Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.C00825 Eucalyptus grandis HOM05D001514 ORTHO05D005209 1.6e-123 446.0 223 100.0
COL.COLO4_18112 Corchorus olitorius HOM05D001514 ORTHO05D005209 1.7e-104 382.9 223 82.5
PGR142G1966 Punica granatum HOM05D001514 ORTHO05D005209 1.4e-103 379.8 223 84.8
Thecc.09G079100 Theobroma cacao HOM05D001514 ORTHO05D005209 5.5e-103 377.9 223 80.3
Potri.006G143400 Populus trichocarpa HOM05D001514 ORTHO05D005209 3.6e-102 375.2 223 78.9
Gohir.A13G191300 Gossypium hirsutum HOM05D001514 ORTHO05D005209 2.3e-101 372.5 223 81.2
Atru.chr7.1692 Acer truncatum HOM05D001514 ORTHO05D005209 5.1e-101 371.3 224 77.7
Haze_10270 Corylus avellana HOM05D001514 ORTHO05D005209 5.1e-101 371.3 223 78.5
CSS0005970 Camellia sinensis var. sinensis HOM05D001514 ORTHO05D005209 2.0e-100 369.4 223 78.5
Duzib168G1760 Durio zibethinus HOM05D001514 ORTHO05D005209 2.0e-100 369.4 225 79.6
Gohir.D13G196700 Gossypium hirsutum HOM05D001514 ORTHO05D005209 2.2e-99 365.9 223 80.7
Manes.03G199800 Manihot esculenta HOM05D001514 ORTHO05D005209 3.7e-99 365.2 223 77.6
TAR626G0523 Trochodendron aralioides HOM05D001514 ORTHO05D005209 3.7e-99 365.2 223 79.4
TAR626G1304 Trochodendron aralioides HOM05D001514 ORTHO05D005209 3.7e-99 365.2 223 79.4
Ciclev10012695m.g Citrus clementina HOM05D001514 ORTHO05D005209 4.8e-99 364.8 223 77.6
Cpa.g.sc280.6 Carica papaya HOM05D001514 ORTHO05D005209 1.1e-98 363.6 223 78.9
Gorai.013G225400 Gossypium raimondii HOM05D001514 ORTHO05D005209 1.1e-98 363.6 223 80.3
TWI60G0494 Tripterygium wilfordii HOM05D001514 ORTHO05D005209 1.1e-98 363.6 223 76.7
TAR383G0900 Trochodendron aralioides HOM05D001514 ORTHO05D005209 1.1e-98 363.6 212 79.7
Nn8g38685 Nelumbo nucifera HOM05D001514 ORTHO05D005209 1.8e-98 362.8 215 79.1
CiPaw.03G207800 Carya illinoinensis HOM05D001514 ORTHO05D005209 4.1e-98 361.7 223 75.3
GSVIVG01015097001 Vitis vinifera HOM05D001514 ORTHO05D005209 4.1e-98 361.7 224 77.2
Prupe.7G201200 Prunus persica HOM05D001514 ORTHO05D005209 9.1e-98 360.5 217 77.0
QL11p000460 Quercus lobata HOM05D001514 ORTHO05D005209 9.1e-98 360.5 222 76.1
Cc06_g12020 Coffea canephora HOM05D001514 ORTHO05D005209 3.5e-97 358.6 223 74.9
MD15G1215700 Malus domestica HOM05D001514 ORTHO05D005209 1.7e-96 356.3 223 74.9
Dinv42376 Davidia involucrata HOM05D001514 ORTHO05D005209 2.9e-96 355.5 219 75.3
MD15G1215800 Malus domestica HOM05D001514 ORTHO05D005209 5.0e-96 354.8 224 74.6
Hma1.2p1_0928F.1_g237710 Hydrangea macrophylla HOM05D001514 ORTHO05D005209 6.5e-96 354.4 217 76.0
Nitab4.5_0011363g0010 Nicotiana tabacum HOM05D001514 ORTHO05D005209 6.5e-96 354.4 222 75.2
Haze_25985 Corylus avellana HOM05D001514 ORTHO05D005209 1.6e-94 349.7 260 66.9
Haze_25993 Corylus avellana HOM05D001514 ORTHO05D005209 1.6e-94 349.7 260 66.9
