Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.F00083 Eucalyptus grandis HOM05D006776 ORTHO05D007603 4.3e-264 914.1 448 100.0
Dinv39223 Davidia involucrata HOM05D006776 ORTHO05D007603 9.4e-203 710.3 459 77.3
Rhsim07G0219900 Rhododendron simsii HOM05D006776 ORTHO05D007603 1.4e-201 706.4 459 76.0
PGR083G0271 Punica granatum HOM05D006776 ORTHO05D007603 4.4e-200 701.4 449 77.1
CiPaw.07G175000 Carya illinoinensis HOM05D006776 ORTHO05D007603 1.2e-197 693.3 450 75.6
RcHm_v2.0_Chr6g0309581 Rosa chinensis HOM05D006776 ORTHO05D007603 1.2e-197 693.3 450 74.9
Atru.chr13.832 Acer truncatum HOM05D006776 ORTHO05D007603 5.9e-197 691.0 429 77.6
MD15G1070100 Malus domestica HOM05D006776 ORTHO05D007603 1.0e-196 690.3 450 74.2
Manes.05G181900 Manihot esculenta HOM05D006776 ORTHO05D007603 1.3e-196 689.9 454 74.0
Prupe.1G422900 Prunus persica HOM05D006776 ORTHO05D007603 1.5e-195 686.4 450 75.8
CSS0038791 Camellia sinensis var. sinensis HOM05D006776 ORTHO05D007603 1.9e-195 686.0 454 74.9
FvH4_2g33100 Fragaria vesca HOM05D006776 ORTHO05D007603 3.2e-195 685.3 450 74.0
Ciclev10001152m.g Citrus clementina HOM05D006776 ORTHO05D007603 4.2e-195 684.9 451 74.7
Actinidia08248 Actinidia chinensis HOM05D006776 ORTHO05D007603 7.2e-195 684.1 460 73.7
FAN27G1522 Fragaria x ananassa HOM05D006776 ORTHO05D007603 7.2e-195 684.1 450 73.8
FAN15G0723 Fragaria x ananassa HOM05D006776 ORTHO05D007603 1.6e-194 682.9 450 73.6
FAN20G0940 Fragaria x ananassa HOM05D006776 ORTHO05D007603 2.1e-194 682.6 450 73.3
FAN24G3456 Fragaria x ananassa HOM05D006776 ORTHO05D007603 4.7e-194 681.4 450 73.3
GSVIVG01009344001 Vitis vinifera HOM05D006776 ORTHO05D007603 3.3e-192 675.2 459 72.3
COL.COLO4_28506 Corchorus olitorius HOM05D006776 ORTHO05D007603 4.4e-192 674.9 451 72.9
Hma1.2p1_0819F.1_g223710 Hydrangea macrophylla HOM05D006776 ORTHO05D007603 5.7e-192 674.5 430 75.6
TAR376G1186 Trochodendron aralioides HOM05D006776 ORTHO05D007603 5.7e-192 674.5 458 72.9
CANSAT21G2159 Cannabis sativa HOM05D006776 ORTHO05D007603 6.3e-191 671.0 450 72.7
Thecc.08G088800 Theobroma cacao HOM05D006776 ORTHO05D007603 6.3e-191 671.0 451 73.2
QL12p038088 Quercus lobata HOM05D006776 ORTHO05D007603 3.1e-190 668.7 486 68.7
Lsat_1_v5_gn_4_131640 Lactuca sativa HOM05D006776 ORTHO05D007603 2.0e-189 666.0 457 72.2
Cc10_g05780 Coffea canephora HOM05D006776 ORTHO05D007603 4.5e-189 664.8 458 72.7
Potri.014G016100 Populus trichocarpa HOM05D006776 ORTHO05D007603 5.9e-189 664.5 453 72.8
Gohir.A05G210000 Gossypium hirsutum HOM05D006776 ORTHO05D007603 2.2e-188 662.5 451 72.1
Gohir.D05G213300 Gossypium hirsutum HOM05D006776 ORTHO05D007603 5.0e-188 661.4 451 72.3
