Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.A02297 Eucalyptus grandis HOM05D003639 ORTHO05D004246 2.1e-170 603.2 576 100.0
TAR369G0628 Trochodendron aralioides HOM05D003639 ORTHO05D004246 8.3e-103 378.6 324 75.0
TWI74G0834 Tripterygium wilfordii HOM05D003639 ORTHO05D004246 7.1e-102 375.6 324 74.4
PGR004G0521 Punica granatum HOM05D003639 ORTHO05D004246 2.1e-101 374.0 586 68.1
CSS0048368 Camellia sinensis var. sinensis HOM05D003639 ORTHO05D004246 7.8e-101 372.1 327 72.8
Hma1.2p1_2162F.1_g315680 Hydrangea macrophylla HOM05D003639 ORTHO05D004246 1.0e-100 371.7 414 67.6
MSTRG.6401 Avicennia marina HOM05D003639 ORTHO05D004246 2.3e-100 370.5 383 64.8
PGSC0003DMG400012703 Solanum tuberosum HOM05D003639 ORTHO05D004246 2.3e-100 370.5 423 62.6
Duzib132G0222 Durio zibethinus HOM05D003639 ORTHO05D004246 8.6e-100 368.6 406 64.3
Solyc04g016510.3 Solanum lycopersicum HOM05D003639 ORTHO05D004246 8.6e-100 368.6 423 62.2
Phvul.007G249600 Phaseolus vulgaris HOM05D003639 ORTHO05D004246 1.5e-99 367.9 408 67.4
Duzib248G1450 Durio zibethinus HOM05D003639 ORTHO05D004246 3.3e-99 366.7 406 65.8
Sopen04g008580 Solanum pennellii HOM05D003639 ORTHO05D004246 4.3e-99 366.3 425 61.4
arahy.Tifrunner.gnm1.ann1.Y8CJQK Arachis hypogaea HOM05D003639 ORTHO05D004246 9.5e-99 365.2 320 74.4
Nitab4.5_0001618g0260 Nicotiana tabacum HOM05D003639 ORTHO05D004246 1.6e-98 364.4 321 73.2
Nitab4.5_0000826g0140 Nicotiana tabacum HOM05D003639 ORTHO05D004246 2.1e-98 364.0 411 64.7
Peaxi162Scf00130g00929 Petunia axillaris HOM05D003639 ORTHO05D004246 2.8e-98 363.6 409 68.2
COL.COLO4_24957 Corchorus olitorius HOM05D003639 ORTHO05D004246 3.6e-98 363.2 390 65.6
Lalb_Chr21g0305241 Lupinus albus HOM05D003639 ORTHO05D004246 4.7e-98 362.8 407 62.2
Haze_19749 Corylus avellana HOM05D003639 ORTHO05D004246 6.2e-98 362.5 323 61.9
CiPaw.09G042100 Carya illinoinensis HOM05D003639 ORTHO05D004246 8.1e-98 362.1 408 67.9
arahy.Tifrunner.gnm1.ann1.6W6BYV Arachis hypogaea HOM05D003639 ORTHO05D004246 1.4e-97 361.3 318 73.9
Manes.09G015900 Manihot esculenta HOM05D003639 ORTHO05D004246 1.4e-97 361.3 277 71.1
Thecc.02G139000 Theobroma cacao HOM05D003639 ORTHO05D004246 1.4e-97 361.3 406 63.1
CAN.G1237.4 Capsicum annuum HOM05D003639 ORTHO05D004246 1.8e-97 360.9 393 66.9
VMungo0720G2842 Vigna mungo HOM05D003639 ORTHO05D004246 2.0e-96 357.5 402 68.7
Hund19126 Selenicereus undatus HOM05D003639 ORTHO05D004246 7.6e-96 355.5 320 72.5
Actinidia39194 Actinidia chinensis HOM05D003639 ORTHO05D004246 1.3e-95 354.8 425 63.3
Lj5g0008946 Lotus japonicus HOM05D003639 ORTHO05D004246 8.3e-95 352.1 325 71.1
Rhsim03G0032000 Rhododendron simsii HOM05D003639 ORTHO05D004246 8.3e-95 352.1 410 62.7
Glyma.02G190600 Glycine max HOM05D003639 ORTHO05D004246 1.1e-94 351.7 406 61.8
QL07p005224 Quercus lobata HOM05D003639 ORTHO05D004246 1.9e-94 350.9 414 60.4
Cpa.g.sc120.6 Carica papaya HOM05D003639 ORTHO05D004246 2.4e-94 350.5 408 60.3
