Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.A02017 Eucalyptus grandis HOM05D004503 ORTHO05D005460 0.0e+00 1499.6 743 100.0
PGR042G1526 Punica granatum HOM05D004503 ORTHO05D005460 0.0e+00 1352.0 727 90.9
GSVIVG01020844001 Vitis vinifera HOM05D004503 ORTHO05D005460 0.0e+00 1274.6 726 85.7
TAR629G1355 Trochodendron aralioides HOM05D004503 ORTHO05D005460 0.0e+00 1256.5 726 84.6
ClCG11G016490 Citrullus lanatus HOM05D004503 ORTHO05D005460 0.0e+00 1252.3 726 83.3
MELO3C026971.2 Cucumis melo HOM05D004503 ORTHO05D005460 0.0e+00 1250.0 726 83.1
Lalb_Chr07g0191281 Lupinus albus HOM05D004503 ORTHO05D005460 0.0e+00 1248.8 727 83.4
MD17G1136200 Malus domestica HOM05D004503 ORTHO05D005460 0.0e+00 1248.0 727 83.5
Glyma.18G109800 Glycine max HOM05D004503 ORTHO05D005460 0.0e+00 1247.6 726 82.8
CsaV3_4G031940 Cucumis sativus L. HOM05D004503 ORTHO05D005460 0.0e+00 1246.9 726 83.1
Thecc.01G170000 Theobroma cacao HOM05D004503 ORTHO05D005460 0.0e+00 1246.9 727 83.9
Glyma.08G307900 Glycine max HOM05D004503 ORTHO05D005460 0.0e+00 1245.3 726 82.4
Gorai.001G211500 Gossypium raimondii HOM05D004503 ORTHO05D005460 0.0e+00 1245.0 727 83.4
Medtr3g046640 Medicago truncatula HOM05D004503 ORTHO05D005460 0.0e+00 1244.2 733 82.4
VMungo0647G0468 Vigna mungo HOM05D004503 ORTHO05D005460 0.0e+00 1244.2 726 82.9
TWI14G0297 Tripterygium wilfordii HOM05D004503 ORTHO05D005460 0.0e+00 1243.4 731 83.6
Prupe.3G176600 Prunus persica HOM05D004503 ORTHO05D005460 0.0e+00 1242.3 727 83.1
Dinv07955 Davidia involucrata HOM05D004503 ORTHO05D005460 0.0e+00 1241.5 726 83.9
Medtr0071s0030 Medicago truncatula HOM05D004503 ORTHO05D005460 0.0e+00 1241.5 733 82.3
Ca_14599_v3 Cicer arietinum L. HOM05D004503 ORTHO05D005460 0.0e+00 1240.3 733 82.3
arahy.Tifrunner.gnm1.ann1.S01VYL Arachis hypogaea HOM05D004503 ORTHO05D005460 0.0e+00 1239.2 727 82.7
CANSAT64G0633 Cannabis sativa HOM05D004503 ORTHO05D005460 0.0e+00 1239.2 727 82.9
Gohir.A07G183000 Gossypium hirsutum HOM05D004503 ORTHO05D005460 0.0e+00 1238.0 727 83.1
Phvul.006G022400 Phaseolus vulgaris HOM05D004503 ORTHO05D005460 0.0e+00 1237.2 726 82.2
arahy.Tifrunner.gnm1.ann1.96CX7H Arachis hypogaea HOM05D004503 ORTHO05D005460 0.0e+00 1236.9 727 82.5
Lj6g0014906 Lotus japonicus HOM05D004503 ORTHO05D005460 0.0e+00 1233.8 731 82.2
COL.COLO4_08894 Corchorus olitorius HOM05D004503 ORTHO05D005460 0.0e+00 1232.2 744 81.2
Sed0003027 Sechium edule HOM05D004503 ORTHO05D005460 0.0e+00 1231.9 726 82.0
Psat5g185680 Pisum sativum HOM05D004503 ORTHO05D005460 0.0e+00 1231.5 733 81.9
Actinidia12541 Actinidia chinensis HOM05D004503 ORTHO05D005460 0.0e+00 1228.4 729 83.3
Potri.005G204400 Populus trichocarpa HOM05D004503 ORTHO05D005460 0.0e+00 1223.8 730 81.5
