Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.B03445 Eucalyptus grandis HOM05D001988 ORTHO05D004985 0.0e+00 1468.0 721 100.0
Cfa008981 Carpinus fangiana HOM05D001988 ORTHO05D004985 1.5e-234 816.6 738 59.3
Eucgr.B03444 Eucalyptus grandis HOM05D001988 ORTHO05D004985 6.3e-233 811.2 466 87.8
PGR102G2417 Punica granatum HOM05D001988 ORTHO05D004985 2.1e-228 796.2 738 59.1
QL03p064038 Quercus lobata HOM05D001988 ORTHO05D004985 1.5e-226 790.0 736 58.0
QL03p063402 Quercus lobata HOM05D001988 ORTHO05D004985 5.7e-226 788.1 736 57.9
Prupe.1G174900 Prunus persica HOM05D001988 ORTHO05D004985 1.8e-219 766.5 728 55.9
Haze_12013 Corylus avellana HOM05D001988 ORTHO05D004985 2.7e-215 752.7 865 49.9
Actinidia19875 Actinidia chinensis HOM05D001988 ORTHO05D004985 1.9e-213 746.5 734 54.4
MD04G1025400 Malus domestica HOM05D001988 ORTHO05D004985 6.8e-211 738.0 707 54.7
Cpa.g.sc128.24 Carica papaya HOM05D001988 ORTHO05D004985 2.0e-210 736.5 730 53.4
Ciclev10030768m.g Citrus clementina HOM05D001988 ORTHO05D004985 4.4e-210 735.3 759 53.6
Rhsim12G0063800 Rhododendron simsii HOM05D001988 ORTHO05D004985 1.7e-209 733.4 736 53.1
Manes.01G185700 Manihot esculenta HOM05D001988 ORTHO05D004985 1.1e-208 730.7 744 54.7
CANSAT54G1389 Cannabis sativa HOM05D001988 ORTHO05D004985 1.0e-206 724.2 741 51.6
FAN21G2649 Fragaria x ananassa HOM05D001988 ORTHO05D004985 2.3e-203 713.0 719 53.0
CSS0030030 Camellia sinensis var. sinensis HOM05D001988 ORTHO05D004985 7.5e-202 708.0 734 53.4
CiPaw.05G135300 Carya illinoinensis HOM05D001988 ORTHO05D004985 7.5e-202 708.0 597 61.0
Glyma.11G111300 Glycine max HOM05D001988 ORTHO05D004985 1.3e-201 707.2 745 50.6
GSVIVG01019982001 Vitis vinifera HOM05D001988 ORTHO05D004985 1.7e-201 706.8 717 52.2
FvH4_3g26291 Fragaria vesca HOM05D001988 ORTHO05D004985 3.7e-201 705.7 719 52.4
FAN11G2867 Fragaria x ananassa HOM05D001988 ORTHO05D006298 3.2e-200 702.6 719 52.3
Phvul.011G039300 Phaseolus vulgaris HOM05D001988 ORTHO05D004985 4.1e-200 702.2 744 52.3
Duzib251G0871 Durio zibethinus HOM05D001988 ORTHO05D004985 3.5e-199 699.1 737 51.6
ClCG11G010950 Citrullus lanatus HOM05D001988 ORTHO05D004985 5.9e-199 698.4 760 52.6
Thecc.02G346500 Theobroma cacao HOM05D001988 ORTHO05D004985 1.3e-198 697.2 741 52.1
Gohir.D05G304800 Gossypium hirsutum HOM05D001988 ORTHO05D004985 1.7e-198 696.8 735 51.4
Gorai.009G324500 Gossypium raimondii HOM05D001988 ORTHO05D004985 2.3e-198 696.4 735 51.4
FAN25G3604 Fragaria x ananassa HOM05D001988 ORTHO05D006298 1.1e-197 694.1 711 52.6
VMungo1127G0715 Vigna mungo HOM05D001988 ORTHO05D004985 2.1e-196 689.9 749 50.9
Lj3g0010541 Lotus japonicus HOM05D001988 ORTHO05D004985 5.4e-192 675.2 741 50.5
Sabra10G0129300 Salix brachista HOM05D001988 ORTHO05D004985 8.6e-190 667.9 749 50.9