Migut.J01707 Erythranthe guttata HOM05D003639 ORTHO05D004246 4.1e-94 349.7 410 59.3
Prupe.7G050300 Prunus persica HOM05D003639 ORTHO05D004246 4.1e-94 349.7 380 63.7
Medtr3g045130 Medicago truncatula HOM05D003639 ORTHO05D004246 5.4e-94 349.4 379 57.3
Psat6g009840 Pisum sativum HOM05D003639 ORTHO05D004246 9.2e-94 348.6 324 70.4
Potri.006G045800 Populus trichocarpa HOM05D003639 ORTHO05D004246 1.2e-93 348.2 409 62.1
DCAR_014011 Daucus carota HOM05D003639 ORTHO05D004246 2.1e-93 347.4 404 63.6
Ca_25791_v3 Cicer arietinum L. HOM05D003639 ORTHO05D004246 3.5e-93 346.7 406 63.5
Dinv30299 Davidia involucrata HOM05D003639 ORTHO05D004246 3.5e-93 346.7 410 64.4
MD12G1086300 Malus domestica HOM05D003639 ORTHO05D004246 3.5e-93 346.7 328 70.4
TPR.G1512 Trifolium pratense HOM05D003639 ORTHO05D004246 2.3e-92 344.0 319 70.2
Oeu023136.1 Olea europaea HOM05D003639 ORTHO05D004246 6.6e-92 342.4 410 64.6
Ciclev10006458m.g Citrus clementina HOM05D003639 ORTHO05D004246 8.6e-92 342.0 412 62.6
ClCG08G008940 Citrullus lanatus HOM05D003639 ORTHO05D004246 1.1e-91 341.7 373 64.6
Glyma.10G000800 Glycine max HOM05D003639 ORTHO05D004246 1.1e-91 341.7 406 66.5
AUR62026120 Chenopodium quinoa HOM05D003639 ORTHO05D004246 1.5e-91 341.3 318 70.8
Nn7g37752 Nelumbo nucifera HOM05D003639 ORTHO05D004246 1.5e-91 341.3 424 60.1
Sc19g0008460 Simmondsia chinensis HOM05D003639 ORTHO05D004246 5.6e-91 339.3 323 70.6
MELO3C026433.2 Cucumis melo HOM05D003639 ORTHO05D004246 7.3e-91 339.0 405 61.2
Peaxi162Scf00177g10117 Petunia axillaris HOM05D003639 ORTHO05D004246 2.1e-90 337.4 264 67.8
CsaV3_6G036200 Cucumis sativus L. HOM05D003639 ORTHO05D004246 3.6e-90 336.7 405 61.0
EL10Ac3g07157 Beta vulgaris HOM05D003639 ORTHO05D004246 4.7e-90 336.3 318 68.9
SalBow6G0945 Salvia bowleyana HOM05D003639 ORTHO05D004246 8.1e-90 335.5 362 56.9
Aqoxy3G00063 Aquilegia oxysepala HOM05D003639 ORTHO05D004246 1.8e-89 334.3 302 73.2
AUR62024528 Chenopodium quinoa HOM05D003639 ORTHO05D004246 1.5e-88 331.3 418 59.8
SGA_v2.0_scaffold296G47577 Striga asiatica HOM05D003639 ORTHO05D004246 7.6e-88 328.9 315 68.3
Ah.13g076790 Amaranthus hybridus HOM05D003639 ORTHO05D004246 1.7e-87 327.8 404 61.6
TPR.G10246 Trifolium pratense HOM05D003639 ORTHO05D004246 2.9e-87 327.0 407 60.0
SGA_v2.0_scaffold69G23129 Striga asiatica HOM05D003639 ORTHO05D004246 8.4e-87 325.5 321 67.0
MBI13_g04793_MAGBIO Magnolia biondii HOM05D003639 ORTHO05D004246 1.9e-86 324.3 318 68.2
Gohir.A12G015000 Gossypium hirsutum HOM05D003639 ORTHO05D004246 4.2e-86 323.2 390 62.1
Gohir.D12G015400 Gossypium hirsutum HOM05D003639 ORTHO05D004246 4.2e-86 323.2 390 62.6
CSS0037940 Camellia sinensis var. sinensis HOM05D003639 ORTHO05D004246 9.3e-86 322.0 374 55.6
Gorai.008G015500 Gossypium raimondii HOM05D003639 ORTHO05D004246 1.2e-85 321.6 380 62.1
Lsat_1_v5_gn_4_41600 Lactuca sativa HOM05D003639 ORTHO05D004246 1.6e-85 321.2 380 63.4
