Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.C00913 Eucalyptus grandis HOM05D004448 ORTHO05D005919 0.0e+00 1167.9 566 100.0
QL02p063021 Quercus lobata HOM05D004448 ORTHO05D005919 3.5e-122 443.0 580 44.5
Haze_25890 Corylus avellana HOM05D004448 ORTHO05D005919 2.6e-117 426.8 564 43.6
Cfa003108 Carpinus fangiana HOM05D004448 ORTHO05D005919 3.2e-115 419.9 564 42.7
GSVIVG01015227001 Vitis vinifera HOM05D004448 ORTHO05D005919 3.3e-112 409.8 569 42.2
Prupe.7G212600 Prunus persica HOM05D004448 ORTHO05D005919 7.4e-112 408.7 478 48.3
CiPaw.03G218000 Carya illinoinensis HOM05D004448 ORTHO05D005919 3.7e-111 406.4 559 42.6
PGR142G4073 Punica granatum HOM05D004448 ORTHO05D005919 6.3e-111 405.6 495 47.3
TWI32G1061 Tripterygium wilfordii HOM05D004448 ORTHO05D005919 4.1e-110 402.9 487 47.0
ClCG03G015750 Citrullus lanatus HOM05D004448 ORTHO05D005919 5.3e-110 402.5 474 48.1
Dinv42301 Davidia involucrata HOM05D004448 ORTHO05D005919 5.3e-110 402.5 585 41.9
RcHm_v2.0_Chr2g0093041 Rosa chinensis HOM05D004448 ORTHO05D005919 1.0e-108 398.3 484 47.3
FvH4_1g07151 Fragaria vesca HOM05D004448 ORTHO05D005919 2.7e-106 390.2 479 47.0
Lj2g0008301 Lotus japonicus HOM05D004448 ORTHO05D005919 7.9e-106 388.7 503 45.3
FAN26G2794 Fragaria x ananassa HOM05D004448 ORTHO05D005919 1.8e-105 387.5 485 45.6
Thecc.09G092200 Theobroma cacao HOM05D004448 ORTHO05D005919 8.7e-105 385.2 614 40.7
FAN26G0987 Fragaria x ananassa HOM05D004448 ORTHO05D005919 3.3e-104 383.3 485 45.8
Duzib168G0645 Durio zibethinus HOM05D004448 ORTHO05D005919 2.8e-103 380.2 577 41.2
Potri.006G150000 Populus trichocarpa HOM05D004448 ORTHO05D005919 4.8e-103 379.4 569 40.9
COL.COLO4_18221 Corchorus olitorius HOM05D004448 ORTHO05D005919 1.8e-102 377.5 489 45.4
FAN23G3053 Fragaria x ananassa HOM05D004448 ORTHO05D005919 2.4e-102 377.1 585 40.2
FAN19G1271 Fragaria x ananassa HOM05D004448 ORTHO05D005919 6.9e-102 375.6 582 40.2
Dinv36750 Davidia involucrata HOM05D004448 ORTHO05D005919 1.5e-101 374.4 588 41.5
CANSAT56G0950 Cannabis sativa HOM05D004448 ORTHO05D005919 7.7e-101 372.1 403 50.1
Phvul.004G171600 Phaseolus vulgaris HOM05D004448 ORTHO05D005919 2.9e-100 370.2 484 44.6
CsaV3_1G040260 Cucumis sativus L. HOM05D004448 ORTHO05D005919 6.5e-100 369.0 469 45.6
Glyma.07G128700 Glycine max HOM05D004448 ORTHO05D005919 5.5e-99 365.9 487 43.1
PGSC0003DMG400033614 Solanum tuberosum HOM05D004448 ORTHO05D005919 9.4e-99 365.2 564 41.3
Nitab4.5_0000713g0030 Nicotiana tabacum HOM05D004448 ORTHO05D005919 1.2e-98 364.8 585 37.8
Gohir.A08G245000 Gossypium hirsutum HOM05D004448 ORTHO05D005919 2.1e-98 364.0 565 41.2
Gohir.D08G265800 Gossypium hirsutum HOM05D004448 ORTHO05D005919 3.6e-98 363.2 566 41.0
Actinidia25266 Actinidia chinensis HOM05D004448 ORTHO05D005919 1.8e-97 360.9 480 44.4