vmacro01260 Vaccinium macrocarpon HOM05D001988 ORTHO05D004985 8.6e-190 667.9 735 50.6
arahy.Tifrunner.gnm1.ann1.8UN484 Arachis hypogaea HOM05D001988 ORTHO05D004985 4.0e-187 659.1 754 49.9
vmacro01166 Vaccinium macrocarpon HOM05D001988 ORTHO05D004985 8.9e-187 657.9 740 50.0
FAN25G3456 Fragaria x ananassa HOM05D001988 ORTHO05D004985 1.5e-186 657.1 681 52.4
arahy.Tifrunner.gnm1.ann1.41IR6N Arachis hypogaea HOM05D001988 ORTHO05D004985 4.4e-186 655.6 754 49.5
Sed0003814 Sechium edule HOM05D001988 ORTHO05D004985 5.8e-186 655.2 736 50.4
Gohir.A05G183600 Gossypium hirsutum HOM05D001988 ORTHO05D004985 2.2e-185 653.3 735 49.5
Nn4g23157 Nelumbo nucifera HOM05D001988 ORTHO05D004985 8.3e-185 651.4 715 50.5
MELO3C008752.2 Cucumis melo HOM05D001988 ORTHO05D004985 2.7e-183 646.4 750 49.6
TWI53G0339 Tripterygium wilfordii HOM05D001988 ORTHO05D004985 1.3e-182 644.0 710 51.8
arahy.Tifrunner.gnm1.ann1.AY0VQT Arachis hypogaea HOM05D001988 ORTHO05D004985 1.7e-182 643.7 763 48.6
Lj8A318G47 Lonicera japonica HOM05D001988 ORTHO05D004985 5.1e-182 642.1 712 50.1
Ca_20931_v3 Cicer arietinum L. HOM05D001988 ORTHO05D004985 1.9e-181 640.2 750 48.3
Medtr4g057650 Medicago truncatula HOM05D001988 ORTHO05D004985 1.7e-177 627.1 732 47.5
THA.LOC104805159 Tarenaya hassleriana HOM05D001988 ORTHO05D004985 2.7e-175 619.8 726 47.1
HanXRQChr05g0145521 Helianthus annuus HOM05D001988 ORTHO05D004985 3.9e-174 615.9 724 48.2
Lalb_Chr14g0368981 Lupinus albus HOM05D001988 ORTHO05D004985 5.1e-174 615.5 714 48.9
Psat7g139200 Pisum sativum HOM05D001988 ORTHO05D004985 1.9e-173 613.6 728 46.7
HanXRQChr09g0255131 Helianthus annuus HOM05D001988 ORTHO05D004985 5.6e-173 612.1 710 48.7
Hund05880 Selenicereus undatus HOM05D001988 ORTHO05D004985 2.1e-172 610.1 733 48.7
ECA248G0899 Erigeron canadensis HOM05D001988 ORTHO05D004985 2.4e-171 606.7 733 47.2
Nitab4.5_0007649g0010 Nicotiana tabacum HOM05D001988 ORTHO05D004985 5.2e-171 605.5 722 47.0
AUR62005788 Chenopodium quinoa HOM05D001988 ORTHO05D004985 1.2e-170 604.4 732 48.1
CsaV3_2G009530 Cucumis sativus L. HOM05D001988 ORTHO05D004985 4.9e-169 599.0 644 51.9
Nitab4.5_0000428g0180 Nicotiana tabacum HOM05D001988 ORTHO05D004985 4.9e-169 599.0 714 47.6
MSTRG.27418 Avicennia marina HOM05D001988 ORTHO05D004985 6.4e-169 598.6 728 46.6
Lsat_1_v5_gn_5_156781 Lactuca sativa HOM05D001988 ORTHO05D004985 2.4e-168 596.7 726 46.7
Medtr4g071660 Medicago truncatula HOM05D001988 ORTHO05D004985 3.2e-168 596.3 719 46.6
TPR.G27077 Trifolium pratense HOM05D001988 ORTHO05D004985 5.4e-168 595.5 724 46.0
Lsat_1_v5_gn_8_100701 Lactuca sativa HOM05D001988 ORTHO05D004985 7.1e-168 595.1 725 46.9
Peaxi162Scf00217g00713 Petunia axillaris HOM05D001988 ORTHO05D004985 1.6e-167 594.0 707 47.5
Cc09_g03970 Coffea canephora HOM05D001988 ORTHO05D004985 2.7e-167 593.2 709 47.7