CANSAT80G2101 Cannabis sativa HOM05D003639 ORTHO05D004246 7.8e-85 318.9 418 61.0
CDE04G0356 Ceratophyllum demersum HOM05D003639 ORTHO05D004246 1.6e-82 311.2 302 68.2
ATR0665G145 Amborella trichopoda HOM05D003639 ORTHO05D004246 1.4e-81 308.1 324 64.5
Atru.chr1.1191 Acer truncatum HOM05D003639 ORTHO05D004246 1.8e-81 307.8 288 67.0
unitig_578.g16292 Utricularia gibba HOM05D003639 ORTHO05D004246 1.8e-81 307.8 302 68.5
Hma1.2p1_0338F.1_g129500 Hydrangea macrophylla HOM05D003639 ORTHO05D004246 3.1e-81 307.0 287 71.4
THA.LOC104824426 Tarenaya hassleriana HOM05D003639 ORTHO05D004246 6.9e-81 305.8 323 63.8
Hma1.2p1_1333F.1_g276240 Hydrangea macrophylla HOM05D003639 ORTHO05D004246 1.2e-80 305.1 287 70.0
CANSAT80G0359 Cannabis sativa HOM05D003639 ORTHO05D004246 2.6e-80 303.9 418 60.0
Carub.0004s0611 Capsella rubella HOM05D003639 ORTHO05D004246 5.8e-80 302.8 317 64.4
SEGI_17823 Sequoiadendron giganteum HOM05D003639 ORTHO05D004246 9.9e-80 302.0 322 63.7
Lj4C34T1 Lonicera japonica HOM05D003639 ORTHO05D004246 1.7e-79 301.2 299 61.2
Aa31LG1G23520 Aethionema arabicum HOM05D003639 ORTHO05D004246 2.9e-79 300.4 317 64.0
ECA234G2577 Erigeron canadensis HOM05D003639 ORTHO05D004246 4.9e-79 299.7 322 62.7
A04p31660 Brassica napus HOM05D003639 ORTHO05D004246 1.9e-78 297.7 317 64.0
C04p69090 Brassica napus HOM05D003639 ORTHO05D004246 1.9e-78 297.7 318 64.5
BolC4t28406H Brassica oleracea HOM05D003639 ORTHO05D004246 1.9e-78 297.7 318 64.5
BraA04t18624Z Brassica rapa HOM05D003639 ORTHO05D004246 1.9e-78 297.7 317 64.0
FAN14G4828 Fragaria x ananassa HOM05D003639 ORTHO05D004246 4.2e-78 296.6 274 62.0
PSO063G3048 Papaver somniferum HOM05D003639 ORTHO05D004246 9.3e-78 295.4 256 66.4
CARHR136620 Cardamine hirsuta HOM05D003639 ORTHO05D004246 1.2e-77 295.0 384 60.2
unitig_44.g31550 Utricularia gibba HOM05D003639 ORTHO05D004246 1.6e-77 294.7 370 56.2
PSO832G3057 Papaver somniferum HOM05D003639 ORTHO05D004246 2.1e-77 294.3 373 56.0
FvH4_6g24750 Fragaria vesca HOM05D003639 ORTHO05D004246 2.7e-77 293.9 274 61.7
Sp4g23770 Schrenkiella parvula HOM05D003639 ORTHO05D004246 1.0e-76 292.0 380 59.2
Thhalv10016457m.g Eutrema salsugineum HOM05D003639 ORTHO05D004246 1.3e-76 291.6 315 62.2
AL4G39590 Arabidopsis lyrata HOM05D003639 ORTHO05D004246 1.7e-76 291.2 317 62.5
Thhalv10000860m.g Eutrema salsugineum HOM05D003639 ORTHO05D004246 1.7e-76 291.2 316 62.0
Medtr5g022690 Medicago truncatula HOM05D003639 ORTHO05D004246 3.0e-76 290.4 316 55.4
FAN09G0054 Fragaria x ananassa HOM05D003639 ORTHO05D004246 5.1e-76 289.7 266 61.3
AT2G41500 Arabidopsis thaliana HOM05D003639 ORTHO05D004246 2.5e-75 287.3 315 61.9
FAN02G3905 Fragaria x ananassa HOM05D003639 ORTHO05D004246 2.5e-75 287.3 273 60.4
Sed0002463 Sechium edule HOM05D003639 ORTHO05D004246 4.3e-75 286.6 276 69.9
A05p02320 Brassica napus HOM05D003639 ORTHO05D004246 2.1e-74 284.3 307 62.9
FAN05G0107 Fragaria x ananassa HOM05D003639 ORTHO05D004246 6.9e-73 279.3 256 61.7
