Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.F01066 Eucalyptus grandis HOM05D004364 ORTHO05D006299 0.0e+00 1762.7 884 100.0
PGR083G1074 Punica granatum HOM05D004364 ORTHO05D006299 0.0e+00 1385.2 812 82.4
MD11G1234900 Malus domestica HOM05D004364 ORTHO05D006299 0.0e+00 1377.8 815 82.5
Prupe.4G192200 Prunus persica HOM05D004364 ORTHO05D006299 0.0e+00 1369.4 816 82.4
GSVIVG01014465001 Vitis vinifera HOM05D004364 ORTHO05D006299 0.0e+00 1367.4 812 82.8
Cfa020489 Carpinus fangiana HOM05D004364 ORTHO05D006299 0.0e+00 1359.7 815 81.8
MD03G1217200 Malus domestica HOM05D004364 ORTHO05D006299 0.0e+00 1355.9 815 81.3
Atru.chr2.2938 Acer truncatum HOM05D004364 ORTHO05D006299 0.0e+00 1353.6 815 81.1
FvH4_3g21160 Fragaria vesca HOM05D004364 ORTHO05D006299 0.0e+00 1350.5 816 80.8
TWI39G0400 Tripterygium wilfordii HOM05D004364 ORTHO05D006299 0.0e+00 1349.7 816 80.8
CANSAT11G0334 Cannabis sativa HOM05D004364 ORTHO05D006299 0.0e+00 1346.3 816 80.4
CiPaw.11G178500 Carya illinoinensis HOM05D004364 ORTHO05D006299 0.0e+00 1345.9 811 81.1
Potri.011G125800 Populus trichocarpa HOM05D004364 ORTHO05D006299 0.0e+00 1344.3 811 80.4
Ciclev10007478m.g Citrus clementina HOM05D004364 ORTHO05D006299 0.0e+00 1342.8 814 80.1
FAN11G0387 Fragaria x ananassa HOM05D004364 ORTHO05D006299 0.0e+00 1341.3 820 80.1
RcHm_v2.0_Chr5g0036241 Rosa chinensis HOM05D004364 ORTHO05D006299 0.0e+00 1340.5 816 80.0
Manes.03G117700 Manihot esculenta HOM05D004364 ORTHO05D006299 0.0e+00 1339.7 811 80.4
FAN16G3737 Fragaria x ananassa HOM05D004364 ORTHO05D006299 0.0e+00 1338.6 821 80.3
Potri.001G408800 Populus trichocarpa HOM05D004364 ORTHO05D006299 0.0e+00 1337.0 812 80.4
TAR626G1658 Trochodendron aralioides HOM05D004364 ORTHO05D006299 0.0e+00 1332.8 815 80.2
Phvul.011G156100 Phaseolus vulgaris HOM05D004364 ORTHO05D006299 0.0e+00 1331.6 808 79.7
arahy.Tifrunner.gnm1.ann1.19RIMK Arachis hypogaea HOM05D004364 ORTHO05D006299 0.0e+00 1330.9 812 79.4
FAN25G2975 Fragaria x ananassa HOM05D004364 ORTHO05D006299 0.0e+00 1330.9 820 79.9
Gohir.A08G020600 Gossypium hirsutum HOM05D004364 ORTHO05D006299 0.0e+00 1329.7 814 81.1
Duzib170G0088 Durio zibethinus HOM05D004364 ORTHO05D006299 0.0e+00 1327.8 813 80.1
Gorai.004G028800 Gossypium raimondii HOM05D004364 ORTHO05D006299 0.0e+00 1327.0 814 81.0
Gohir.D08G031200 Gossypium hirsutum HOM05D004364 ORTHO05D006299 0.0e+00 1326.2 814 80.8
Glyma.12G146600 Glycine max HOM05D004364 ORTHO05D006299 0.0e+00 1325.8 809 79.6