Cpa.g.sc142.25 Carica papaya HOM05D006776 ORTHO05D007603 1.1e-187 660.2 429 74.1
CsaV3_2G026140 Cucumis sativus L. HOM05D006776 ORTHO05D007603 1.5e-187 659.8 451 72.5
arahy.Tifrunner.gnm1.ann1.YEFH3D Arachis hypogaea HOM05D006776 ORTHO05D007603 1.9e-187 659.4 450 71.3
Cfa013778 Carpinus fangiana HOM05D006776 ORTHO05D007603 3.6e-186 655.2 451 72.9
Medtr3g103170 Medicago truncatula HOM05D006776 ORTHO05D007603 3.6e-186 655.2 449 70.6
arahy.Tifrunner.gnm1.ann1.SBJ000 Arachis hypogaea HOM05D006776 ORTHO05D007603 6.1e-186 654.4 447 70.9
Nn1g04555 Nelumbo nucifera HOM05D006776 ORTHO05D007603 1.8e-185 652.9 457 70.0
Lj1g0026753 Lotus japonicus HOM05D006776 ORTHO05D007603 5.2e-185 651.4 450 70.0
Ca_15900_v3 Cicer arietinum L. HOM05D006776 ORTHO05D007603 6.8e-185 651.0 448 70.5
MELO3C010806.2 Cucumis melo HOM05D006776 ORTHO05D007603 2.6e-184 649.0 457 71.1
Lalb_Chr11g0062871 Lupinus albus HOM05D006776 ORTHO05D007603 2.6e-184 649.0 449 69.5
Aqoxy5G00870 Aquilegia oxysepala HOM05D006776 ORTHO05D007603 1.3e-183 646.7 456 69.5
HanXRQChr09g0266761 Helianthus annuus HOM05D006776 ORTHO05D007603 2.8e-183 645.6 459 69.1
ClCG08G016470 Citrullus lanatus HOM05D006776 ORTHO05D007603 1.4e-182 643.3 439 72.0
Sed0026542 Sechium edule HOM05D006776 ORTHO05D007603 1.8e-182 642.9 430 73.7
Glyma.06G046400 Glycine max HOM05D006776 ORTHO05D007603 2.4e-182 642.5 450 69.1
MSTRG.22221 Avicennia marina HOM05D006776 ORTHO05D007603 3.1e-182 642.1 456 70.2
Lj4A758G74 Lonicera japonica HOM05D006776 ORTHO05D007603 3.1e-182 642.1 418 74.4
PGSC0003DMG400011544 Solanum tuberosum HOM05D006776 ORTHO05D007603 5.4e-182 641.3 455 70.3
Glyma.04G045700 Glycine max HOM05D006776 ORTHO05D007603 2.7e-181 639.0 453 69.1
Migut.N02781 Erythranthe guttata HOM05D006776 ORTHO05D007603 3.5e-181 638.6 458 69.7
ECA232G1156 Erigeron canadensis HOM05D006776 ORTHO05D007603 4.5e-181 638.3 457 68.3
Psat5g038960 Pisum sativum HOM05D006776 ORTHO05D007603 1.3e-180 636.7 449 68.8
TPR.G33723 Trifolium pratense HOM05D006776 ORTHO05D007603 2.3e-180 636.0 449 69.0
VMungo1309G0963 Vigna mungo HOM05D006776 ORTHO05D007603 2.3e-180 636.0 450 69.1
Oeu053611.1 Olea europaea HOM05D006776 ORTHO05D007603 2.9e-180 635.6 457 69.1
Sabra14G0010000 Salix brachista HOM05D006776 ORTHO05D007603 6.6e-180 634.4 452 70.8
Sopen12g030330 Solanum pennellii HOM05D006776 ORTHO05D007603 6.6e-180 634.4 455 69.5
Phvul.009G071700 Phaseolus vulgaris HOM05D006776 ORTHO05D007603 1.1e-179 633.6 450 68.7
Solyc12g088340.2 Solanum lycopersicum HOM05D006776 ORTHO05D007603 1.1e-179 633.6 455 69.5
Nitab4.5_0002314g0100 Nicotiana tabacum HOM05D006776 ORTHO05D007603 1.9e-179 632.9 455 70.3