PGSC0003DMG401018705 Solanum tuberosum HOM05D001988 ORTHO05D004985 4.3e-165 585.9 714 46.5
Solyc11g071540.2 Solanum lycopersicum HOM05D001988 ORTHO05D004985 1.3e-164 584.3 705 46.8
EL10Ac6g13205 Beta vulgaris HOM05D001988 ORTHO05D004985 2.8e-164 583.2 746 46.2
Sopen11g029230 Solanum pennellii HOM05D001988 ORTHO05D004985 6.9e-163 578.6 704 47.0
CAN.G439.30 Capsicum annuum HOM05D001988 ORTHO05D004985 3.4e-162 576.2 706 46.7
Migut.F02100 Erythranthe guttata HOM05D001988 ORTHO05D004985 1.6e-159 567.4 721 45.2
EL10Ac9g22126 Beta vulgaris HOM05D001988 ORTHO05D004985 4.6e-159 565.8 790 43.2
Aa31LG2G7390 Aethionema arabicum HOM05D001988 ORTHO05D004985 6.2e-156 555.4 745 45.5
AUR62028773 Chenopodium quinoa HOM05D001988 ORTHO05D004985 1.1e-155 554.7 703 46.8
Carub.0005s0183 Capsella rubella HOM05D001988 ORTHO05D004985 6.9e-155 552.0 742 45.7
Lsat_1_v5_gn_4_55321 Lactuca sativa HOM05D001988 ORTHO05D004985 1.2e-154 551.2 724 44.6
RcHm_v2.0_Chr7g0220021 Rosa chinensis HOM05D001988 ORTHO05D004985 5.8e-154 548.9 552 53.3
SHI13475 Sapria himalayana HOM05D001988 ORTHO05D004985 1.7e-153 547.4 702 45.4
RcHm_v2.0_Chr5g0048641 Rosa chinensis HOM05D001988 ORTHO05D004985 4.9e-153 545.8 552 53.1
SGA_v2.0_scaffold58G20462 Striga asiatica HOM05D001988 ORTHO05D004985 4.9e-153 545.8 720 43.6
Ah.05g179340 Amaranthus hybridus HOM05D001988 ORTHO05D004985 2.7e-151 540.0 752 43.2
Sopen09g001990 Solanum pennellii HOM05D001988 ORTHO05D004985 1.8e-150 537.3 714 44.3
TAR629G1399 Trochodendron aralioides HOM05D001988 ORTHO05D004985 6.7e-150 535.4 535 54.4
Solyc09g007120.4 Solanum lycopersicum HOM05D001988 ORTHO05D004985 3.3e-149 533.1 704 44.2
Sc11g0001930 Simmondsia chinensis HOM05D001988 ORTHO05D004985 9.6e-149 531.6 743 44.0
ECA234G0637 Erigeron canadensis HOM05D001988 ORTHO05D004985 2.1e-148 530.4 702 44.7
SalBow1G3615 Salvia bowleyana HOM05D001988 ORTHO05D004985 4.0e-147 526.2 691 45.2
Aqoxy1G01101 Aquilegia oxysepala HOM05D001988 ORTHO05D004985 5.3e-147 525.8 747 41.9
TPR.G16225 Trifolium pratense HOM05D001988 ORTHO05D004985 6.9e-147 525.4 716 42.3
AL5G12570 Arabidopsis lyrata HOM05D001988 ORTHO05D004985 5.8e-146 522.3 730 44.1
DCAR_007151 Daucus carota HOM05D001988 ORTHO05D004985 5.5e-144 515.8 710 42.4
AT2G02955 Arabidopsis thaliana HOM05D001988 ORTHO05D004985 3.3e-141 506.5 724 42.4
Dinv16646 Davidia involucrata HOM05D001988 ORTHO05D004985 5.7e-141 505.8 412 61.9
Medtr5g067430 Medicago truncatula HOM05D001988 ORTHO05D004985 2.1e-135 487.3 724 42.0
A09p68050 Brassica napus HOM05D001988 ORTHO05D004985 3.0e-134 483.4 730 41.8
Thhalv10027666m.g Eutrema salsugineum HOM05D001988 ORTHO05D004985 3.0e-134 483.4 726 43.0
BolC8t52776H Brassica oleracea HOM05D001988 ORTHO05D004985 3.9e-134 483.0 731 42.1
BraA09t42140Z Brassica rapa HOM05D001988 ORTHO05D004985 8.7e-134 481.9 729 41.7