CsaV3_2G001190 Cucumis sativus L. HOM05D001514 ORTHO05D005209 2.1e-94 349.4 224 75.0
Sabra06G0113700 Salix brachista HOM05D001514 ORTHO05D005209 3.6e-94 348.6 251 68.9
Solyc12g009090.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 8.0e-94 347.4 224 75.0
MBI13_g11335_MAGBIO Magnolia biondii HOM05D001514 ORTHO05D005209 1.8e-93 346.3 223 74.4
PGSC0003DMG400000323 Solanum tuberosum HOM05D001514 ORTHO05D005209 1.8e-93 346.3 224 74.6
Sopen12g004040 Solanum pennellii HOM05D001514 ORTHO05D005209 2.3e-93 345.9 224 74.6
AUR62025186 Chenopodium quinoa HOM05D001514 ORTHO05D005209 6.7e-93 344.4 223 70.0
Sed0009954 Sechium edule HOM05D001514 ORTHO05D005209 2.0e-92 342.8 218 74.8
THA.LOC104808891 Tarenaya hassleriana HOM05D001514 ORTHO05D005209 2.0e-92 342.8 223 74.0
Sp4g11040 Schrenkiella parvula HOM05D001514 ORTHO05D005209 3.3e-92 342.0 217 74.7
EL10Ac8g19111 Beta vulgaris HOM05D001514 ORTHO05D005209 5.7e-92 341.3 223 69.5
Aa31sc437G10 Aethionema arabicum HOM05D001514 ORTHO05D005209 9.7e-92 340.5 217 74.2
Thhalv10002659m.g Eutrema salsugineum HOM05D001514 ORTHO05D005209 1.3e-91 340.1 217 74.2
AL4G21890 Arabidopsis lyrata HOM05D001514 ORTHO05D005209 1.7e-91 339.7 217 73.7
ClCG11G001470 Citrullus lanatus HOM05D001514 ORTHO05D005209 4.8e-91 338.2 236 70.8
HanXRQChr09g0237811 Helianthus annuus HOM05D001514 ORTHO05D005209 4.8e-91 338.2 218 74.8
Lsat_1_v5_gn_7_35041 Lactuca sativa HOM05D001514 ORTHO05D005209 8.2e-91 337.4 217 73.7
SGA_v2.0_scaffold97G29140 Striga asiatica HOM05D001514 ORTHO05D005209 8.2e-91 337.4 223 70.4
MSTRG.6002 Avicennia marina HOM05D001514 ORTHO05D005209 2.4e-90 335.9 223 70.9
BcaB02g10157 Brassica carinata HOM05D001514 ORTHO05D005209 3.1e-90 335.5 217 72.4
Nitab4.5_0000073g0250 Nicotiana tabacum HOM05D001514 ORTHO05D005209 3.1e-90 335.5 225 72.4
ECA233G5402 Erigeron canadensis HOM05D001514 ORTHO05D005209 5.3e-90 334.7 218 72.9
AT2G28230 Arabidopsis thaliana HOM05D001514 ORTHO05D005209 7.0e-90 334.3 217 72.4
FvH4_1g08420 Fragaria vesca HOM05D001514 ORTHO05D005209 9.1e-90 334.0 216 71.3
SalBow6G1458 Salvia bowleyana HOM05D001514 ORTHO05D005209 9.1e-90 334.0 223 69.5
Carub.0004s0911 Capsella rubella HOM05D001514 ORTHO05D005209 1.6e-89 333.2 217 71.9
Hund08725 Selenicereus undatus HOM05D001514 ORTHO05D005209 5.9e-89 331.3 212 69.8
BcaC02g10956 Brassica carinata HOM05D001514 ORTHO05D005209 1.0e-88 330.5 217 71.4
C04p23290 Brassica napus HOM05D001514 ORTHO05D005209 1.0e-88 330.5 217 71.4
RcHm_v2.0_Chr2g0094521 Rosa chinensis HOM05D001514 ORTHO05D005209 2.9e-88 328.9 215 73.0
A07p18760 Brassica napus HOM05D001514 ORTHO05D005209 1.9e-87 326.2 215 70.2
Migut.J00937 Erythranthe guttata HOM05D001514 ORTHO05D005209 1.9e-87 326.2 221 68.8
Lj4g0013364 Lotus japonicus HOM05D001514 ORTHO05D005209 3.2e-87 325.5 215 70.7
