182 2.8e-113 412.9 363 60.9
A05p34520 Brassica napus HOM05D005043 ORTHO05D006182 2.8e-113 412.9 358 60.9
BraA05t22272Z Brassica rapa HOM05D005043 ORTHO05D006182 2.8e-113 412.9 358 60.9
A03p39040 Brassica napus HOM05D005043 ORTHO05D006182 8.2e-113 411.4 347 61.4
BraA03t13053Z Brassica rapa HOM05D005043 ORTHO05D006182 8.2e-113 411.4 347 61.4
CAN.G375.16 Capsicum annuum HOM05D005043 ORTHO05D006182 1.4e-112 410.6 352 59.7
THA.LOC104822566 Tarenaya hassleriana HOM05D005043 ORTHO05D006182 2.4e-112 409.8 350 61.1
EL10Ac4g08345 Beta vulgaris HOM05D005043 ORTHO05D006182 4.1e-112 409.1 363 61.4
Sp3g13100 Schrenkiella parvula HOM05D005043 ORTHO05D006182 4.1e-112 409.1 358 59.5
BolC5t33915H Brassica oleracea HOM05D005043 ORTHO05D006182 7.0e-112 408.3 353 60.6
Carub.0003s1455 Capsella rubella HOM05D005043 ORTHO05D006182 1.2e-111 407.5 363 60.9
SGA_v2.0_scaffold70G23376 Striga asiatica HOM05D005043 ORTHO05D006182 2.0e-111 406.8 409 55.3
Aa31LG8G2100 Aethionema arabicum HOM05D005043 ORTHO05D006182 2.6e-111 406.4 358 60.1
Phvul.011G162300 Phaseolus vulgaris HOM05D005043 ORTHO05D006182 2.6e-111 406.4 345 59.1
BcaB06g29516 Brassica carinata HOM05D005043 ORTHO05D006182 5.9e-111 405.2 359 60.4
CARHR089830 Cardamine hirsuta HOM05D005043 ORTHO05D006182 5.9e-111 405.2 358 58.4
CDE09G1444 Ceratophyllum demersum HOM05D005043 ORTHO05D006182 1.3e-110 404.1 346 61.0
Haze_09322 Corylus avellana HOM05D005043 ORTHO05D006182 1.3e-110 404.1 376 58.2
Thhalv10020510m.g Eutrema salsugineum HOM05D005043 ORTHO05D006182 1.3e-110 404.1 356 59.3
Sed0006465 Sechium edule HOM05D005043 ORTHO05D006182 3.8e-110 402.5 353 57.5
FAN21G3659 Fragaria x ananassa HOM05D005043 ORTHO05D006182 1.1e-109 401.0 341 60.4
C05p52260 Brassica napus HOM05D005043 ORTHO05D006182 1.5e-109 400.6 360 60.3
CsaV3_4G033100 Cucumis sativus L. HOM05D005043 ORTHO05D006182 1.9e-109 400.2 385 55.1
Ca_26224_v3 Cicer arietinum L. HOM05D005043 ORTHO05D006182 2.5e-109 399.8 352 57.7
FAN11G3478 Fragaria x ananassa HOM05D005043 ORTHO05D006182 3.2e-109 399.4 341 60.1
FAN25G1853 Fragaria x ananassa HOM05D005043 ORTHO05D006182 4.2e-109 399.1 341 60.7
FvH4_3g18270 Fragaria vesca HOM05D005043 ORTHO05D006182 5.5e-109 398.7 341 60.1
Medtr6g466500 Medicago truncatula HOM05D005043 ORTHO05D006182 1.2e-108 397.5 361 57.6
Aqoxy7G03872 Aquilegia oxysepala HOM05D005043 ORTHO05D006182 1.6e-108 397.1 347 59.7
HanXRQChr12g0362951 Helianthus annuus HOM05D005043 ORTHO05D006182 1.6e-108 397.1 349 60.2
HanXRQChr13g0390281 Helianthus annuus HOM05D005043 ORTHO05D006182 1.6e-108 397.1 349 59.9
