Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.C04264 Eucalyptus grandis HOM05D004330 ORTHO05D005182 0.0e+00 1354.3 700 100.0
GSVIVG01012102001 Vitis vinifera HOM05D004330 ORTHO05D005182 0.0e+00 1235.7 700 89.9
RcHm_v2.0_Chr6g0249411 Rosa chinensis HOM05D004330 ORTHO05D005182 0.0e+00 1231.5 699 90.1
Prupe.1G566400 Prunus persica HOM05D004330 ORTHO05D005182 0.0e+00 1229.2 699 89.6
Dinv22060 Davidia involucrata HOM05D004330 ORTHO05D005182 0.0e+00 1227.6 698 90.0
Actinidia16901 Actinidia chinensis HOM05D004330 ORTHO05D005182 0.0e+00 1226.5 700 88.9
Cpa.g.sc249.10 Carica papaya HOM05D004330 ORTHO05D005182 0.0e+00 1224.5 699 89.3
Actinidia29358 Actinidia chinensis HOM05D004330 ORTHO05D005182 0.0e+00 1217.6 700 88.7
MD15G1440000 Malus domestica HOM05D004330 ORTHO05D005182 0.0e+00 1216.1 694 89.8
Ciclev10019077m.g Citrus clementina HOM05D004330 ORTHO05D005182 0.0e+00 1214.1 698 89.3
PGR031G1280 Punica granatum HOM05D004330 ORTHO05D005182 0.0e+00 1214.1 700 89.3
CANSAT01G1169 Cannabis sativa HOM05D004330 ORTHO05D005182 0.0e+00 1209.9 699 87.8
Thecc.08G188100 Theobroma cacao HOM05D004330 ORTHO05D005182 0.0e+00 1209.1 691 89.4
Manes.15G103100 Manihot esculenta HOM05D004330 ORTHO05D005182 0.0e+00 1208.0 688 89.8
Hma1.2p1_0016F.1_g011010 Hydrangea macrophylla HOM05D004330 ORTHO05D005182 0.0e+00 1205.7 700 87.9
Cfa008036 Carpinus fangiana HOM05D004330 ORTHO05D005182 0.0e+00 1204.9 700 88.0
MD08G1244900 Malus domestica HOM05D004330 ORTHO05D005182 0.0e+00 1204.1 692 89.0
CSS0001083 Camellia sinensis var. sinensis HOM05D004330 ORTHO05D005182 0.0e+00 1201.8 699 87.1
FvH4_2g00140 Fragaria vesca HOM05D004330 ORTHO05D005182 0.0e+00 1201.4 699 87.8
CiPaw.03G012300 Carya illinoinensis HOM05D004330 ORTHO05D005182 0.0e+00 1201.0 697 88.7
Gorai.009G264800 Gossypium raimondii HOM05D004330 ORTHO05D005182 0.0e+00 1199.5 691 88.6
FAN24G1765 Fragaria x ananassa HOM05D004330 ORTHO05D005182 0.0e+00 1198.3 704 87.5
Gohir.D05G252400 Gossypium hirsutum HOM05D004330 ORTHO05D005182 0.0e+00 1198.3 691 88.4
Gohir.A05G251400 Gossypium hirsutum HOM05D004330 ORTHO05D005182 0.0e+00 1198.0 691 88.4
QL09p001201 Quercus lobata HOM05D004330 ORTHO05D005182 0.0e+00 1192.6 700 87.4
Glyma.19G249400 Glycine max HOM05D004330 ORTHO05D005182 0.0e+00 1189.5 697 86.7
Sabra06G0020300 Salix brachista HOM05D004330 ORTHO05D005182 0.0e+00 1189.5 690 88.7
Potri.006G027100 Populus trichocarpa HOM05D004330 ORTHO05D005182 0.0e+00 1189.1 703 87.9