CsaV3_3G044300 Cucumis sativus L. HOM05D004364 ORTHO05D006299 0.0e+00 1325.5 815 79.9
MELO3C018182.2 Cucumis melo HOM05D004364 ORTHO05D006299 0.0e+00 1324.7 815 80.1
arahy.Tifrunner.gnm1.ann1.B7TU6S Arachis hypogaea HOM05D004364 ORTHO05D006299 0.0e+00 1323.5 809 79.7
Ca_01795_v3 Cicer arietinum L. HOM05D004364 ORTHO05D006299 0.0e+00 1322.0 809 79.4
Lj3g0027191 Lotus japonicus HOM05D004364 ORTHO05D006299 0.0e+00 1320.8 815 78.7
TPR.G32881 Trifolium pratense HOM05D004364 ORTHO05D006299 0.0e+00 1320.8 811 79.5
Nn1g06827 Nelumbo nucifera HOM05D004364 ORTHO05D006299 0.0e+00 1320.1 808 80.2
Psat5g247520 Pisum sativum HOM05D004364 ORTHO05D006299 0.0e+00 1319.7 813 78.7
PSO210G4872 Papaver somniferum HOM05D004364 ORTHO05D006299 0.0e+00 1316.6 816 79.7
Sabra11G0111700 Salix brachista HOM05D004364 ORTHO05D006299 0.0e+00 1316.6 822 78.6
Cpa.g.sc12.20 Carica papaya HOM05D004364 ORTHO05D006299 0.0e+00 1315.4 820 78.9
Medtr2g081180 Medicago truncatula HOM05D004364 ORTHO05D006299 0.0e+00 1315.4 808 79.2
PSO832G2674 Papaver somniferum HOM05D004364 ORTHO05D006299 0.0e+00 1315.4 816 79.9
Lalb_Chr02g0159341 Lupinus albus HOM05D004364 ORTHO05D006299 0.0e+00 1313.5 813 79.2
Lalb_Chr06g0175311 Lupinus albus HOM05D004364 ORTHO05D006299 0.0e+00 1311.2 813 79.1
Sed0018829 Sechium edule HOM05D004364 ORTHO05D006299 0.0e+00 1310.8 816 79.2
Glyma.06G255000 Glycine max HOM05D004364 ORTHO05D006299 0.0e+00 1306.6 809 78.0
Thecc.07G069000 Theobroma cacao HOM05D004364 ORTHO05D006299 0.0e+00 1305.4 813 79.2
CSS0001646 Camellia sinensis var. sinensis HOM05D004364 ORTHO05D006299 0.0e+00 1300.8 812 78.8
Sc16g0006700 Simmondsia chinensis HOM05D004364 ORTHO05D006299 0.0e+00 1298.1 813 77.4
Hma1.2p1_0015F.1_g010280 Hydrangea macrophylla HOM05D004364 ORTHO05D006299 0.0e+00 1297.7 812 79.4
ClCG11G018570 Citrullus lanatus HOM05D004364 ORTHO05D006299 0.0e+00 1290.8 896 72.8
Aqoxy1G03944 Aquilegia oxysepala HOM05D004364 ORTHO05D006299 0.0e+00 1287.7 810 78.8
THA.LOC104816919 Tarenaya hassleriana HOM05D004364 ORTHO05D006299 0.0e+00 1284.6 823 76.1
HanXRQChr03g0076071 Helianthus annuus HOM05D004364 ORTHO05D006299 0.0e+00 1283.5 808 78.2
FAN21G1304 Fragaria x ananassa HOM05D004364 ORTHO05D006299 0.0e+00 1283.1 816 77.7
Haze_09550 Corylus avellana HOM05D004364 ORTHO05D006299 0.0e+00 1275.8 832 76.8
HanXRQChr13g0407291 Helianthus annuus HOM05D004364 ORTHO05D006299 0.0e+00 1271.5 812 76.8
AT3G20630 Arabidopsis thaliana HOM05D004364 ORTHO05D006299 0.0e+00 1266.5 808 76.5
Solyc07g063650.4 Solanum lycopersicum HOM05D004364 ORTHO05D006299 0.0e+00 1265.4 809 76.4