Nitab4.5_0008551g0030 Nicotiana tabacum HOM05D006776 ORTHO05D007603 2.5e-179 632.5 428 73.4
EL10Ac1g02384 Beta vulgaris HOM05D006776 ORTHO05D007603 4.2e-179 631.7 459 69.5
TWI56G0429 Tripterygium wilfordii HOM05D006776 ORTHO05D007603 8.0e-178 627.5 449 70.2
Hund23872 Selenicereus undatus HOM05D006776 ORTHO05D007603 1.4e-177 626.7 458 69.7
DCAR_012816 Daucus carota HOM05D006776 ORTHO05D007603 2.0e-176 622.9 451 66.5
THA.LOC104814190 Tarenaya hassleriana HOM05D006776 ORTHO05D007603 1.3e-175 620.2 455 68.6
Ah.11g042830 Amaranthus hybridus HOM05D006776 ORTHO05D007603 3.7e-175 618.6 459 68.2
Haze_22436 Corylus avellana HOM05D006776 ORTHO05D007603 1.1e-174 617.1 402 76.6
Gorai.009G219900 Gossypium raimondii HOM05D006776 ORTHO05D007603 1.1e-174 617.1 413 73.1
SGA_v2.0_scaffold152G36804 Striga asiatica HOM05D006776 ORTHO05D007603 1.1e-174 617.1 514 61.9
AT1G27840 Arabidopsis thaliana HOM05D006776 ORTHO05D007603 1.0e-172 610.5 453 67.3
PSO170G0170 Papaver somniferum HOM05D006776 ORTHO05D007603 2.3e-172 609.4 456 66.7
Sp1g24040 Schrenkiella parvula HOM05D006776 ORTHO05D007603 6.6e-172 607.8 453 67.8
AL1G41330 Arabidopsis lyrata HOM05D006776 ORTHO05D007603 1.5e-171 606.7 453 66.9
PSO017G0681 Papaver somniferum HOM05D006776 ORTHO05D007603 4.3e-171 605.1 456 66.2
ATR0820G216 Amborella trichopoda HOM05D006776 ORTHO05D007603 1.4e-169 600.1 456 64.9
C05p26470 Brassica napus HOM05D006776 ORTHO05D007603 1.4e-169 600.1 453 66.7
BolC5t31368H Brassica oleracea HOM05D006776 ORTHO05D007603 1.4e-169 600.1 453 66.7
unitig_578.g16149 Utricularia gibba HOM05D006776 ORTHO05D007603 1.8e-169 599.7 458 65.1
A09p38320 Brassica napus HOM05D006776 ORTHO05D007603 3.1e-169 599.0 453 66.0
Sc15g0005690 Simmondsia chinensis HOM05D006776 ORTHO05D007603 3.1e-169 599.0 410 72.9
CARHR027300 Cardamine hirsuta HOM05D006776 ORTHO05D007603 4.0e-169 598.6 454 66.3
HPP92_001976 Vanilla planifolia HOM05D006776 ORTHO05D007603 4.0e-169 598.6 456 64.7
BcaNung06155 Brassica carinata HOM05D006776 ORTHO05D007603 1.5e-168 596.7 454 66.7
Hma1.2p1_0819F.1_g223700 Hydrangea macrophylla HOM05D006776 ORTHO05D007603 7.5e-168 594.3 385 75.8
BraA09t39342Z Brassica rapa HOM05D006776 ORTHO05D007603 1.3e-167 593.6 454 65.9
Peaxi162Scf00160g00527 Petunia axillaris HOM05D006776 ORTHO05D007603 2.2e-167 592.8 435 70.6
CDE04G2973 Ceratophyllum demersum HOM05D006776 ORTHO05D007603 1.2e-165 587.0 458 63.3
Thhalv10007615m.g Eutrema salsugineum HOM05D006776 ORTHO05D007603 7.8e-165 584.3 413 70.5
Aa31sc113G60 Aethionema arabicum HOM05D006776 ORTHO05D007603 2.5e-163 579.3 457 65.6