Sp7g05500 Schrenkiella parvula HOM05D001988 ORTHO05D004985 1.5e-133 481.1 733 42.4
BcaC07g42212 Brassica carinata HOM05D001988 ORTHO05D004985 9.7e-133 478.4 726 41.0
Migut.I00421 Erythranthe guttata HOM05D001988 ORTHO05D004985 9.7e-133 478.4 721 39.7
C08p52490 Brassica napus HOM05D001988 ORTHO05D004985 1.6e-132 477.6 731 41.0
unitig_60.g25620 Utricularia gibba HOM05D001988 ORTHO05D004985 6.9e-131 472.2 700 40.1
Hma1.2p1_0265F.1_g106750 Hydrangea macrophylla HOM05D001988 ORTHO05D004985 4.5e-130 469.5 422 56.9
CDE07G0941 Ceratophyllum demersum HOM05D001988 ORTHO05D004985 7.2e-128 462.2 613 43.2
PSO017G3571 Papaver somniferum HOM05D001988 ORTHO05D004985 3.1e-123 446.8 688 40.0
Oeu037938.2 Olea europaea HOM05D001988 ORTHO05D004985 5.9e-122 442.6 513 48.3
AL6G52060 Arabidopsis lyrata HOM05D001988 ORTHO05D004985 1.3e-121 441.4 694 40.1
HPP92_021577 Vanilla planifolia HOM05D001988 ORTHO05D004985 4.4e-117 426.4 733 38.9
PSO063G4641 Papaver somniferum HOM05D001988 ORTHO05D004985 2.8e-116 423.7 687 38.7
Potri.010G169500 Populus trichocarpa HOM05D001988 ORTHO05D004985 7.7e-114 415.6 436 52.8
Carub.0006s3640 Capsella rubella HOM05D001988 ORTHO05D004985 5.2e-110 402.9 701 38.7
MBI19_g09828_MAGBIO Magnolia biondii HOM05D001988 ORTHO05D004985 2.6e-109 400.6 548 43.8
AUR62008859 Chenopodium quinoa HOM05D001988 ORTHO05D004985 4.2e-104 383.3 439 48.5
SEGI_17598 Sequoiadendron giganteum HOM05D001988 ORTHO05D004985 4.2e-104 383.3 726 36.6
CARHR145370 Cardamine hirsuta HOM05D001988 ORTHO05D004985 6.8e-102 375.9 506 44.9
SEGI_28471 Sequoiadendron giganteum HOM05D001988 ORTHO05D004985 2.8e-100 370.5 707 35.8
Atru.chr11.1785 Acer truncatum HOM05D001988 ORTHO05D004985 2.7e-98 364.0 365 54.8
COL.COLO4_23013 Corchorus olitorius HOM05D001988 ORTHO05D004985 3.6e-95 353.6 734 34.6
Zm00001eb284870 Zea mays HOM05D001988 ORTHO05D004985 1.6e-90 338.2 707 33.9
Thhalv10004418m.g Eutrema salsugineum HOM05D001988 ORTHO05D004985 1.1e-83 315.5 383 45.7
Oeu007681.1 Olea europaea HOM05D001988 ORTHO05D004985 1.7e-81 308.1 312 52.9
Hund25598 Selenicereus undatus HOM05D001988 ORTHO05D004985 6.8e-78 296.2 666 33.3
arahy.Tifrunner.gnm1.ann1.N3HM5N Arachis hypogaea HOM05D001988 ORTHO05D004985 1.4e-75 288.5 402 42.0
Pp3c9_8400 Physcomitrium patens HOM05D001988 ORTHO05D004985 1.5e-69 268.5 725 30.5
Mapoly0075s0087 Marchantia polymorpha HOM05D001988 ORTHO05D004985 6.8e-62 243.0 812 27.8
PGSC0003DMG400002020 Solanum tuberosum HOM05D001988 ORTHO05D004985 9.2e-59 232.6 164 67.1
AagrBONN_evm.TU.Sc2ySwM_362.1334 Anthoceros agrestis HOM05D001988 ORTHO05D004985 5.6e-56 223.4 635 27.9
ATR0782G208 Amborella trichopoda HOM05D001988 ORTHO05D004985 2.8e-55 221.1 402 37.1
Atru.chr11.1786 Acer truncatum HOM05D001988 ORTHO05D004985 6.4e-52 209.9 141 68.1
Hund25529 Selenicereus undatus HOM05D001988 ORTHO05D004985 3.3e-48 197.6 264 42.0