Glyma.03G252000 Glycine max HOM05D004330 ORTHO05D005182 0.0e+00 1187.6 697 86.7
Nitab4.5_0000079g0120 Nicotiana tabacum HOM05D004330 ORTHO05D005182 0.0e+00 1185.2 695 85.9
Phvul.006G106700 Phaseolus vulgaris HOM05D004330 ORTHO05D005182 0.0e+00 1184.5 697 86.5
Nn6g32085 Nelumbo nucifera HOM05D004330 ORTHO05D005182 0.0e+00 1183.7 697 85.9
FAN19G3045 Fragaria x ananassa HOM05D004330 ORTHO05D005182 0.0e+00 1179.5 703 86.9
VMungo0540G0979 Vigna mungo HOM05D004330 ORTHO05D005182 0.0e+00 1179.1 697 86.2
Lj5g0027584 Lotus japonicus HOM05D004330 ORTHO05D005182 0.0e+00 1178.7 688 87.4
Lalb_Chr04g0261991 Lupinus albus HOM05D004330 ORTHO05D005182 0.0e+00 1177.9 697 86.2
Nitab4.5_0007117g0020 Nicotiana tabacum HOM05D004330 ORTHO05D005182 0.0e+00 1177.2 695 85.8
TWI12G0377 Tripterygium wilfordii HOM05D004330 ORTHO05D005182 0.0e+00 1176.4 715 85.2
CiPaw.04G008600 Carya illinoinensis HOM05D004330 ORTHO05D005182 0.0e+00 1175.6 697 87.4
arahy.Tifrunner.gnm1.ann1.7LJM3H Arachis hypogaea HOM05D004330 ORTHO05D005182 0.0e+00 1175.2 687 87.0
arahy.Tifrunner.gnm1.ann1.A4ASB6 Arachis hypogaea HOM05D004330 ORTHO05D005182 0.0e+00 1175.2 687 87.0
arahy.Tifrunner.gnm1.ann1.KU2W2N Arachis hypogaea HOM05D004330 ORTHO05D005182 0.0e+00 1175.2 687 87.0
TAR628G0944 Trochodendron aralioides HOM05D004330 ORTHO05D005182 0.0e+00 1174.5 671 89.3
DCAR_024855 Daucus carota HOM05D004330 ORTHO05D005182 0.0e+00 1173.3 723 84.0
HanXRQChr05g0150611 Helianthus annuus HOM05D004330 ORTHO05D005182 0.0e+00 1172.1 697 84.9
PSO210G1668 Papaver somniferum HOM05D004330 ORTHO05D005182 0.0e+00 1171.0 688 86.2
Solyc02g094090.4 Solanum lycopersicum HOM05D004330 ORTHO05D005182 0.0e+00 1170.2 693 84.8
PSO761G0081 Papaver somniferum HOM05D004330 ORTHO05D005182 0.0e+00 1169.1 688 86.0
Aqoxy5G00868 Aquilegia oxysepala HOM05D004330 ORTHO05D005182 0.0e+00 1168.3 696 84.5
CAN.G473.93 Capsicum annuum HOM05D004330 ORTHO05D005182 0.0e+00 1168.3 693 85.1
Rhsim01G0101300 Rhododendron simsii HOM05D004330 ORTHO05D005182 0.0e+00 1168.3 710 84.5
Sopen02g038710 Solanum pennellii HOM05D004330 ORTHO05D005182 0.0e+00 1167.9 692 84.8
Peaxi162Scf00078g01141 Petunia axillaris HOM05D004330 ORTHO05D005182 0.0e+00 1164.8 712 83.6
Medtr1g079770 Medicago truncatula HOM05D004330 ORTHO05D005182 0.0e+00 1161.4 688 86.0
Cc10_g16170 Coffea canephora HOM05D004330 ORTHO05D005182 0.0e+00 1160.2 687 86.5
Carub.0002s1815 Capsella rubella HOM05D004330 ORTHO05D005182 0.0e+00 1159.4 700 83.1