Zm00001eb147340 Zea mays HOM05D006776 ORTHO05D007603 8.9e-161 570.9 456 62.9
Duzib116G0586 Durio zibethinus HOM05D006776 ORTHO05D007603 2.0e-160 569.7 383 72.8
BcaNung06153 Brassica carinata HOM05D006776 ORTHO05D007603 1.3e-159 567.0 453 63.8
AUR62038776 Chenopodium quinoa HOM05D006776 ORTHO05D007603 2.2e-151 539.7 410 66.8
vmacro22055 Vaccinium macrocarpon HOM05D006776 ORTHO05D007603 6.8e-145 518.1 372 69.6
MD08G1082700 Malus domestica HOM05D006776 ORTHO05D007603 5.1e-132 475.3 371 65.8
Pp3c22_5850 Physcomitrium patens HOM05D006776 ORTHO05D007603 4.5e-128 462.2 458 50.0
Mapoly0043s0035 Marchantia polymorpha HOM05D006776 ORTHO05D007603 2.2e-127 459.9 464 50.0
BcaC05g26777 Brassica carinata HOM05D006776 ORTHO05D007603 6.9e-121 438.3 458 54.8
AagrBONN_evm.TU.Sc2ySwM_228.2971 Anthoceros agrestis HOM05D006776 ORTHO05D007603 9.9e-120 434.5 454 50.4
AT1G19750 Arabidopsis thaliana HOM05D006776 ORTHO05D007603 3.8e-119 432.6 337 65.0
SMO203G0215 Selaginella moellendorffii HOM05D006776 ORTHO05D007603 1.4e-118 430.6 455 48.4
AUR62037473 Chenopodium quinoa HOM05D006776 ORTHO05D007603 1.4e-113 414.1 288 71.2
Carub.0001s2630 Capsella rubella HOM05D006776 ORTHO05D007603 2.8e-106 389.8 310 63.9
CDE02G3909 Ceratophyllum demersum HOM05D006776 ORTHO05D007603 2.3e-100 370.2 386 50.5
CBR_g4873 Chara braunii HOM05D006776 ORTHO05D007603 4.3e-99 365.9 516 40.3
SMO353G0131 Selaginella moellendorffii HOM05D006776 ORTHO05D007603 1.7e-87 327.4 462 41.1
MD08G1084000 Malus domestica HOM05D006776 ORTHO05D007603 1.7e-79 300.8 243 65.4
SEGI_38356 Sequoiadendron giganteum HOM05D006776 ORTHO05D007603 2.2e-74 283.9 191 69.1
MCO02G266 Micromonas commoda HOM05D006776 ORTHO05D007603 2.1e-69 267.3 442 37.1
SEGI_36074 Sequoiadendron giganteum HOM05D006776 ORTHO05D007603 1.5e-67 261.2 224 56.7
Os02g0307200 Oryza sativa ssp. japonica HOM05D006776 ORTHO05D007603 1.7e-66 257.7 191 66.0
PRCOL_00002749 Prasinoderma coloniale HOM05D006776 ORTHO05D007603 5.1e-39 166.4 462 27.5
Cre01.g032100 Chlamydomonas reinhardtii HOM05D006776 ORTHO05D007603 1.9e-38 164.5 292 34.6
Lsat_1_v5_gn_7_88960 Lactuca sativa HOM05D006776 ORTHO05D007603 1.4e-36 158.3 107 69.2
Cre01.g032139 Chlamydomonas reinhardtii HOM05D006776 ORTHO05D007603 2.1e-21 107.8 125 40.8
HanXRQChr04g0100971 Helianthus annuus HOM05D000464 ORTHO05D006292 2.0e-11 74.7 325 23.4
Cc04_g10820 Coffea canephora HOM05D000464 ORTHO05D006292 1.7e-10 71.6 314 24.2
SGA_v2.0_scaffold7G04174 Striga asiatica HOM05D000464 ORTHO05D006292 4.9e-10 70.1 322 23.3
Psat5g117120 Pisum sativum HOM05D000464 ORTHO05D006292 8.4e-10 69.3 321 20.6
Migut.D02035 Erythranthe guttata HOM05D000464 ORTHO05D006292 1.1e-09 68.9 325 22.8