MELO3C004649.2 Cucumis melo HOM05D001514 ORTHO05D005209 9.4e-87 323.9 223 71.7
Carub.0004s0910 Capsella rubella HOM05D001514 ORTHO05D005209 1.2e-86 323.6 216 69.0
Lj7A685T53 Lonicera japonica HOM05D001514 ORTHO05D005209 1.2e-86 323.6 265 60.8
SalBow3G1655 Salvia bowleyana HOM05D001514 ORTHO05D005209 6.1e-86 321.2 218 68.8
THA.LOC104826585 Tarenaya hassleriana HOM05D001514 ORTHO05D005209 6.1e-86 321.2 237 66.2
ATR0598G338 Amborella trichopoda HOM05D001514 ORTHO05D005209 2.3e-85 319.3 215 68.8
PSO210G4222 Papaver somniferum HOM05D001514 ORTHO05D005209 3.0e-85 318.9 225 66.7
PSO386G0176 Papaver somniferum HOM05D001514 ORTHO05D005209 4.0e-85 318.5 225 67.1
BolC4t23831H Brassica oleracea HOM05D001514 ORTHO05D005209 8.8e-85 317.4 212 70.8
Nitab4.5_0001866g0080 Nicotiana tabacum HOM05D001514 ORTHO05D005209 1.2e-84 317.0 215 71.2
BraA07t29585Z Brassica rapa HOM05D001514 ORTHO05D005209 5.7e-84 314.7 210 70.0
AUR62028988 Chenopodium quinoa HOM05D001514 ORTHO05D005209 9.8e-84 313.9 200 72.0
vmacro06328 Vaccinium macrocarpon HOM05D001514 ORTHO05D005209 6.3e-83 311.2 252 63.1
CDE05G2440 Ceratophyllum demersum HOM05D001514 ORTHO05D005209 1.1e-82 310.5 217 65.9
Psat4g016720 Pisum sativum HOM05D001514 ORTHO05D005209 1.1e-82 310.5 216 66.2
Solyc05g041170.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 5.4e-82 308.1 221 62.0
AT4G09070 Arabidopsis thaliana HOM05D001514 ORTHO05D005209 7.0e-82 307.8 216 65.7
HPP92_009229 Vanilla planifolia HOM05D001514 ORTHO05D005209 7.0e-82 307.8 216 65.3
Medtr4g125510 Medicago truncatula HOM05D001514 ORTHO05D005209 1.2e-81 307.0 223 66.4
Ca_21314_v3 Cicer arietinum L. HOM05D001514 ORTHO05D005209 2.7e-81 305.8 215 64.7
Glyma.17G050300 Glycine max HOM05D001514 ORTHO05D005209 1.7e-80 303.1 215 65.6
Phvul.003G131900 Phaseolus vulgaris HOM05D001514 ORTHO05D005209 2.2e-80 302.8 215 65.6
TPR.G9427 Trifolium pratense HOM05D001514 ORTHO05D005209 2.2e-80 302.8 217 65.0
Glyma.13G109300 Glycine max HOM05D001514 ORTHO05D005209 8.5e-80 300.8 215 65.1
arahy.Tifrunner.gnm1.ann1.0DN5L0 Arachis hypogaea HOM05D001514 ORTHO05D005209 1.9e-79 299.7 215 63.3
arahy.Tifrunner.gnm1.ann1.0TW07M Arachis hypogaea HOM05D001514 ORTHO05D005209 1.9e-79 299.7 215 63.3
arahy.Tifrunner.gnm1.ann1.I7BKR8 Arachis hypogaea HOM05D001514 ORTHO05D005209 1.9e-79 299.7 215 63.3
Medtr2g063927 Medicago truncatula HOM05D001514 ORTHO05D005209 1.6e-78 296.6 215 64.2
Thhalv10017586m.g Eutrema salsugineum HOM05D001514 ORTHO05D005209 3.0e-77 292.4 217 65.9
Aqoxy7G01057 Aquilegia oxysepala HOM05D001514 ORTHO05D005209 8.8e-77 290.8 217 63.1
Lalb_Chr07g0181101 Lupinus albus HOM05D001514 ORTHO05D005209 1.2e-76 290.4 217 59.4
Solyc10g054950.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 3.4e-76 288.9 215 64.7