Manes.03G032000 Manihot esculenta HOM05D004448 ORTHO05D005919 3.0e-97 360.1 486 44.4
MELO3C015453.2 Cucumis melo HOM05D004448 ORTHO05D005919 8.8e-97 358.6 478 45.4
Cc06_g11170 Coffea canephora HOM05D004448 ORTHO05D005919 2.6e-96 357.1 606 37.3
CsaV3_UNG066510 Cucumis sativus L. HOM05D004448 ORTHO05D005919 1.7e-95 354.4 462 44.8
Nitab4.5_0000938g0020 Nicotiana tabacum HOM05D004448 ORTHO05D005919 1.7e-95 354.4 506 42.5
Sabra06G0118700 Salix brachista HOM05D004448 ORTHO05D005919 2.2e-95 354.0 479 44.1
Medtr7g090060 Medicago truncatula HOM05D004448 ORTHO05D005919 1.4e-94 351.3 402 48.0
CSS0023607 Camellia sinensis var. sinensis HOM05D004448 ORTHO05D005919 2.4e-94 350.5 483 42.0
EL10Ac8g19309 Beta vulgaris HOM05D004448 ORTHO05D005919 5.9e-93 345.9 475 42.1
Medtr6g092520 Medicago truncatula HOM05D004448 ORTHO05D005919 1.3e-92 344.7 385 48.1
AUR62031324 Chenopodium quinoa HOM05D004448 ORTHO05D005919 2.5e-91 340.5 487 41.1
Hma1.2p1_0663F.1_g198910 Hydrangea macrophylla HOM05D004448 ORTHO05D005919 2.5e-91 340.5 581 37.9
Psat1g049640 Pisum sativum HOM05D004448 ORTHO05D005919 3.2e-91 340.1 399 46.1
RcHm_v2.0_Chr2g0093031 Rosa chinensis HOM05D004448 ORTHO05D005919 4.2e-91 339.7 556 41.2
Peaxi162Scf00175g00047 Petunia axillaris HOM05D004448 ORTHO05D005919 1.2e-90 338.2 566 39.2
Sopen07g011050 Solanum pennellii HOM05D004448 ORTHO05D005919 3.6e-90 336.7 479 42.0
Nn8g38906 Nelumbo nucifera HOM05D004448 ORTHO05D005919 6.1e-90 335.9 518 39.6
RhsimUnG0189000 Rhododendron simsii HOM05D004448 ORTHO05D005919 6.1e-90 335.9 477 43.6
AUR62027409 Chenopodium quinoa HOM05D004448 ORTHO05D005919 1.4e-89 334.7 482 41.1
Solyc07g021550.3 Solanum lycopersicum HOM05D004448 ORTHO05D005919 1.4e-89 334.7 480 42.3
Gohir.D08G266000 Gossypium hirsutum HOM05D004448 ORTHO05D005919 5.2e-89 332.8 392 47.2
VMungo0464G0625 Vigna mungo HOM05D005189 ORTHO05D006093 1.1e-88 331.6 387 47.0
Rhsim05G0022900 Rhododendron simsii HOM05D004448 ORTHO05D005919 3.3e-88 330.1 522 40.2
arahy.Tifrunner.gnm1.ann1.6Q96ZG Arachis hypogaea HOM05D004448 ORTHO05D005919 1.1e-86 325.1 387 46.0
arahy.Tifrunner.gnm1.ann1.LLR3FQ Arachis hypogaea HOM05D004448 ORTHO05D005919 3.1e-86 323.6 387 46.3
PSO210G3334 Papaver somniferum HOM05D004448 ORTHO05D005919 2.0e-85 320.9 511 38.6
Ah.14g085380 Amaranthus hybridus HOM05D004448 ORTHO05D005919 3.5e-85 320.1 478 40.0
vmacro17218 Vaccinium macrocarpon HOM05D004448 ORTHO05D005919 3.5e-85 320.1 462 41.8
vmacro22686 Vaccinium macrocarpon HOM05D004448 ORTHO05D005919 7.7e-85 318.9 462 41.8
Ciclev10010615m.g Citrus clementina HOM05D004448 ORTHO05D005919 7.2e-83 312.4 553 37.8
PSO210G5509 Papaver somniferum HOM05D004448 ORTHO05D005919 1.2e-82 311.6 508 38.8
Lsat_1_v5_gn_5_145680 Lactuca sativa HOM05D004448 ORTHO05D005919 1.6e-82 311.2 400 45.5