TAR629G1181 Trochodendron aralioides HOM05D000464 ORTHO05D006292 3.2e-09 67.4 333 22.8
Ah.11g047550 Amaranthus hybridus HOM05D006809 ORTHO05D008609 1.2e-08 65.5 214 26.2
ATR0580G338 Amborella trichopoda HOM05D000464 ORTHO05D006292 1.2e-08 65.5 335 23.3
AL8G24250 Arabidopsis lyrata HOM05D000464 ORTHO05D006292 2.1e-08 64.7 260 24.2
ECA247G3798 Erigeron canadensis HOM05D000464 ORTHO05D006292 2.1e-08 64.7 391 22.8
VMungo0464G1091 Vigna mungo HOM05D002288 ORTHO05D002894 2.1e-08 64.7 319 23.2
AT5G50230 Arabidopsis thaliana HOM05D000464 ORTHO05D006292 2.7e-08 64.3 260 23.8
Solyc02g078970.4 Solanum lycopersicum HOM05D002303 ORTHO05D006504 2.7e-08 64.3 229 23.1
Carub.0008s1023 Capsella rubella HOM05D000464 ORTHO05D006292 3.5e-08 63.9 278 23.7
Medtr3g075400 Medicago truncatula HOM05D000464 ORTHO05D006292 3.5e-08 63.9 122 27.9
Nitab4.5_0001170g0230 Nicotiana tabacum HOM05D002303 ORTHO05D006504 4.6e-08 63.5 229 23.1
Cpa.g.sc1360.1 Carica papaya HOM05D000464 ORTHO05D000408 6.0e-08 63.2 134 28.4
Thhalv10013321m.g Eutrema salsugineum HOM05D000464 ORTHO05D006292 6.0e-08 63.2 260 24.6
CARHR079410 Cardamine hirsuta HOM05D000792 ORTHO05D004195 7.9e-08 62.8 234 24.4
Peaxi162Scf00527g00063 Petunia axillaris HOM05D002303 ORTHO05D006504 7.9e-08 62.8 221 23.1
COL.COLO4_04956 Corchorus olitorius HOM05D000464 ORTHO05D006292 1.0e-07 62.4 118 28.0
MBI10_g14637_MAGBIO Magnolia biondii HOM05D000464 ORTHO05D006292 1.0e-07 62.4 121 28.1
Nitab4.5_0003676g0010 Nicotiana tabacum HOM05D002303 ORTHO05D006504 1.3e-07 62.0 229 22.7
AagrBONN_evm.TU.Sc2ySwM_344.121 Anthoceros agrestis HOM05D000464 ORTHO05D006292 2.3e-07 61.2 127 28.3
FvH4_7g34000 Fragaria vesca HOM05D004758 ORTHO05D006063 3.0e-07 60.8 156 25.0
MELO3C026239.2 Cucumis melo HOM05D000464 ORTHO05D006292 3.9e-07 60.5 129 26.4
CsaV3_1G000870 Cucumis sativus L. HOM05D000464 ORTHO05D006292 3.9e-07 60.5 129 26.4
Aa31LG3G6060 Aethionema arabicum HOM05D000464 ORTHO05D006292 5.1e-07 60.1 117 27.4
Cfa009142 Carpinus fangiana HOM05D002303 ORTHO05D006504 5.1e-07 60.1 229 21.8
Haze_12176 Corylus avellana HOM05D002303 ORTHO05D006504 5.1e-07 60.1 250 22.0
Dinv26878 Davidia involucrata HOM05D002634 ORTHO05D003100 5.1e-07 60.1 214 25.2
EL10Ac5g11165 Beta vulgaris HOM05D006809 ORTHO05D008609 6.7e-07 59.7 202 25.7
FAN10G3249 Fragaria x ananassa HOM05D004758 ORTHO05D006063 8.7e-07 59.3 156 25.0
TAR383G0657 Trochodendron aralioides HOM05D003006 ORTHO05D003438 8.7e-07 59.3 224 23.7
Manes.14G087700 Manihot esculenta HOM05D006809 ORTHO05D008609 1.1e-06 58.9 211 25.6
CSS0020904 Camellia sinensis var. sinensis HOM05D006809 ORTHO05D008609 1.5e-06 58.5 206 24.3