Sp5g26470 Schrenkiella parvula HOM05D004330 ORTHO05D005182 0.0e+00 1159.1 700 83.3
AL2G30885 Arabidopsis lyrata HOM05D004330 ORTHO05D005182 0.0e+00 1157.5 700 83.1
AT1G71270 Arabidopsis thaliana HOM05D004330 ORTHO05D005182 0.0e+00 1157.5 700 83.0
BcaC08g46563 Brassica carinata HOM05D004330 ORTHO05D005182 0.0e+00 1157.1 700 83.1
C06p45370 Brassica napus HOM05D004330 ORTHO05D005182 0.0e+00 1157.1 700 83.1
CSS0008451 Camellia sinensis var. sinensis HOM05D004330 ORTHO05D005182 0.0e+00 1157.1 706 84.1
BcaB03g14885 Brassica carinata HOM05D004330 ORTHO05D005182 0.0e+00 1155.2 700 83.3
A07p37610 Brassica napus HOM05D004330 ORTHO05D005182 0.0e+00 1155.2 700 83.0
vmacro06107 Vaccinium macrocarpon HOM05D004330 ORTHO05D005182 0.0e+00 1154.4 727 81.6
ATR0580G447 Amborella trichopoda HOM05D004330 ORTHO05D005182 0.0e+00 1153.3 698 83.7
BolC6t39595H Brassica oleracea HOM05D004330 ORTHO05D005182 0.0e+00 1152.5 700 82.9
Duzib177G1138 Durio zibethinus HOM05D004330 ORTHO05D005182 0.0e+00 1152.5 691 86.5
Sc17g0000550 Simmondsia chinensis HOM05D004330 ORTHO05D005182 0.0e+00 1151.0 697 84.4
BraA07t31323Z Brassica rapa HOM05D004330 ORTHO05D005182 0.0e+00 1150.6 701 83.0
Lj7C415G17 Lonicera japonica HOM05D004330 ORTHO05D005182 0.0e+00 1150.2 697 83.9
Migut.G00904 Erythranthe guttata HOM05D004330 ORTHO05D005182 0.0e+00 1148.7 688 84.6
CsaV3_2G033380 Cucumis sativus L. HOM05D004330 ORTHO05D005182 0.0e+00 1147.5 700 84.6
Ca_09987_v3 Cicer arietinum L. HOM05D004330 ORTHO05D005182 0.0e+00 1147.1 687 85.2
Psat6g142240 Pisum sativum HOM05D004330 ORTHO05D005182 0.0e+00 1145.6 685 85.4
TPR.G10262 Trifolium pratense HOM05D004330 ORTHO05D005182 0.0e+00 1142.9 686 85.9
MELO3C008109.2 Cucumis melo HOM05D004330 ORTHO05D005182 0.0e+00 1142.1 718 82.7
Sed0024292 Sechium edule HOM05D004330 ORTHO05D005182 0.0e+00 1139.8 700 84.1
ECA246G0284 Erigeron canadensis HOM05D004330 ORTHO05D005182 0.0e+00 1138.6 694 82.6
THA.LOC104803377 Tarenaya hassleriana HOM05D004330 ORTHO05D005182 0.0e+00 1138.3 696 83.2
AUR62024682 Chenopodium quinoa HOM05D004330 ORTHO05D005182 0.0e+00 1137.5 690 83.6
Thhalv10018205m.g Eutrema salsugineum HOM05D004330 ORTHO05D005182 0.0e+00 1136.3 700 81.9
SalBow6G7193 Salvia bowleyana HOM05D004330 ORTHO05D005182 0.0e+00 1134.0 740 79.1
ClCG11G008260 Citrullus lanatus HOM05D004330 ORTHO05D005182 0.0e+00 1133.6 699 84.4
MSTRG.22475 Avicennia marina HOM05D004330 ORTHO05D005182 0.0e+00 1128.6 668 85.5