Hund06702 Selenicereus undatus HOM05D004448 ORTHO05D005919 4.0e-81 306.6 406 42.9
Oeu024590.1 Olea europaea HOM05D004448 ORTHO05D005919 6.7e-81 305.8 387 45.7
Sc18g0001910 Simmondsia chinensis HOM05D004448 ORTHO05D005919 2.6e-80 303.9 392 43.6
MBI08_g34934_MAGBIO Magnolia biondii HOM05D004448 ORTHO05D005919 3.1e-78 297.0 388 42.5
Aa31LG3G12720 Aethionema arabicum HOM05D004448 ORTHO05D005919 7.0e-78 295.8 567 33.9
Rhsim03G0233500 Rhododendron simsii HOM05D004448 ORTHO05D005919 7.0e-78 295.8 579 35.9
Nitab4.5_0004087g0010 Nicotiana tabacum HOM05D004448 ORTHO05D005919 9.1e-78 295.4 400 42.5
Cpa.g.sc7.238 Carica papaya HOM05D004448 ORTHO05D005919 1.2e-77 295.0 316 48.7
AT5G56780 Arabidopsis thaliana HOM05D004448 ORTHO05D005919 2.0e-77 294.3 490 39.4
BcaB08g36059 Brassica carinata HOM05D004448 ORTHO05D005919 4.5e-77 293.1 487 38.6
Duzib150G0429 Durio zibethinus HOM05D004448 ORTHO05D005919 4.5e-77 293.1 594 35.5
Sp6g18520 Schrenkiella parvula HOM05D004448 ORTHO05D005919 7.7e-77 292.4 472 38.6
Ciclev10008074m.g Citrus clementina HOM05D004448 ORTHO05D005919 8.5e-76 288.9 558 35.1
Gohir.A08G244900 Gossypium hirsutum HOM05D004448 ORTHO05D005919 1.5e-75 288.1 556 37.9
THA.LOC104813490 Tarenaya hassleriana HOM05D004448 ORTHO05D005919 3.2e-75 287.0 492 38.2
Carub.0008s1726 Capsella rubella HOM05D004448 ORTHO05D005919 5.5e-75 286.2 486 37.2
DCAR_024685 Daucus carota HOM05D004448 ORTHO05D005919 2.1e-74 284.3 461 36.9
CDE09G0006 Ceratophyllum demersum HOM05D004448 ORTHO05D005919 2.7e-74 283.9 475 39.2
SalBow6G4094 Salvia bowleyana HOM05D004448 ORTHO05D005919 2.7e-74 283.9 402 40.5
Atru.chr7.1561 Acer truncatum HOM05D004448 ORTHO05D005919 1.4e-73 281.6 416 40.9
BcaC04g20054 Brassica carinata HOM05D004448 ORTHO05D005919 1.8e-73 281.2 492 37.0
BolC9t57684H Brassica oleracea HOM05D004448 ORTHO05D005919 6.8e-73 279.3 491 36.7
BcaC02g12506 Brassica carinata HOM05D004448 ORTHO05D005919 1.2e-72 278.5 463 36.9
C09p48340 Brassica napus HOM05D004448 ORTHO05D005919 1.5e-72 278.1 492 37.0
BraA10t43502Z Brassica rapa HOM05D004448 ORTHO05D005919 1.5e-72 278.1 489 36.6
A10p14110 Brassica napus HOM05D004448 ORTHO05D005919 2.6e-72 277.3 489 36.8
Thhalv10015325m.g Eutrema salsugineum HOM05D004448 ORTHO05D005919 4.4e-72 276.6 484 38.2
BraA05t19157Z Brassica rapa HOM05D004448 ORTHO05D005919 7.5e-72 275.8 462 37.0
C04p01820 Brassica napus HOM05D004448 ORTHO05D005919 1.3e-71 275.0 465 37.2
Aqoxy5G03492 Aquilegia oxysepala HOM05D004448 ORTHO05D005919 1.7e-71 274.6 426 39.7
HanXRQChr12g0354731 Helianthus annuus HOM05D004448 ORTHO05D005919 4.8e-71 273.1 394 40.9
Ca_08398_v3 Cicer arietinum L. HOM05D004448 ORTHO05D005919 6.3e-71 272.7 267 51.7
AL8G32620 Arabidopsis lyrata HOM05D004448 ORTHO05D005919 1.4e-70 271.6 534 35.2