Sp3g18670 Schrenkiella parvula HOM05D004364 ORTHO05D006299 0.0e+00 1264.6 809 76.6
Sopen07g031830 Solanum pennellii HOM05D004364 ORTHO05D006299 0.0e+00 1261.9 809 76.1
Thhalv10020069m.g Eutrema salsugineum HOM05D004364 ORTHO05D006299 0.0e+00 1261.5 810 77.0
AL3G34510 Arabidopsis lyrata HOM05D004364 ORTHO05D006299 0.0e+00 1260.4 808 76.4
BcaB04g19118 Brassica carinata HOM05D004364 ORTHO05D006299 0.0e+00 1259.6 810 76.0
AUR62041167 Chenopodium quinoa HOM05D004364 ORTHO05D006299 0.0e+00 1259.2 818 75.9
A03p41850 Brassica napus HOM05D004364 ORTHO05D006299 0.0e+00 1258.4 810 76.0
BcaC01g03545 Brassica carinata HOM05D004364 ORTHO05D006299 0.0e+00 1257.7 810 75.9
C03p51230 Brassica napus HOM05D004364 ORTHO05D006299 0.0e+00 1257.7 810 75.9
ECA240G1374 Erigeron canadensis HOM05D004364 ORTHO05D006299 0.0e+00 1255.4 802 76.7
BraA03t13338Z Brassica rapa HOM05D004364 ORTHO05D006299 0.0e+00 1254.6 811 76.0
BolC3t17413H Brassica oleracea HOM05D004364 ORTHO05D006299 0.0e+00 1253.8 811 75.8
CARHR096430 Cardamine hirsuta HOM05D004364 ORTHO05D006299 0.0e+00 1253.4 809 75.6
Lj8C162G4 Lonicera japonica HOM05D004364 ORTHO05D006299 0.0e+00 1253.4 788 78.6
AUR62029293 Chenopodium quinoa HOM05D004364 ORTHO05D006299 0.0e+00 1251.1 810 76.5
A05p28190 Brassica napus HOM05D004364 ORTHO05D006299 0.0e+00 1250.0 809 75.5
Oeu060533.1 Olea europaea HOM05D004364 ORTHO05D006299 0.0e+00 1250.0 812 76.5
C05p43630 Brassica napus HOM05D004364 ORTHO05D006299 0.0e+00 1249.6 809 75.6
BraA05t21700Z Brassica rapa HOM05D004364 ORTHO05D006299 0.0e+00 1248.8 810 75.4
CAN.G162.111 Capsicum annuum HOM05D004364 ORTHO05D006299 0.0e+00 1248.4 809 75.3
BolC5t33082H Brassica oleracea HOM05D004364 ORTHO05D006299 0.0e+00 1246.5 810 75.7
Cc05_g12790 Coffea canephora HOM05D004364 ORTHO05D006299 0.0e+00 1244.6 805 75.5
BcaB06g26128 Brassica carinata HOM05D004364 ORTHO05D006299 0.0e+00 1241.1 809 74.9
Nitab4.5_0001386g0060 Nicotiana tabacum HOM05D004364 ORTHO05D006299 0.0e+00 1239.6 809 75.0
Ah.04g165340 Amaranthus hybridus HOM05D004364 ORTHO05D006299 0.0e+00 1238.4 815 75.5
EL10Ac4g08041 Beta vulgaris HOM05D004364 ORTHO05D006299 0.0e+00 1236.1 813 74.7
DCAR_008692 Daucus carota HOM05D004364 ORTHO05D006299 0.0e+00 1232.6 802 74.9
BcaC05g28303 Brassica carinata HOM05D004364 ORTHO05D006299 0.0e+00 1231.9 811 75.2
MSTRG.12935 Avicennia marina HOM05D004364 ORTHO05D006299 0.0e+00 1231.1 811 74.6
Migut.H01895 Erythranthe guttata HOM05D004364 ORTHO05D006299 0.0e+00 1230.3 811 74.2