arahy.Tifrunner.gnm1.ann1.NUK3H0 Arachis hypogaea HOM05D005043 ORTHO05D006182 2.7e-108 396.4 362 58.0
ClCG11G017440 Citrullus lanatus HOM05D005043 ORTHO05D006182 2.7e-108 396.4 389 54.2
Lalb_Chr03g0031161 Lupinus albus HOM05D005043 ORTHO05D006182 3.6e-108 396.0 359 58.8
FAN16G3394 Fragaria x ananassa HOM05D005043 ORTHO05D006182 8.0e-108 394.8 341 59.2
DCAR_017172 Daucus carota HOM05D005043 ORTHO05D006182 1.8e-107 393.7 377 55.4
arahy.Tifrunner.gnm1.ann1.5E18AM Arachis hypogaea HOM05D005043 ORTHO05D006182 2.3e-107 393.3 367 56.9
Glyma.12G157700 Glycine max HOM05D005043 ORTHO05D006182 3.0e-107 392.9 356 56.5
vmacro11941 Vaccinium macrocarpon HOM05D005043 ORTHO05D006182 3.4e-106 389.4 455 48.4
SalBow8G1024 Salvia bowleyana HOM05D005043 ORTHO05D006182 3.7e-105 386.0 342 60.8
AUR62019576 Chenopodium quinoa HOM05D005043 ORTHO05D006182 9.1e-104 381.3 370 56.8
ECA240G3232 Erigeron canadensis HOM05D005043 ORTHO05D006182 1.6e-103 380.6 350 56.6
PSO782G2110 Papaver somniferum HOM05D005043 ORTHO05D006182 4.5e-103 379.0 347 56.2
Lsat_1_v5_gn_9_99860 Lactuca sativa HOM05D005043 ORTHO05D006182 5.9e-103 378.6 351 56.4
PSO384G1010 Papaver somniferum HOM05D005043 ORTHO05D006182 7.2e-101 371.7 373 54.2
PSO478G3490 Papaver somniferum HOM05D005043 ORTHO05D006182 8.0e-100 368.2 348 54.9
TPR.G12585 Trifolium pratense HOM05D005043 ORTHO05D006182 6.3e-97 358.6 326 58.3
VMungo1127G0129 Vigna mungo HOM05D005043 ORTHO05D006182 8.3e-97 358.2 440 45.7
SalBow1G3547 Salvia bowleyana HOM05D005043 ORTHO05D006182 1.9e-93 347.1 342 56.4
vmacro23467 Vaccinium macrocarpon HOM05D005043 ORTHO05D006182 4.7e-92 342.4 417 47.5
Lj3g0009561 Lotus japonicus HOM05D005043 ORTHO05D006182 2.0e-90 337.0 320 54.7
vmacro23385 Vaccinium macrocarpon HOM05D005043 ORTHO05D006182 3.2e-88 329.7 422 45.7
Glyma.06G229100 Glycine max HOM05D005043 ORTHO05D006182 2.7e-87 326.6 230 68.3
Lalb_Chr19g0133801 Lupinus albus HOM05D005043 ORTHO05D006182 3.5e-87 326.2 213 72.3
MELO3C025641.2 Cucumis melo HOM05D005043 ORTHO05D006182 1.7e-86 323.9 352 51.1
unitig_749.g13541 Utricularia gibba HOM05D005043 ORTHO05D006182 6.6e-86 322.0 307 55.7
ATR1131G028 Amborella trichopoda HOM05D005043 ORTHO05D006182 9.5e-85 318.2 313 53.4
arahy.Tifrunner.gnm1.ann1.3VV2Z3 Arachis hypogaea HOM05D005043 ORTHO05D006182 5.0e-78 295.8 209 66.5
Os01g0737300 Oryza sativa ssp. japonica HOM05D005043 ORTHO05D006182 9.8e-74 281.6 306 49.3
HPP92_009836 Vanilla planifolia HOM05D005043 ORTHO05D006182 1.6e-71 274.2 175 72.6
Pp3c6_17140 Physcomitrium patens HOM05D005043 ORTHO05D006182 1.0e-70 271.6 386 42.0
Nitab4.5_0006953g0040 Nicotiana tabacum HOM05D005043 ORTHO05D006182 1.6e-68 264.2 350 43.4