Lj1C677T5 Lonicera japonica HOM05D004503 ORTHO05D005460 0.0e+00 1222.6 726 82.1
Peaxi162Scf00111g00222 Petunia axillaris HOM05D004503 ORTHO05D005460 0.0e+00 1220.7 728 81.7
RcHm_v2.0_Chr2g0152001 Rosa chinensis HOM05D004503 ORTHO05D005460 0.0e+00 1214.9 743 79.9
CiPaw.13G152400 Carya illinoinensis HOM05D004503 ORTHO05D005460 0.0e+00 1213.7 733 82.4
Duzib138G1342 Durio zibethinus HOM05D004503 ORTHO05D005460 0.0e+00 1208.4 727 81.8
Sabra05G0155000 Salix brachista HOM05D004503 ORTHO05D005460 0.0e+00 1208.4 780 76.9
Sopen07g029580 Solanum pennellii HOM05D004503 ORTHO05D005460 0.0e+00 1204.9 728 81.0
FAN05G2445 Fragaria x ananassa HOM05D004503 ORTHO05D005460 0.0e+00 1204.1 743 79.4
Solyc07g056220.3 Solanum lycopersicum HOM05D004503 ORTHO05D005460 0.0e+00 1204.1 728 81.0
FvH4_6g38590 Fragaria vesca HOM05D004503 ORTHO05D005460 0.0e+00 1200.7 743 79.5
vmacro08730 Vaccinium macrocarpon HOM05D004503 ORTHO05D005460 0.0e+00 1197.2 792 76.9
Potri.002G057800 Populus trichocarpa HOM05D004503 ORTHO05D005460 0.0e+00 1196.0 730 80.5
Nitab4.5_0002251g0070 Nicotiana tabacum HOM05D004503 ORTHO05D005460 0.0e+00 1194.9 729 81.1
THA.LOC104826541 Tarenaya hassleriana HOM05D004503 ORTHO05D005460 0.0e+00 1194.9 744 79.0
FAN14G5858 Fragaria x ananassa HOM05D004503 ORTHO05D005460 0.0e+00 1194.1 743 79.1
Atru.chr6.2055 Acer truncatum HOM05D004503 ORTHO05D005460 0.0e+00 1193.3 727 80.7
Ciclev10030701m.g Citrus clementina HOM05D004503 ORTHO05D005460 0.0e+00 1192.2 726 80.6
Cpa.g.sc648.4 Carica papaya HOM05D004503 ORTHO05D005460 0.0e+00 1191.4 732 80.5
Thhalv10016232m.g Eutrema salsugineum HOM05D004503 ORTHO05D005460 0.0e+00 1182.9 744 78.0
CAN.G585.22 Capsicum annuum HOM05D004503 ORTHO05D005460 0.0e+00 1180.6 728 80.2
HanXRQChr13g0387771 Helianthus annuus HOM05D004503 ORTHO05D005460 0.0e+00 1179.5 726 78.8
HanXRQChr13g0403751 Helianthus annuus HOM05D004503 ORTHO05D005460 0.0e+00 1179.5 726 78.8
Lsat_1_v5_gn_8_31680 Lactuca sativa HOM05D004503 ORTHO05D005460 0.0e+00 1177.5 726 78.2
BcaC01g05572 Brassica carinata HOM05D004503 ORTHO05D005460 0.0e+00 1176.8 744 77.7
C03p24750 Brassica napus HOM05D004503 ORTHO05D005460 0.0e+00 1176.8 744 77.7
BolC3t14864H Brassica oleracea HOM05D004503 ORTHO05D005460 0.0e+00 1176.8 744 77.7
Aqoxy1G01732 Aquilegia oxysepala HOM05D004503 ORTHO05D005460 0.0e+00 1175.2 726 79.5
CARHR132590 Cardamine hirsuta HOM05D004503 ORTHO05D005460 0.0e+00 1174.5 744 78.0
Sp4g20340 Schrenkiella parvula HOM05D004503 ORTHO05D005460 0.0e+00 1174.5 744 77.8
Carub.0004s1999 Capsella rubella HOM05D004503 ORTHO05D005460 0.0e+00 1174.1 744 77.3
QL01p017640 Quercus lobata HOM05D004503 ORTHO05D005460 0.0e+00 1174.1 792 75.3
PSO675G5402 Papaver somniferum HOM05D004503 ORTHO05D005460 0.0e+00 1173.7 727 78.8