Solyc10g049510.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 9.8e-76 287.3 216 62.5
Aqoxy7G01056 Aquilegia oxysepala HOM05D001514 ORTHO05D005209 1.7e-75 286.6 217 60.4
VMungo1215G3125 Vigna mungo HOM05D001514 ORTHO05D005209 1.1e-74 283.9 202 64.4
Peaxi162Scf00928g00034 Petunia axillaris HOM05D001514 ORTHO05D005209 7.7e-73 277.7 218 63.8
Actinidia29922 Actinidia chinensis HOM05D001514 ORTHO05D005209 1.3e-72 276.9 213 64.8
Sabra06G0112300 Salix brachista HOM05D001514 ORTHO05D005209 1.7e-72 276.6 170 77.1
Os09g0443500 Oryza sativa ssp. japonica HOM05D001514 ORTHO05D005209 2.3e-72 276.2 225 56.0
CARHR121150 Cardamine hirsuta HOM05D001514 ORTHO05D005209 4.3e-71 271.9 217 60.8
Zm00001eb314270 Zea mays HOM05D001514 ORTHO05D005209 1.8e-69 266.5 218 55.0
Carub.0006s2765 Capsella rubella HOM05D001514 ORTHO05D005209 3.0e-69 265.8 216 54.2
Actinidia38471 Actinidia chinensis HOM05D001514 ORTHO05D005209 6.4e-67 258.1 224 59.8
CANSAT11G2059 Cannabis sativa HOM05D001514 ORTHO05D005209 1.8e-66 256.5 170 70.0
Rhsim03G0229200 Rhododendron simsii HOM05D001514 ORTHO05D005209 9.2e-66 254.2 173 72.3
Solyc10g055100.1 Solanum lycopersicum HOM05D001514 ORTHO05D005209 9.2e-66 254.2 215 58.1
Sc08g0008840 Simmondsia chinensis HOM05D001514 ORTHO05D005209 5.9e-65 251.5 168 70.8
Sc08g0009330 Simmondsia chinensis HOM05D001514 ORTHO05D005209 5.9e-65 251.5 168 70.8
PGSC0003DMG400027872 Solanum tuberosum HOM05D001514 ORTHO05D005209 1.0e-64 250.8 189 63.0
FAN26G1993 Fragaria x ananassa HOM05D001514 ORTHO05D005209 8.6e-64 247.7 167 69.5
Mapoly0097s0017 Marchantia polymorpha HOM05D001514 ORTHO05D005209 1.9e-63 246.5 213 51.2
Solyc10g055160.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 2.5e-63 246.1 185 62.7
Solyc10g055020.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 3.3e-63 245.7 221 56.6
SMO141G0192 Selaginella moellendorffii HOM05D001514 ORTHO05D005209 2.3e-61 239.6 210 51.4
FAN26G0729 Fragaria x ananassa HOM05D001514 ORTHO05D005209 3.4e-60 235.7 187 62.0
Solyc10g054980.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 3.4e-60 235.7 210 56.7
DCAR_024739 Daucus carota HOM05D001514 ORTHO05D005209 1.2e-57 227.3 141 74.5
Nitab4.5_0000073g0220 Nicotiana tabacum HOM05D001514 ORTHO05D005209 1.1e-55 220.7 136 75.7
PGSC0003DMG400024425 Solanum tuberosum HOM05D001514 ORTHO05D005209 1.1e-55 220.7 169 62.1
Pp3c7_2780 Physcomitrium patens HOM05D001514 ORTHO05D005209 9.5e-55 217.6 208 47.6
Psat0s2317g0240 Pisum sativum HOM05D001514 ORTHO05D005209 1.6e-54 216.9 213 51.2
DCAR_026438 Daucus carota HOM05D001514 ORTHO05D005209 8.1e-54 214.5 142 71.1
CAN.G1963.7 Capsicum annuum HOM05D001514 ORTHO05D005209 1.1e-53 214.2 164 64.0
Sopen10g024920 Solanum pennellii HOM05D001514 ORTHO05D005209 1.5e-52 210.3 171 60.8
CAN.G2532.1 Capsicum annuum HOM05D001514 ORTHO05D005209 3.4e-52 209.1 166 60.2