arahy.Tifrunner.gnm1.ann1.5IY6XE Arachis hypogaea HOM05D005043 ORTHO05D006182 3.6e-68 263.1 173 71.1
Sc16g0007590 Simmondsia chinensis HOM05D005043 ORTHO05D006182 4.4e-66 256.1 336 49.1
CBR_g66772 Chara braunii HOM05D005043 ORTHO05D006182 6.4e-65 252.3 417 39.6
QL08p026231 Quercus lobata HOM05D005043 ORTHO05D006182 4.6e-63 246.1 146 79.5
Mapoly0056s0069 Marchantia polymorpha HOM05D005043 ORTHO05D006182 6.0e-63 245.7 347 42.1
SMO137G0206 Selaginella moellendorffii HOM05D005043 ORTHO05D006182 3.0e-62 243.4 191 61.8
AUR62042780 Chenopodium quinoa HOM05D005043 ORTHO05D006182 2.4e-59 233.8 147 73.5
AagrBONN_evm.TU.Sc2ySwM_228.1872 Anthoceros agrestis HOM05D005043 ORTHO05D006182 4.9e-57 226.1 311 43.4
Thecc.07G116500 Theobroma cacao HOM05D005043 ORTHO05D006182 1.6e-52 211.1 138 71.0
BcaNung07105 Brassica carinata HOM05D005043 ORTHO05D006182 2.1e-47 194.1 207 54.1
Ah.04g164250 Amaranthus hybridus HOM05D005043 ORTHO05D006182 3.3e-45 186.8 136 69.9
QL08p026221 Quercus lobata HOM05D005043 ORTHO05D006182 4.8e-44 183.0 204 51.0
Nitab4.5_0003565g0060 Nicotiana tabacum HOM05D005043 ORTHO05D006182 1.5e-42 177.9 350 34.0
AUR62042782 Chenopodium quinoa HOM05D005043 ORTHO05D006182 2.7e-39 167.2 238 46.2
Hma1.2p1_0113F.1_g055130 Hydrangea macrophylla HOM05D005043 ORTHO05D006182 3.9e-30 136.7 93 69.9
MCO04G542 Micromonas commoda HOM05D005043 ORTHO05D006182 4.3e-29 133.3 191 39.8
Cre09.g388726 Chlamydomonas reinhardtii HOM05D005043 ORTHO05D006182 1.1e-27 128.6 187 39.6
Psat3g077040 Pisum sativum HOM05D005043 ORTHO05D006182 1.8e-27 127.9 144 50.0
CSS0038261 Camellia sinensis var. sinensis HOM05D005043 ORTHO05D006182 3.1e-27 127.1 134 54.5
MSTRG.9725 Avicennia marina HOM05D005043 ORTHO05D000110 5.7e-21 106.3 89 61.8
Hund10554 Selenicereus undatus HOM05D005043 ORTHO05D006182 5.7e-21 106.3 129 48.1
CSS0039124 Camellia sinensis var. sinensis HOM05D005043 ORTHO05D006182 3.7e-20 103.6 70 70.0
PSO782G5034 Papaver somniferum HOM05D005043 ORTHO05D006182 8.2e-20 102.4 105 49.5
SHI37131 Sapria himalayana HOM05D005043 ORTHO05D006182 9.0e-19 99.0 65 69.2
PRCOL_00001017 Prasinoderma coloniale HOM05D005043 ORTHO05D006182 1.5e-18 98.2 170 35.9
Medtr6g052000 Medicago truncatula HOM05D005043 ORTHO05D006182 2.2e-17 94.4 105 50.5
PSO478G1721 Papaver somniferum HOM05D005043 ORTHO05D006182 3.8e-17 93.6 127 47.2
RcHm_v2.0_Chr5g0030891 Rosa chinensis HOM05D005043 ORTHO05D006182 7.2e-16 89.4 116 45.7
Psat3g076960 Pisum sativum HOM05D005043 ORTHO05D006182 1.4e-14 85.1 90 52.2
Psat3g076840 Pisum sativum HOM05D005043 ORTHO05D006182 8.8e-14 82.4 105 46.7