Ah.11g049400 Amaranthus hybridus HOM05D004330 ORTHO05D005182 0.0e+00 1127.1 690 82.6
EL10As5g23498 Beta vulgaris HOM05D004330 ORTHO05D005182 0.0e+00 1122.5 686 83.7
THA.LOC104823378 Tarenaya hassleriana HOM05D004330 ORTHO05D005182 0.0e+00 1120.1 696 81.9
Nitab4.5_0007150g0080 Nicotiana tabacum HOM05D004330 ORTHO05D005182 0.0e+00 1119.4 707 81.6
Oeu020638.1 Olea europaea HOM05D004330 ORTHO05D005182 0.0e+00 1119.4 759 77.3
Lsat_1_v5_gn_6_109860 Lactuca sativa HOM05D004330 ORTHO05D005182 0.0e+00 1107.4 668 84.0
Os03g0417900 Oryza sativa ssp. japonica HOM05D004330 ORTHO05D005182 0.0e+00 1104.0 697 79.9
Aa31LG4G9240 Aethionema arabicum HOM05D004330 ORTHO05D005182 0.0e+00 1097.0 742 76.7
SalBow6G1408 Salvia bowleyana HOM05D004330 ORTHO05D005182 0.0e+00 1092.4 740 77.6
Nitab4.5_0002887g0010 Nicotiana tabacum HOM05D004330 ORTHO05D005182 0.0e+00 1085.5 666 83.5
Aqoxy2G00735 Aquilegia oxysepala HOM05D004330 ORTHO05D005182 4.8e-312 1073.5 697 77.6
Carub.0002s1817 Capsella rubella HOM05D004330 ORTHO05D005182 3.4e-308 1061.2 690 78.3
unitig_37.g12692 Utricularia gibba HOM05D004330 ORTHO05D005182 1.0e-304 1049.7 720 75.1
AT1G71300 Arabidopsis thaliana HOM05D004330 ORTHO05D005182 1.2e-302 1042.7 741 72.5
COL.COLO4_37491 Corchorus olitorius HOM05D004330 ORTHO05D005182 2.3e-288 995.3 631 82.7
AUR62011839 Chenopodium quinoa HOM05D004330 ORTHO05D005182 3.9e-288 994.6 591 84.8
AL2G30900 Arabidopsis lyrata HOM05D004330 ORTHO05D005182 8.7e-288 993.4 626 80.5
AagrBONN_evm.TU.Sc2ySwM_228.5612 Anthoceros agrestis HOM05D004330 ORTHO05D005182 1.4e-277 959.5 700 68.6
AagrBONN_evm.TU.Sc2ySwM_228.5613 Anthoceros agrestis HOM05D004330 ORTHO05D005182 1.4e-277 959.5 700 68.6
HPP92_006305 Vanilla planifolia HOM05D004330 ORTHO05D005182 3.5e-273 944.9 584 81.2
Mapoly0091s0001 Marchantia polymorpha HOM05D004330 ORTHO05D005182 2.3e-272 942.2 700 66.7
Haze_02242 Corylus avellana HOM05D004330 ORTHO05D005182 4.1e-269 931.4 683 73.2
SMO304G0018 Selaginella moellendorffii HOM05D004330 ORTHO05D005182 5.3e-269 931.0 691 68.6
Pp3c4_27380 Physcomitrium patens HOM05D004330 ORTHO05D005182 2.0e-268 929.1 700 66.7
Hund19537 Selenicereus undatus HOM05D004330 ORTHO05D005182 9.0e-261 903.7 554 82.3
Zm00001eb393130 Zea mays HOM05D004330 ORTHO05D005182 7.7e-260 900.6 566 79.2
vmacro23409 Vaccinium macrocarpon HOM05D004330 ORTHO05D005182 5.5e-258 894.4 589 77.8
Atru.chr13.2589 Acer truncatum HOM05D004330 ORTHO05D005182 1.4e-256 889.8 510 89.6