BcaC02g12705 Brassica carinata HOM05D004448 ORTHO05D005919 9.1e-70 268.9 464 37.3
ECA234G2909 Erigeron canadensis HOM05D004448 ORTHO05D005919 9.1e-70 268.9 306 47.1
Aa31LG2G21230 Aethionema arabicum HOM05D004448 ORTHO05D005919 3.5e-69 266.9 486 35.4
CARHR270530 Cardamine hirsuta HOM05D004448 ORTHO05D005919 5.5e-67 259.6 455 37.1
CSS0050052 Camellia sinensis var. sinensis HOM05D004448 ORTHO05D005919 1.6e-66 258.1 538 33.3
Migut.J00591 Erythranthe guttata HOM05D004448 ORTHO05D005919 2.2e-63 247.7 315 44.1
unitig_0.g218 Utricularia gibba HOM05D004448 ORTHO05D005919 3.7e-63 246.9 399 39.6
Mapoly0070s0093 Marchantia polymorpha HOM05D004448 ORTHO05D005919 2.4e-62 244.2 427 36.8
A05p01610 Brassica napus HOM05D004448 ORTHO05D005919 6.6e-60 236.1 299 43.1
Zm00001eb325970 Zea mays HOM05D004448 ORTHO05D005919 2.5e-59 234.2 543 33.1
FvH4_1g07150 Fragaria vesca HOM05D004448 ORTHO05D005919 1.0e-57 228.8 449 35.2
vmacro06280 Vaccinium macrocarpon HOM05D004448 ORTHO05D005919 5.2e-57 226.5 320 43.8
HPP92_006937 Vanilla planifolia HOM05D004448 ORTHO05D005919 7.5e-56 222.6 302 42.4
Os07g0586700 Oryza sativa ssp. japonica HOM05D004448 ORTHO05D005919 1.4e-54 218.4 472 34.3
ATR0705G152 Amborella trichopoda HOM05D004448 ORTHO05D005919 9.2e-54 215.7 314 41.4
Sed0012121 Sechium edule HOM05D004448 ORTHO05D005919 6.6e-52 209.5 339 39.2
MD02G1076000 Malus domestica HOM05D004448 ORTHO05D005919 1.5e-51 208.4 151 65.6
Pp3c3_34250 Physcomitrium patens HOM05D004448 ORTHO05D005919 8.0e-50 202.6 437 33.2
CBR_g29538 Chara braunii HOM05D004448 ORTHO05D005919 5.2e-49 199.9 517 31.7
AagrBONN_evm.TU.Sc2ySwM_117.4075 Anthoceros agrestis HOM05D004448 ORTHO05D005919 1.2e-48 198.7 409 33.5
Gohir.A08G245100 Gossypium hirsutum HOM05D004448 ORTHO05D005919 3.7e-47 193.7 374 36.6
TPR.G40396 Trifolium pratense HOM05D004448 ORTHO05D005919 1.4e-46 191.8 257 44.7
Pp3c4_9790 Physcomitrium patens HOM05D004448 ORTHO05D005919 1.9e-46 191.4 349 34.7
SMO139G0129 Selaginella moellendorffii HOM05D006068 ORTHO05D007579 1.9e-43 181.4 339 36.3
Pp3c27_3080 Physcomitrium patens HOM05D004448 ORTHO05D005919 7.3e-43 179.5 571 30.1
Rhsim03G0233900 Rhododendron simsii HOM05D004448 ORTHO05D005919 7.3e-43 179.5 183 53.6
Gorai.N024000 Gossypium raimondii HOM05D004448 ORTHO05D005919 9.5e-43 179.1 409 32.8
TPR.G35500 Trifolium pratense HOM05D004448 ORTHO05D005919 3.6e-42 177.2 165 53.9
Pp3c16_1200 Physcomitrium patens HOM05D004448 ORTHO05D005919 2.0e-40 171.4 579 28.3
CANSAT56G3488 Cannabis sativa HOM05D004448 ORTHO05D005919 3.7e-39 167.2 246 40.7
CARHR270520 Cardamine hirsuta HOM05D004448 ORTHO05D005919 8.3e-39 166.0 317 34.7
SGA_v2.0_scaffold62G21589 Striga asiatica HOM05D004448 ORTHO05D005919 2.1e-37 161.4 146 54.1