Aa31LG8G7430 Aethionema arabicum HOM05D004364 ORTHO05D006299 0.0e+00 1226.8 865 71.1
ATR1132G023 Amborella trichopoda HOM05D004364 ORTHO05D006299 0.0e+00 1217.6 859 70.0
Hund02178 Selenicereus undatus HOM05D004364 ORTHO05D006299 0.0e+00 1214.1 810 74.3
Aqoxy5G02435 Aquilegia oxysepala HOM05D004364 ORTHO05D006299 0.0e+00 1209.5 813 74.7
SalBow7G1127 Salvia bowleyana HOM05D004364 ORTHO05D006299 0.0e+00 1207.2 872 69.2
HPP92_005995 Vanilla planifolia HOM05D004364 ORTHO05D006299 0.0e+00 1199.1 811 72.0
COL.COLO4_09498 Corchorus olitorius HOM05D004364 ORTHO05D006299 0.0e+00 1198.3 811 74.5
Peaxi162Scf01216g00070 Petunia axillaris HOM05D004364 ORTHO05D006299 0.0e+00 1197.2 809 73.9
Carub.0003s2061 Capsella rubella HOM05D004364 ORTHO05D006299 0.0e+00 1185.2 768 76.3
Zm00001eb336890 Zea mays HOM05D004364 ORTHO05D006299 0.0e+00 1179.5 812 71.2
vmacro09573 Vaccinium macrocarpon HOM05D004364 ORTHO05D006299 0.0e+00 1177.2 970 63.5
SEGI_22005 Sequoiadendron giganteum HOM05D004364 ORTHO05D006299 0.0e+00 1174.5 811 70.9
CSS0013066 Camellia sinensis var. sinensis HOM05D004364 ORTHO05D006299 0.0e+00 1172.9 812 72.9
CDE01G0428 Ceratophyllum demersum HOM05D004364 ORTHO05D006299 0.0e+00 1170.2 830 71.0
SGA_v2.0_scaffold9G04963 Striga asiatica HOM05D004364 ORTHO05D006299 0.0e+00 1170.2 811 71.5
Os01g0177200 Oryza sativa ssp. japonica HOM05D004364 ORTHO05D006299 0.0e+00 1169.5 810 70.6
QL08p017220 Quercus lobata HOM05D004364 ORTHO05D006299 0.0e+00 1169.5 967 63.7
Nitab4.5_0000092g0270 Nicotiana tabacum HOM05D004364 ORTHO05D006299 0.0e+00 1148.7 809 71.4
RhsimUnG0257500 Rhododendron simsii HOM05D004364 ORTHO05D006299 0.0e+00 1137.1 968 62.0
Lsat_1_v5_gn_0_5341 Lactuca sativa HOM05D004364 ORTHO05D006299 0.0e+00 1127.1 783 70.8
Mapoly0028s0083 Marchantia polymorpha HOM05D004364 ORTHO05D006299 0.0e+00 1127.1 813 68.0
Nitab4.5_0000297g0190 Nicotiana tabacum HOM05D004364 ORTHO05D006299 0.0e+00 1090.9 810 68.6
Pp3c19_17130 Physcomitrium patens HOM05D004364 ORTHO05D006299 0.0e+00 1086.6 821 65.7
Manes.15G081800 Manihot esculenta HOM05D004364 ORTHO05D006299 4.4e-305 1051.2 816 67.2
Dinv22351 Davidia involucrata HOM05D004364 ORTHO05D006299 2.0e-289 999.2 605 80.2
SMO347G0465 Selaginella moellendorffii HOM05D004364 ORTHO05D006299 4.5e-289 998.0 801 61.8
unitig_21.g20140 Utricularia gibba HOM05D004364 ORTHO05D006299 3.5e-278 961.8 806 60.5
TAR624G0100 Trochodendron aralioides HOM05D004364 ORTHO05D006299 6.5e-248 861.3 780 60.4