CAN.G299.3 Capsicum annuum HOM05D001514 ORTHO05D005209 4.4e-52 208.8 127 81.1
Psat0s4474g0080 Pisum sativum HOM05D001514 ORTHO05D005209 4.9e-51 205.3 214 47.2
AagrBONN_evm.TU.Sc2ySwM_344.5098 Anthoceros agrestis HOM05D001514 ORTHO05D005209 6.4e-51 204.9 191 48.7
unitig_749.g14240 Utricularia gibba HOM05D001514 ORTHO05D005209 2.4e-50 203.0 151 65.6
PGSC0003DMG400040125 Solanum tuberosum HOM05D001514 ORTHO05D005209 4.6e-49 198.7 215 48.4
CBR_g11153 Chara braunii HOM05D001514 ORTHO05D005209 3.9e-48 195.7 220 41.4
Solyc10g055010.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 1.1e-47 194.1 143 63.6
Solyc10g055070.1 Solanum lycopersicum HOM05D001514 ORTHO05D005209 4.3e-47 192.2 166 57.8
CAN.G1774.14 Capsicum annuum HOM05D001514 ORTHO05D005209 2.3e-45 186.4 144 63.9
PGSC0003DMG400003348 Solanum tuberosum HOM05D001514 ORTHO05D005209 5.8e-44 181.8 131 67.2
Manes.15G009400 Manihot esculenta HOM05D001514 ORTHO05D005209 1.4e-42 177.2 128 70.3
Sopen10g024960 Solanum pennellii HOM05D001514 ORTHO05D005209 3.5e-41 172.6 123 68.3
MD02G1088400 Malus domestica HOM05D001514 ORTHO05D005209 1.7e-40 170.2 173 52.0
Solyc10g055150.1 Solanum lycopersicum HOM05D001514 ORTHO05D005209 3.6e-38 162.5 136 59.6
Solyc10g049550.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 1.1e-37 161.0 133 57.9
Solyc10g055130.2 Solanum lycopersicum HOM05D001514 ORTHO05D005209 1.4e-37 160.6 114 68.4
Sopen10g024890 Solanum pennellii HOM05D001514 ORTHO05D005209 2.1e-33 146.7 101 69.3
Solyc10g055040.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 9.6e-23 111.3 143 42.7
Sopen10g024880 Solanum pennellii HOM05D000004 ORTHO05D000002 9.6e-23 111.3 90 63.3
DCAR_024738 Daucus carota HOM05D001514 ORTHO05D005209 6.2e-22 108.6 75 68.0
Potri.005G126902 Populus trichocarpa HOM05D001514 ORTHO05D005209 8.1e-22 108.2 83 66.3
Sopen12g011120 Solanum pennellii HOM05D001514 ORTHO05D005209 5.3e-21 105.5 81 60.5
Rhsim03G0228900 Rhododendron simsii HOM05D001514 ORTHO05D005209 4.2e-18 95.9 58 70.7
Oeu055661.2 Olea europaea HOM05D001514 ORTHO05D005209 1.3e-16 90.9 52 73.1
AT2G28020 Arabidopsis thaliana HOM05D001514 ORTHO05D005209 3.9e-16 89.4 69 63.8
CAN.G1963.4 Capsicum annuum HOM05D001514 ORTHO05D005209 1.9e-15 87.0 66 53.0
Solyc12g062270.1 Solanum lycopersicum HOM05D001514 ORTHO05D005209 1.3e-14 84.3 64 65.6
ECA233G2563 Erigeron canadensis HOM05D000517 ORTHO05D000751 3.2e-10 69.7 97 40.2
BcaC07g40291 Brassica carinata HOM05D001514 ORTHO05D005209 3.0e-08 63.2 55 60.0
C08p34050 Brassica napus HOM05D001514 ORTHO05D005209 3.0e-08 63.2 55 60.0
BolC8t51003H Brassica oleracea HOM05D001514 ORTHO05D005209 5.1e-08 62.4 44 70.5
Solyc10g055030.1 Solanum lycopersicum HOM05D001514 ORTHO05D005209 4.8e-06 55.8 49 59.2


User provided reference genes

Program Settings