RhsimUnG0145000 Rhododendron simsii HOM05D004448 ORTHO05D005919 1.1e-33 149.1 250 38.8
TPR.G35590 Trifolium pratense HOM05D004448 ORTHO05D005919 2.3e-33 147.9 106 64.2
Lalb_Chr24g0393831 Lupinus albus HOM05D004448 ORTHO05D005919 4.0e-33 147.1 151 48.3
SMO157G0009 Selaginella moellendorffii HOM05D006068 ORTHO05D007579 1.3e-31 142.1 295 35.9
Pp3c15_21310 Physcomitrium patens HOM05D004448 ORTHO05D005919 6.0e-29 133.3 469 26.9
RhsimUnG0144800 Rhododendron simsii HOM05D004448 ORTHO05D005919 1.5e-27 128.6 315 31.1
Rhsim05G0023200 Rhododendron simsii HOM05D004448 ORTHO05D005919 2.8e-26 124.4 308 30.5
MD02G1075500 Malus domestica HOM05D004448 ORTHO05D005919 6.2e-26 123.2 238 36.1
AT5G56770 Arabidopsis thaliana HOM05D004448 ORTHO05D005919 5.2e-25 120.2 182 37.9
AL8G32610 Arabidopsis lyrata HOM05D004448 ORTHO05D005919 9.0e-25 119.4 171 38.0
Atru.chr7.1554 Acer truncatum HOM05D004448 ORTHO05D005919 2.0e-24 118.2 270 33.0
Gohir.D08G265900 Gossypium hirsutum HOM05D004448 ORTHO05D005919 5.8e-24 116.7 409 27.4
Atru.chr7.1555 Acer truncatum HOM05D004448 ORTHO05D005919 2.9e-23 114.4 94 58.5
Medtr6g092500 Medicago truncatula HOM05D004448 ORTHO05D005919 3.5e-21 107.5 118 47.5
SalBow1G6253 Salvia bowleyana HOM05D004448 ORTHO05D005919 3.0e-20 104.4 141 39.7
AT4G26170 Arabidopsis thaliana HOM05D004448 ORTHO05D015948 2.8e-18 97.8 251 32.7
AL7G26800 Arabidopsis lyrata HOM05D004448 ORTHO05D015948 3.6e-18 97.4 291 28.9
Carub.0008s1725 Capsella rubella HOM05D004448 ORTHO05D005919 4.8e-18 97.1 186 32.8
RhsimUnG0032400 Rhododendron simsii HOM05D004448 ORTHO05D005919 8.1e-18 96.3 306 28.1
CARHR233700 Cardamine hirsuta HOM05D004448 ORTHO05D015948 1.1e-17 95.9 410 24.9
Glyma.01G003300 Glycine max HOM05D004448 ORTHO05D005919 6.9e-17 93.2 100 51.0
Pp3c5_7060 Physcomitrium patens HOM05D004448 ORTHO05D005919 2.2e-15 88.2 379 26.9
Aa31LG3G540 Aethionema arabicum HOM05D001256 ORTHO05D001141 5.4e-14 83.6 226 29.6
Medtr6g092480 Medicago truncatula HOM05D012533 ORTHO05D264910 9.3e-14 82.8 70 48.6
BraA01t01701Z Brassica rapa HOM05D004448 ORTHO05D015948 3.9e-12 77.4 300 24.0
FvH4_1g07231 Fragaria vesca HOM05D004448 ORTHO05D005919 3.9e-12 77.4 113 44.2
Hma1.2p1_0024F.1_g016070 Hydrangea macrophylla HOM05D004448 ORTHO05D005919 1.1e-11 75.9 90 43.3
CBR_g20264 Chara braunii HOM05D000505 ORTHO05D000301 9.6e-11 72.8 137 35.8
Sp7g24190 Schrenkiella parvula HOM05D004448 ORTHO05D015948 2.1e-10 71.6 221 27.1
Pp3c9_23170 Physcomitrium patens HOM05D004448 ORTHO05D005919 2.8e-10 71.2 264 28.4
Thhalv10025245m.g Eutrema salsugineum HOM05D004448 ORTHO05D015948 6.2e-10 70.1 126 36.5
Carub.0007s1478 Capsella rubella HOM05D004448 ORTHO05D015948 4.9e-07 60.5 325 22.5


User provided reference genes

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