PRCOL_00003961 Prasinoderma coloniale HOM05D004364 ORTHO05D006299 3.3e-199 699.5 854 45.4
VMungo1127G0244 Vigna mungo HOM05D004364 ORTHO05D006299 4.7e-190 669.1 381 84.3
Haze_26164 Corylus avellana HOM05D004364 ORTHO05D006299 8.1e-166 588.6 833 42.0
Nitab4.5_0001252g0070 Nicotiana tabacum HOM05D004364 ORTHO05D006299 5.5e-162 575.9 808 43.9
MCO15G328 Micromonas commoda HOM05D004364 ORTHO05D006299 2.3e-152 543.9 848 39.3
Cre02.g080350 Chlamydomonas reinhardtii HOM05D004364 ORTHO05D006299 2.4e-149 533.9 944 35.6
CBR_g17932 Chara braunii HOM05D004364 ORTHO05D006299 2.3e-120 437.6 469 51.8
SHI10080 Sapria himalayana HOM05D004364 ORTHO05D006299 9.1e-117 425.6 320 65.6
TAR624G1198 Trochodendron aralioides HOM05D004364 ORTHO05D006299 3.7e-110 403.7 248 76.2
Lj1g0005584 Lotus japonicus HOM05D004364 ORTHO05D006299 1.8e-109 401.4 355 62.0
arahy.Tifrunner.gnm1.ann1.CZGD0C Arachis hypogaea HOM05D004364 ORTHO05D006299 5.8e-87 326.6 241 69.3
Peaxi162Scf00177g00118 Petunia axillaris HOM05D004364 ORTHO05D006299 9.5e-74 282.7 205 71.2
Actinidia35287 Actinidia chinensis HOM05D004364 ORTHO05D006299 5.6e-66 256.9 175 73.7
Sed0014921 Sechium edule HOM05D004364 ORTHO05D006299 2.4e-56 224.9 302 46.4
GSVIVG01015715001 Vitis vinifera HOM05D004364 ORTHO05D019261 4.8e-49 200.7 142 73.9
TPR.G1046 Trifolium pratense HOM05D004364 ORTHO05D019261 1.8e-43 182.2 195 55.4
GSVIVG01014461001 Vitis vinifera HOM05D004364 ORTHO05D006299 5.3e-40 170.6 103 78.6
Rhsim03G0198500 Rhododendron simsii HOM05D004364 ORTHO05D006299 2.9e-38 164.9 90 82.2
Lj1g0002875 Lotus japonicus HOM05D004364 ORTHO05D236196 1.2e-36 159.5 266 43.6
SEGI_32785 Sequoiadendron giganteum HOM05D004364 ORTHO05D014012 1.0e-35 156.4 108 64.8
MD15G1178100 Malus domestica HOM05D004364 ORTHO05D246722 2.6e-31 141.7 178 47.8
GSVIVG01015714001 Vitis vinifera HOM05D004364 ORTHO05D019261 5.9e-31 140.6 102 70.6
DCAR_027147 Daucus carota HOM05D004364 ORTHO05D006299 1.3e-30 139.4 110 63.6
Medtr8g464880 Medicago truncatula HOM05D004364 ORTHO05D019261 2.7e-28 131.7 123 61.0
Pp3c21_16740 Physcomitrium patens HOM05D004364 ORTHO05D006299 4.6e-28 131.0 190 43.7
GSVIVG01014462001 Vitis vinifera HOM05D004364 ORTHO05D019261 7.9e-28 130.2 80 81.2
CBR_g76006 Chara braunii HOM05D004364 ORTHO05D006299 2.2e-25 122.1 113 53.1
Lj8A161G44 Lonicera japonica HOM05D004364 ORTHO05D006299 2.4e-24 118.6 183 43.2
SEGI_31233 Sequoiadendron giganteum HOM05D004364 ORTHO05D019261 9.1e-24 116.7 121 54.5
Medtr4g077475 Medicago truncatula HOM05D004364 ORTHO05D006299 7.7e-23 113.6 266 30.5