BraA05t19227Z Brassica rapa HOM05D003639 ORTHO05D004246 1.5e-72 278.1 307 61.9
BolC4t21916H Brassica oleracea HOM05D003639 ORTHO05D004246 2.0e-72 277.7 308 62.0
C04p02760 Brassica napus HOM05D003639 ORTHO05D004246 3.4e-72 276.9 307 62.5
Os03g0355200 Oryza sativa ssp. japonica HOM05D003639 ORTHO05D004246 1.4e-70 271.6 298 59.4
Os03g0355400 Oryza sativa ssp. japonica HOM05D003639 ORTHO05D004246 1.4e-70 271.6 298 59.4
RcHm_v2.0_Chr3g0484331 Rosa chinensis HOM05D003639 ORTHO05D004246 1.3e-68 265.0 236 63.6
HPP92_010210 Vanilla planifolia HOM05D000527 ORTHO05D000559 6.7e-68 262.7 319 60.2
TAR065G0005 Trochodendron aralioides HOM05D003639 ORTHO05D004246 1.5e-67 261.5 233 75.1
HPP92_010189 Vanilla planifolia HOM05D003639 ORTHO05D004246 1.9e-67 261.2 319 60.2
Sabra06G0031300 Salix brachista HOM05D003639 ORTHO05D004246 5.6e-67 259.6 409 55.7
BcaNung06794 Brassica carinata HOM05D003639 ORTHO05D004246 4.8e-66 256.5 307 60.6
Potri.016G042250 Populus trichocarpa HOM05D003639 ORTHO05D004246 3.8e-63 246.9 394 45.2
BcaC02g12784 Brassica carinata HOM05D003639 ORTHO05D004246 2.7e-61 240.7 307 57.7
GSVIVG01033551001 Vitis vinifera HOM05D003639 ORTHO05D004246 3.9e-60 236.9 216 73.1
Mapoly0061s0123 Marchantia polymorpha HOM05D003639 ORTHO05D004246 1.8e-57 228.0 296 47.6
AagrBONN_evm.TU.Sc2ySwM_117.1154 Anthoceros agrestis HOM05D003639 ORTHO05D004246 3.1e-57 227.3 312 45.5
Pp3c9_11970 Physcomitrium patens HOM05D003639 ORTHO05D004246 3.1e-57 227.3 338 44.4
Zm00001eb017050 Zea mays HOM05D003639 ORTHO05D004246 1.2e-56 225.3 183 61.2
MD14G1080500 Malus domestica HOM05D003639 ORTHO05D004246 2.0e-56 224.6 195 61.5
CBR_g723 Chara braunii HOM05D003639 ORTHO05D004246 2.6e-56 224.2 317 45.1
Cc06_g18350 Coffea canephora HOM05D003639 ORTHO05D004246 4.2e-54 216.9 217 69.6
VMungo0540G1675 Vigna mungo HOM05D003639 ORTHO05D004246 4.3e-51 206.8 187 59.4
FAN14G5922 Fragaria x ananassa HOM05D003639 ORTHO05D004246 5.9e-48 196.4 180 62.2
FAN19G1783 Fragaria x ananassa HOM05D003639 ORTHO05D004246 5.9e-48 196.4 180 62.2
FAN03G0195 Fragaria x ananassa HOM05D003639 ORTHO05D004246 1.7e-47 194.9 180 61.7
FAN07G1748 Fragaria x ananassa HOM05D003639 ORTHO05D004246 1.7e-47 194.9 180 61.7
FAN10G2664 Fragaria x ananassa HOM05D003639 ORTHO05D004246 1.7e-47 194.9 180 61.7
FAN17G3014 Fragaria x ananassa HOM05D003639 ORTHO05D004246 1.7e-47 194.9 180 62.2
FAN23G2202 Fragaria x ananassa HOM05D003639 ORTHO05D004246 1.7e-47 194.9 180 61.7
Mapoly0014s0154 Marchantia polymorpha HOM05D003639 ORTHO05D004246 1.7e-47 194.9 270 45.6
FAN01G0512 Fragaria x ananassa HOM05D003639 ORTHO05D004246 3.8e-47 193.7 180 61.7
FAN06G0994 Fragaria x ananassa HOM05D003639 ORTHO05D004246 6.5e-47 193.0 180 61.1
FAN24G0290 Fragaria x ananassa HOM05D003639 ORTHO05D004246 1.9e-46 191.4 180 61.1
FAN28G1931 Fragaria x ananassa HOM05D003639 ORTHO05D004246 3.2e-46 190.7 180 60.6