Aqoxy5G02833 Aquilegia oxysepala HOM05D001988 ORTHO05D004985 4.0e-46 190.7 240 46.2
RcHm_v2.0_Chr7g0220011 Rosa chinensis HOM05D001988 ORTHO05D004985 9.3e-43 179.5 123 69.1
Actinidia31897 Actinidia chinensis HOM05D001988 ORTHO05D004985 1.2e-42 179.1 243 42.8
RcHm_v2.0_Chr5g0048631 Rosa chinensis HOM05D001988 ORTHO05D004985 3.3e-40 171.0 123 67.5
Peaxi162Scf00342g00711 Petunia axillaris HOM05D001988 ORTHO05D004985 1.3e-39 169.1 502 29.1
PSO513G0179 Papaver somniferum HOM05D001988 ORTHO05D004985 2.8e-39 167.9 528 27.8
Aqoxy5G02832 Aquilegia oxysepala HOM05D001988 ORTHO05D004985 1.2e-37 162.5 244 39.3
AagrBONN_evm.TU.Sc2ySwM_362.1335 Anthoceros agrestis HOM05D000001 ORTHO05D000003 3.8e-36 157.5 589 25.5
Medtr4g071850 Medicago truncatula HOM05D001988 ORTHO05D004985 3.2e-35 154.5 203 43.3
SMO239G0039 Selaginella moellendorffii HOM05D001988 ORTHO05D004985 9.0e-30 136.3 148 45.3
Aqoxy5G02834 Aquilegia oxysepala HOM05D001988 ORTHO05D004985 5.5e-27 127.1 94 61.7
CARHR212720 Cardamine hirsuta HOM05D001988 ORTHO05D004985 7.9e-26 123.2 336 29.8
CARHR145380 Cardamine hirsuta HOM05D001988 ORTHO05D004985 2.5e-24 118.2 192 37.0
AagrBONN_evm.TU.Sc2ySwM_117.2968 Anthoceros agrestis HOM05D001988 ORTHO05D004985 2.2e-20 105.1 199 31.7
AT1G42615 Arabidopsis thaliana HOM05D001988 ORTHO05D004985 1.0e-17 96.3 148 39.2
CDE06G2098 Ceratophyllum demersum HOM05D001988 ORTHO05D004985 5.7e-16 90.5 329 25.8
AagrBONN_evm.TU.Sc2ySwM_369.75 Anthoceros agrestis HOM05D001988 ORTHO05D004985 7.4e-16 90.1 204 29.9
Peaxi162Scf00342g00712 Petunia axillaris HOM05D001988 ORTHO05D004985 4.8e-15 87.4 171 35.1
Sp2g13990 Schrenkiella parvula HOM05D001988 ORTHO05D004985 3.1e-14 84.7 240 30.8
arahy.Tifrunner.gnm1.ann1.ZE0ACQ Arachis hypogaea HOM05D000603 ORTHO05D008734 4.1e-14 84.3 73 50.7
EL10As5g23508 Beta vulgaris HOM05D001988 ORTHO05D004985 5.9e-13 80.5 83 51.8
BcaC07g42209 Brassica carinata HOM05D001988 ORTHO05D004985 3.8e-12 77.8 133 40.6
MCO03G550 Micromonas commoda HOM05D001988 ORTHO05D004985 3.2e-11 74.7 113 31.0
BcaC06g34029 Brassica carinata HOM05D001988 ORTHO05D004985 9.4e-11 73.2 76 52.6
Cfa008983 Carpinus fangiana HOM05D001988 ORTHO05D004985 9.4e-11 73.2 121 41.3
CARHR289080 Cardamine hirsuta HOM05D001988 ORTHO05D004985 3.6e-10 71.2 65 60.0
AL7G47160 Arabidopsis lyrata HOM05D001988 ORTHO05D004985 6.1e-10 70.5 61 60.7
Atru.chr11.1787 Acer truncatum HOM05D001988 ORTHO05D004985 8.8e-09 66.6 57 52.6
QL03p063393 Quercus lobata HOM05D001988 ORTHO05D004985 3.7e-07 61.2 65 47.7
Os05g0352700 Oryza sativa ssp. japonica HOM05D001988 ORTHO05D004985 4.8e-07 60.8 184 32.1
QL03p064050 Quercus lobata HOM05D001988 ORTHO05D004985 1.8e-06 58.9 65 44.6


User provided reference genes

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