SHI10079 Sapria himalayana HOM05D004364 ORTHO05D006299 2.5e-21 108.6 109 55.0
Sabra16G0271600 Salix brachista HOM05D004364 ORTHO05D006299 9.4e-21 106.7 69 75.4
GSVIVG01015716001 Vitis vinifera HOM05D004364 ORTHO05D439286 2.0e-18 99.0 59 79.7
GSVIVG01014463001 Vitis vinifera HOM05D004364 ORTHO05D441130 9.7e-18 96.7 68 70.6
Nn8g40041 Nelumbo nucifera HOM05D004364 ORTHO05D006299 2.2e-17 95.5 50 84.0
TAR624G0891 Trochodendron aralioides HOM05D000008 ORTHO05D000005 3.7e-17 94.7 73 67.1
Nn6g32117 Nelumbo nucifera HOM05D004364 ORTHO05D006299 1.1e-16 93.2 43 93.0
TAR011G0002 Trochodendron aralioides HOM05D004364 ORTHO05D019261 7.0e-16 90.5 159 42.8
Nn6g32116 Nelumbo nucifera HOM05D004364 ORTHO05D014012 6.1e-12 77.4 57 70.2
MD15G1178000 Malus domestica HOM05D004364 ORTHO05D006299 5.2e-11 74.3 59 54.2
Sed0011564 Sechium edule HOM05D000344 ORTHO05D003478 4.8e-09 67.8 427 22.2
Lj8A161T45 Lonicera japonica HOM05D004364 ORTHO05D019261 6.3e-09 67.4 69 60.9
Lj1g0025632 Lotus japonicus HOM05D004364 ORTHO05D006299 2.4e-08 65.5 129 35.7
PGR044G0522 Punica granatum HOM05D000344 ORTHO05D003478 4.1e-08 64.7 470 22.3
CBR_g21302 Chara braunii HOM05D002714 ORTHO05D020415 1.2e-07 63.2 329 24.0
Rhsim05G0038700 Rhododendron simsii HOM05D031300 ORTHO05D339751 1.6e-07 62.8 78 43.6
BcaC02g07665 Brassica carinata HOM05D001091 ORTHO05D001020 2.0e-07 62.4 305 24.6
Gohir.D05G357560 Gossypium hirsutum HOM05D004364 ORTHO05D017991 2.0e-07 62.4 57 59.6
Gohir.D10G199250 Gossypium hirsutum HOM05D004364 ORTHO05D017991 3.5e-07 61.6 57 59.6
Gohir.D11G177550 Gossypium hirsutum HOM05D004364 ORTHO05D017991 3.5e-07 61.6 57 59.6
Gohir.D05G317650 Gossypium hirsutum HOM05D003868 ORTHO05D017991 1.0e-06 60.1 54 61.1
Gorai.002G149500 Gossypium raimondii HOM05D003868 ORTHO05D017991 1.3e-06 59.7 57 56.1
MSTRG.10651 Avicennia marina HOM05D000344 ORTHO05D003478 2.2e-06 58.9 501 19.8
Gohir.A09G086698 Gossypium hirsutum HOM05D003868 ORTHO05D017991 2.9e-06 58.5 54 59.3
Gohir.D03G046101 Gossypium hirsutum HOM05D003868 ORTHO05D017991 2.9e-06 58.5 54 59.3
Gohir.D05G358720 Gossypium hirsutum HOM05D003868 ORTHO05D017991 2.9e-06 58.5 54 59.3
Gohir.D13G088850 Gossypium hirsutum HOM05D003868 ORTHO05D017991 2.9e-06 58.5 54 59.3
Oeu003914.1 Olea europaea HOM05D003775 ORTHO05D004314 3.8e-06 58.2 281 26.3
Nn8g40042 Nelumbo nucifera HOM05D004364 ORTHO05D006299 5.0e-06 57.8 34 82.4


User provided reference genes

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