SEGI_37980 Sequoiadendron giganteum HOM05D005043 ORTHO05D006182 8.8e-14 82.4 99 43.4
Zm00001eb153930 Zea mays HOM05D005043 ORTHO05D006182 2.0e-13 81.3 192 30.7
arahy.Tifrunner.gnm1.ann1.SEI0XU Arachis hypogaea HOM05D000735 ORTHO05D000838 2.5e-13 80.9 76 52.6
ECA240G0297 Erigeron canadensis HOM05D005043 ORTHO05D006182 2.5e-13 80.9 89 43.8
Psat3g076920 Pisum sativum HOM05D005043 ORTHO05D006182 1.3e-12 78.6 90 50.0
Medtr6g052005 Medicago truncatula HOM05D005043 ORTHO05D006182 3.7e-12 77.0 46 73.9
SMO175G0006 Selaginella moellendorffii HOM05D017119 ORTHO05D006182 1.4e-11 75.1 79 45.6
SEGI_01303 Sequoiadendron giganteum HOM05D005043 ORTHO05D006182 1.8e-11 74.7 55 63.6
FvH4_4g05840 Fragaria vesca HOM05D005043 ORTHO05D006182 2.4e-11 74.3 160 35.6
CSS0012296 Camellia sinensis var. sinensis HOM05D005043 ORTHO05D006182 1.2e-10 72.0 55 61.8
TPR.G17654 Trifolium pratense HOM05D005043 ORTHO05D006182 1.2e-10 72.0 53 62.3
Actinidia09808 Actinidia chinensis HOM05D005043 ORTHO05D006182 2.5e-08 64.3 191 33.0
Medtr6g464930 Medicago truncatula HOM05D005043 ORTHO05D006182 4.2e-08 63.5 49 61.2
Os01g0737401 Oryza sativa ssp. japonica HOM05D005043 ORTHO05D006182 4.7e-07 60.1 33 81.8
MD05G1201000 Malus domestica HOM05D001448 ORTHO05D005781 6.1e-07 59.7 81 39.5
MD10G1187800 Malus domestica HOM05D001448 ORTHO05D005781 1.0e-06 58.9 81 38.3
Nn1g02698 Nelumbo nucifera HOM05D001448 ORTHO05D005781 1.8e-06 58.2 76 40.8
HPP92_025971 Vanilla planifolia HOM05D001448 ORTHO05D005781 2.3e-06 57.8 75 41.3
Prupe.8G227600 Prunus persica HOM05D001448 ORTHO05D005781 3.9e-06 57.0 80 37.5
Dinv22438 Davidia involucrata HOM05D001448 ORTHO05D005781 5.1e-06 56.6 75 40.0
Os07g0413700 Oryza sativa ssp. japonica HOM05D001448 ORTHO05D005781 5.1e-06 56.6 84 36.9
PGR044G0051 Punica granatum HOM05D001448 ORTHO05D005781 5.1e-06 56.6 76 42.1
DCAR_018467 Daucus carota HOM05D001448 ORTHO05D005781 6.7e-06 56.2 75 40.0
Actinidia09565 Actinidia chinensis HOM05D001448 ORTHO05D005781 8.8e-06 55.8 76 39.5
CSS0017569 Camellia sinensis var. sinensis HOM05D001448 ORTHO05D005781 8.8e-06 55.8 75 40.0
CSS0028913 Camellia sinensis var. sinensis HOM05D001448 ORTHO05D005781 8.8e-06 55.8 75 40.0
FAN24G2205 Fragaria x ananassa HOM05D001448 ORTHO05D005781 8.8e-06 55.8 81 38.3
FAN27G1373 Fragaria x ananassa HOM05D001448 ORTHO05D005781 8.8e-06 55.8 81 38.3
MBI18_g10480_MAGBIO Magnolia biondii HOM05D001448 ORTHO05D005781 8.8e-06 55.8 75 40.0
SGA_v2.0_scaffold138G35260 Striga asiatica HOM05D001448 ORTHO05D005781 8.8e-06 55.8 76 39.5


User provided reference genes

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