CSS0043969 Camellia sinensis var. sinensis HOM05D006809 ORTHO05D008609 1.5e-06 58.5 206 24.3
DCAR_013994 Daucus carota HOM05D000347 ORTHO05D001997 1.5e-06 58.5 171 24.6
SalBow7G0942 Salvia bowleyana HOM05D001610 ORTHO05D001585 1.5e-06 58.5 250 25.6
Sopen12g018840 Solanum pennellii HOM05D006809 ORTHO05D008609 1.5e-06 58.5 209 24.9
BcaC05g29993 Brassica carinata HOM05D000792 ORTHO05D004195 2.5e-06 57.8 234 22.6
Sc12g0007330 Simmondsia chinensis HOM05D006809 ORTHO05D008609 2.5e-06 57.8 211 25.1
Sc12g0008880 Simmondsia chinensis HOM05D004669 ORTHO05D005767 2.5e-06 57.8 320 20.6
Aa31LG5G15360 Aethionema arabicum HOM05D000792 ORTHO05D004195 3.3e-06 57.4 234 22.2
BraA03t13789Z Brassica rapa HOM05D006809 ORTHO05D008609 3.3e-06 57.4 214 25.7
CSS0009653 Camellia sinensis var. sinensis HOM05D004669 ORTHO05D005767 3.3e-06 57.4 320 20.9
CDE08G0852 Ceratophyllum demersum HOM05D000464 ORTHO05D006292 3.3e-06 57.4 139 27.3
FAN08G0740 Fragaria x ananassa HOM05D006809 ORTHO05D008609 3.3e-06 57.4 208 26.0
PSO063G1093 Papaver somniferum HOM05D000464 ORTHO05D006292 3.3e-06 57.4 127 25.2
Eucgr.K02539 Eucalyptus grandis HOM05D006809 ORTHO05D008609 4.3e-06 57.0 214 24.3
Lj5A133T97 Lonicera japonica HOM05D000464 ORTHO05D006292 4.3e-06 57.0 325 21.5
SGA_v2.0_scaffold2G00914 Striga asiatica HOM05D002236 ORTHO05D002341 4.3e-06 57.0 234 25.2
TPR.G22908 Trifolium pratense HOM05D000464 ORTHO05D006292 4.3e-06 57.0 321 19.0
Actinidia08243 Actinidia chinensis HOM05D002634 ORTHO05D003100 5.6e-06 56.6 205 25.4
A03p46650 Brassica napus HOM05D006809 ORTHO05D008609 5.6e-06 56.6 225 26.2
DCAR_010163 Daucus carota HOM05D006809 ORTHO05D008609 5.6e-06 56.6 219 22.8
SMO228G0026 Selaginella moellendorffii HOM05D003769 ORTHO05D004521 5.6e-06 56.6 122 26.2
Sopen02g023780 Solanum pennellii HOM05D002303 ORTHO05D006504 5.6e-06 56.6 229 21.4
PGSC0003DMG400022364 Solanum tuberosum HOM05D002303 ORTHO05D006504 5.6e-06 56.6 229 21.4
FAN13G1268 Fragaria x ananassa HOM05D006809 ORTHO05D008609 7.4e-06 56.2 208 25.5
PSO541G1463 Papaver somniferum HOM05D000684 ORTHO05D000688 7.4e-06 56.2 108 29.6
RcHm_v2.0_Chr1g0384251 Rosa chinensis HOM05D004758 ORTHO05D006063 7.4e-06 56.2 156 24.4
SMO276G0027 Selaginella moellendorffii HOM05D000347 ORTHO05D001997 7.4e-06 56.2 170 26.5
CiPaw.16G085300 Carya illinoinensis HOM05D003769 ORTHO05D004521 9.6e-06 55.8 120 25.8
PSO675G4498 Papaver somniferum HOM05D000684 ORTHO05D000688 9.6e-06 55.8 108 29.6
Potri.008G171600 Populus trichocarpa HOM05D003335 ORTHO05D003853 9.6e-06 55.8 211 27.5


User provided reference genes

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