A03p21010 Brassica napus HOM05D004503 ORTHO05D005460 0.0e+00 1172.9 744 77.2
BraA03t11340Z Brassica rapa HOM05D004503 ORTHO05D005460 0.0e+00 1172.9 744 77.2
FAN02G3131 Fragaria x ananassa HOM05D004503 ORTHO05D005460 0.0e+00 1172.9 802 73.3
Nn4g24335 Nelumbo nucifera HOM05D004503 ORTHO05D005460 0.0e+00 1169.8 726 78.8
Aa31LG5G23690 Aethionema arabicum HOM05D004503 ORTHO05D005460 0.0e+00 1169.5 744 76.7
EL10Ac1g01630 Beta vulgaris HOM05D004503 ORTHO05D005460 0.0e+00 1169.1 730 78.4
Migut.M00558 Erythranthe guttata HOM05D004503 ORTHO05D005460 0.0e+00 1169.1 726 78.0
FAN09G1308 Fragaria x ananassa HOM05D004503 ORTHO05D005460 0.0e+00 1169.1 802 72.9
AL4G35000 Arabidopsis lyrata HOM05D004503 ORTHO05D005460 0.0e+00 1166.8 744 77.0
Sc09g0009430 Simmondsia chinensis HOM05D004503 ORTHO05D005460 0.0e+00 1166.8 730 78.2
MSTRG.6739 Avicennia marina HOM05D004503 ORTHO05D005460 0.0e+00 1164.8 726 78.4
Manes.02G088300 Manihot esculenta HOM05D004503 ORTHO05D005460 0.0e+00 1164.8 732 79.2
AT2G38020 Arabidopsis thaliana HOM05D004503 ORTHO05D005460 0.0e+00 1162.5 744 76.5
SGA_v2.0_scaffold70G23615 Striga asiatica HOM05D004503 ORTHO05D005460 0.0e+00 1153.3 749 75.3
CSS0024997 Camellia sinensis var. sinensis HOM05D004503 ORTHO05D005460 0.0e+00 1152.1 741 78.4
ECA233G4498 Erigeron canadensis HOM05D004503 ORTHO05D005460 0.0e+00 1151.3 729 77.2
Cc05_g09730 Coffea canephora HOM05D004503 ORTHO05D005460 0.0e+00 1150.2 726 77.4
HPP92_024264 Vanilla planifolia HOM05D004503 ORTHO05D005460 0.0e+00 1144.4 726 76.6
AUR62026613 Chenopodium quinoa HOM05D004503 ORTHO05D005460 0.0e+00 1144.0 729 77.0
Rhsim12G0009900 Rhododendron simsii HOM05D004503 ORTHO05D005460 0.0e+00 1143.6 711 80.5
AUR62034921 Chenopodium quinoa HOM05D004503 ORTHO05D005460 0.0e+00 1142.5 729 77.0
Hund26670 Selenicereus undatus HOM05D004503 ORTHO05D005460 0.0e+00 1122.8 831 68.7
SEGI_01586 Sequoiadendron giganteum HOM05D004503 ORTHO05D005460 0.0e+00 1095.1 723 72.9
Gohir.D07G189800 Gossypium hirsutum HOM05D004503 ORTHO05D005460 0.0e+00 1091.3 644 82.6
HPP92_024256 Vanilla planifolia HOM05D004503 ORTHO05D005460 0.0e+00 1085.5 726 73.6
ATR0772G123 Amborella trichopoda HOM05D004503 ORTHO05D005460 0.0e+00 1082.8 739 71.0
PSO063G7036 Papaver somniferum HOM05D004503 ORTHO05D005460 5.6e-285 984.2 628 76.6
DCAR_013322 Daucus carota HOM05D004503 ORTHO05D005460 1.5e-277 959.5 725 68.0
Ah.05g168350 Amaranthus hybridus HOM05D004503 ORTHO05D005460 5.6e-277 957.6 729 67.2
Mapoly0052s0038 Marchantia polymorpha HOM05D004503 ORTHO05D005460 8.7e-270 933.7 725 61.8
vmacro23147 Vaccinium macrocarpon HOM05D004503 ORTHO05D005460 2.1e-263 912.5 731 67.4
Pp3c13_19740 Physcomitrium patens HOM05D004503 ORTHO05D005460 6.0e-263 911.0 723 61.3