SHI24508 Sapria himalayana HOM05D004330 ORTHO05D005182 3.9e-248 861.7 675 69.0
MBI16_g23303_MAGBIO Magnolia biondii HOM05D004330 ORTHO05D005182 1.7e-243 846.3 495 87.5
Os10g0488300 Oryza sativa ssp. japonica HOM05D004330 ORTHO05D005182 1.3e-227 793.5 680 58.8
Zm00001eb045280 Zea mays HOM05D004330 ORTHO05D005182 1.7e-214 750.0 693 55.1
CDE03G0141 Ceratophyllum demersum HOM05D004330 ORTHO05D005182 6.0e-204 714.9 423 83.0
COL.COLO4_33595 Corchorus olitorius HOM05D004330 ORTHO05D005182 1.8e-200 703.4 453 82.8
SEGI_21093 Sequoiadendron giganteum HOM05D004330 ORTHO05D005182 1.7e-158 563.9 328 83.5
MCO11G104 Micromonas commoda HOM05D004330 ORTHO05D005182 3.7e-153 546.2 758 42.3
Cre08.g367200 Chlamydomonas reinhardtii HOM05D004330 ORTHO05D005182 1.6e-145 520.8 777 38.0
Migut.C00321 Erythranthe guttata HOM05D004330 ORTHO05D005182 1.3e-137 494.6 280 88.2
CSS0031487 Camellia sinensis var. sinensis HOM05D004330 ORTHO05D005182 1.9e-125 454.1 270 83.0
Haze_02247 Corylus avellana HOM05D004330 ORTHO05D005182 4.2e-125 453.0 269 85.1
CBR_g54934 Chara braunii HOM05D004330 ORTHO05D005182 4.1e-120 436.4 359 63.0
COL.COLO4_00397 Corchorus olitorius HOM05D004330 ORTHO05D005182 4.0e-115 419.9 237 89.0
PRCOL_00005416 Prasinoderma coloniale HOM05D004330 ORTHO05D005182 4.0e-115 419.9 740 35.4
SGA_v2.0_scaffold227G43197 Striga asiatica HOM05D004330 ORTHO05D005182 3.1e-112 410.2 253 80.6
MBI16_g41537_MAGBIO Magnolia biondii HOM05D004330 ORTHO05D005182 2.7e-111 407.1 233 84.5
HPP92_006235 Vanilla planifolia HOM05D004330 ORTHO05D005182 1.0e-107 395.2 261 81.6
CDE03G0281 Ceratophyllum demersum HOM05D004330 ORTHO05D005182 2.4e-104 384.0 252 81.7
HPP92_006237 Vanilla planifolia HOM05D004330 ORTHO05D005182 4.1e-80 303.5 182 79.1
SalBow1G7663 Salvia bowleyana HOM05D001091 ORTHO05D001020 1.3e-78 298.5 215 71.6
FvH4_6g22200 Fragaria vesca HOM05D004330 ORTHO05D005182 4.7e-76 290.0 193 82.4
MBI13_g40628_MAGBIO Magnolia biondii HOM05D004330 ORTHO05D005182 7.1e-72 276.2 148 87.8
Rhsim02G0174800 Rhododendron simsii HOM05D004330 ORTHO05D005182 3.6e-68 263.8 195 70.3
CBR_g54936 Chara braunii HOM05D000019 ORTHO05D000353 7.8e-63 246.1 155 70.3
FAN14G0768 Fragaria x ananassa HOM05D004330 ORTHO05D005182 2.5e-61 241.1 192 71.9
Actinidia09912 Actinidia chinensis HOM05D004330 ORTHO05D005182 1.2e-55 222.2 164 72.0
Oeu028617.1 Olea europaea HOM05D004330 ORTHO05D005182 1.1e-53 215.7 170 64.1