FAN22G1757 Fragaria x ananassa HOM05D003639 ORTHO05D004246 4.2e-46 190.3 180 60.6
FAN27G3180 Fragaria x ananassa HOM05D003639 ORTHO05D004246 9.4e-46 189.1 180 61.1
FAN13G2401 Fragaria x ananassa HOM05D003639 ORTHO05D004246 2.7e-45 187.6 166 63.3
FAN09G4382 Fragaria x ananassa HOM05D003639 ORTHO05D004246 1.4e-44 185.3 177 60.5
Psat6g118240 Pisum sativum HOM05D003639 ORTHO05D004246 1.7e-42 178.3 407 45.9
SMO356G0612 Selaginella moellendorffii HOM05D003639 ORTHO05D004246 6.3e-42 176.4 235 47.2
Medtr0012s0110 Medicago truncatula HOM05D003639 ORTHO05D004246 5.3e-41 173.3 199 57.3
FAN16G0989 Fragaria x ananassa HOM05D003639 ORTHO05D004246 9.1e-41 172.6 180 57.8
vmacro21947 Vaccinium macrocarpon HOM05D003639 ORTHO05D004246 2.2e-39 167.9 324 43.5
BcaB06g29187 Brassica carinata HOM05D003639 ORTHO05D004246 8.5e-39 166.0 190 64.2
Sed0000547 Sechium edule HOM05D003639 ORTHO05D004246 3.2e-38 164.1 161 58.4
BcaNung04072 Brassica carinata HOM05D003639 ORTHO05D004246 4.7e-37 160.2 157 56.7
FAN25G1774 Fragaria x ananassa HOM05D003639 ORTHO05D004246 2.0e-35 154.8 180 53.3
BolC5t34692H Brassica oleracea HOM05D003639 ORTHO05D004246 9.7e-35 152.5 153 57.5
FAN17G0086 Fragaria x ananassa HOM05D003639 ORTHO05D004246 2.6e-32 144.4 143 60.1
Atru.chr6.1378 Acer truncatum HOM05D003639 ORTHO05D004246 3.6e-29 134.0 200 52.0
Atru.chr6.1379 Acer truncatum HOM05D003639 ORTHO05D004246 3.6e-29 134.0 79 82.3
RcHm_v2.0_Chr3g0484501 Rosa chinensis HOM05D003639 ORTHO05D004246 8.0e-29 132.9 151 50.3
MELO3C019779.2 Cucumis melo HOM05D003639 ORTHO05D004246 4.0e-28 130.6 185 45.4
MCO12G002 Micromonas commoda HOM05D003639 ORTHO05D004246 1.8e-25 121.7 297 32.0
AT2G05720 Arabidopsis thaliana HOM05D003639 ORTHO05D004246 2.0e-24 118.2 146 47.3
RcHm_v2.0_Chr3g0484401 Rosa chinensis HOM05D003639 ORTHO05D004246 4.5e-24 117.1 109 59.6
Psat4g106880 Pisum sativum HOM05D003639 ORTHO05D004246 1.0e-20 105.9 119 52.9
Atru.chr1.1192 Acer truncatum HOM05D003639 ORTHO05D004246 4.1e-17 94.0 93 86.0
MELO3C019777.2 Cucumis melo HOM05D003639 ORTHO05D004246 3.5e-16 90.9 156 44.9
Lj4A34T49 Lonicera japonica HOM05D003639 ORTHO05D004246 5.9e-16 90.1 93 82.8
Atru.chr6.1380 Acer truncatum HOM05D003639 ORTHO05D004246 1.7e-15 88.6 93 51.6
QL04p089213 Quercus lobata HOM05D003639 ORTHO05D004246 3.6e-13 80.9 115 48.7
Cfa024100 Carpinus fangiana HOM05D003639 ORTHO05D004246 5.2e-12 77.0 266 28.2
AL3G43260 Arabidopsis lyrata HOM05D003639 ORTHO05D004246 9.8e-11 72.8 87 49.4
PRCOL_00003365 Prasinoderma coloniale HOM05D003639 ORTHO05D004246 3.7e-10 70.9 140 39.3
BcaNung04071 Brassica carinata HOM05D003639 ORTHO05D004246 4.9e-10 70.5 94 68.1
Cre16.g662800 Chlamydomonas reinhardtii HOM05D003639 ORTHO05D004246 1.2e-08 65.9 77 45.5
BcaC02g12785 Brassica carinata HOM05D003639 ORTHO05D004246 2.0e-08 65.1 52 65.4


User provided reference genes

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