QL04p036179 Quercus lobata HOM05D004330 ORTHO05D037441 3.3e-53 214.2 180 68.3
QL09p008022 Quercus lobata HOM05D004330 ORTHO05D005182 6.2e-52 209.9 214 57.9
Nitab4.5_0006062g0030 Nicotiana tabacum HOM05D004330 ORTHO05D005182 1.7e-49 201.8 122 84.4
Cfa027264 Carpinus fangiana HOM05D004330 ORTHO05D005182 1.4e-48 198.7 488 28.3
Hund19535 Selenicereus undatus HOM05D004330 ORTHO05D005182 9.3e-48 196.1 114 88.6
HanXRQChr10g0312231 Helianthus annuus HOM05D004330 ORTHO05D005182 4.8e-44 183.7 105 85.7
Rhsim02G0174700 Rhododendron simsii HOM05D004330 ORTHO05D005182 7.1e-40 169.9 111 83.8
SEGI_19884 Sequoiadendron giganteum HOM05D004330 ORTHO05D005182 4.3e-37 160.6 111 74.8
C06p46260 Brassica napus HOM05D004330 ORTHO05D005182 3.0e-30 137.9 100 70.0
C06p46170 Brassica napus HOM05D004330 ORTHO05D005182 1.3e-28 132.5 100 68.0
C06p46210 Brassica napus HOM05D004330 ORTHO05D005182 1.3e-28 132.5 100 68.0
CARHR152420 Cardamine hirsuta HOM05D004330 ORTHO05D005182 8.2e-28 129.8 151 53.0
Haze_14000 Corylus avellana HOM05D004330 ORTHO05D005182 6.9e-27 126.7 73 87.7
MBI13_g40627_MAGBIO Magnolia biondii HOM05D004330 ORTHO05D005182 2.9e-25 121.3 88 70.5
COL.COLO4_23503 Corchorus olitorius HOM05D004330 ORTHO05D005182 2.1e-23 115.2 75 80.0
CARHR064590 Cardamine hirsuta HOM05D004330 ORTHO05D005182 1.0e-22 112.8 119 53.8
Zm00001eb371470 Zea mays HOM05D003702 ORTHO05D004653 6.7e-22 110.2 62 83.9
HPP92_006236 Vanilla planifolia HOM05D004330 ORTHO05D005182 9.7e-21 106.3 57 87.7
Zm00001eb294100 Zea mays HOM05D003702 ORTHO05D004653 1.3e-20 105.9 77 70.1
EL10Ac2g03252 Beta vulgaris HOM05D004330 ORTHO05D005182 8.2e-20 103.2 69 68.1
Zm00001eb378040 Zea mays HOM05D004330 ORTHO05D000629 1.4e-19 102.4 59 83.1
HPP92_006372 Vanilla planifolia HOM05D004330 ORTHO05D005182 3.8e-17 94.4 94 54.3
EL10Ac2g03375 Beta vulgaris HOM05D015602 ORTHO05D006373 1.1e-16 92.8 65 73.8
SGA_v2.0_scaffold123G33447 Striga asiatica HOM05D004330 ORTHO05D005182 4.8e-12 77.4 78 51.3
GSVIVG01018671001 Vitis vinifera HOM05D004330 ORTHO05D005182 4.8e-12 77.4 60 68.3
Haze_02240 Corylus avellana HOM05D000586 ORTHO05D001010 2.4e-11 75.1 50 76.0
COL.COLO4_37492 Corchorus olitorius HOM05D004330 ORTHO05D005182 3.5e-10 71.2 44 81.8
QL05p049490 Quercus lobata HOM05D000205 ORTHO05D037441 3.2e-08 64.7 40 82.5
FAN25G2786 Fragaria x ananassa HOM05D004330 ORTHO05D206697 1.8e-06 58.9 31 83.9


User provided reference genes

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