Os01g0666800 Oryza sativa ssp. japonica HOM05D004503 ORTHO05D005460 9.0e-259 897.1 767 61.1
Cfa009838 Carpinus fangiana HOM05D004503 ORTHO05D005460 1.5e-258 896.3 733 64.8
BcaNung06337 Brassica carinata HOM05D004503 ORTHO05D005460 7.4e-253 877.5 684 65.8
SMO358G0621 Selaginella moellendorffii HOM05D004503 ORTHO05D005460 6.2e-252 874.4 723 58.5
Haze_23205 Corylus avellana HOM05D004503 ORTHO05D005460 2.4e-251 872.5 1023 50.1
SHI12362 Sapria himalayana HOM05D004503 ORTHO05D005460 8.7e-246 854.0 605 69.8
BcaB01g03734 Brassica carinata HOM05D004503 ORTHO05D005460 3.7e-236 822.0 575 73.6
MBI10_g21107_MAGBIO Magnolia biondii HOM05D004503 ORTHO05D005460 2.4e-227 792.7 737 60.8
Nitab4.5_0027860g0010 Nicotiana tabacum HOM05D004503 ORTHO05D005460 6.1e-215 751.5 477 77.6
MBI10_g05864_MAGBIO Magnolia biondii HOM05D004503 ORTHO05D005460 4.5e-194 682.2 606 60.4
BcaC01g05574 Brassica carinata HOM05D004503 ORTHO05D005460 1.6e-191 673.7 458 74.2
PGSC0003DMG400017305 Solanum tuberosum HOM05D004503 ORTHO05D005460 5.7e-189 665.2 410 78.0
Oeu010987.1 Olea europaea HOM05D004503 ORTHO05D005460 1.8e-158 563.9 361 75.1
CDE04G0954 Ceratophyllum demersum HOM05D004503 ORTHO05D005460 5.8e-149 532.3 312 84.0
Oeu020048.5 Olea europaea HOM05D004503 ORTHO05D005460 1.9e-144 517.3 350 75.4
PRCOL_00002554 Prasinoderma coloniale HOM05D004503 ORTHO05D005460 1.2e-138 498.0 761 39.2
CBR_g46726 Chara braunii HOM05D004503 ORTHO05D005460 1.3e-135 488.0 734 39.2
TPR.G16790 Trifolium pratense HOM05D004503 ORTHO05D005460 2.1e-130 470.7 436 56.9
BcaB02g09224 Brassica carinata HOM05D004503 ORTHO05D005460 3.4e-125 453.4 598 47.0
Cfa025981 Carpinus fangiana HOM05D004503 ORTHO05D005460 1.0e-116 425.2 732 35.1
AagrBONN_evm.TU.Sc2ySwM_368.858 Anthoceros agrestis HOM05D004503 ORTHO05D005460 1.2e-114 418.3 332 58.4
Nitab4.5_0010124g0010 Nicotiana tabacum HOM05D004503 ORTHO05D005460 7.4e-112 409.1 248 83.9
TPR.G25270 Trifolium pratense HOM05D004503 ORTHO05D005460 9.7e-112 408.7 223 90.1
MBI10_g02225_MAGBIO Magnolia biondii HOM05D004503 ORTHO05D005460 4.0e-97 360.1 265 66.8
Cre03.g199311 Chlamydomonas reinhardtii HOM05D004503 ORTHO05D005460 2.8e-95 354.0 885 30.2
Actinidia25072 Actinidia chinensis HOM05D004503 ORTHO05D005460 2.7e-85 320.9 258 65.9
BcaB01g03733 Brassica carinata HOM05D004503 ORTHO05D005460 1.8e-81 308.1 158 86.7
Sabra02G0047100 Salix brachista HOM05D004503 ORTHO05D005460 2.0e-80 304.7 218 69.3
AL3G43330 Arabidopsis lyrata HOM05D004503 ORTHO05D005460 1.6e-66 258.5 255 56.9
AagrBONN_evm.TU.Sc2ySwM_368.859 Anthoceros agrestis HOM05D004503 ORTHO05D005460 3.5e-61 240.7 212 54.2
PGR042G2164 Punica granatum HOM05D004503 ORTHO05D005460 4.7e-50 203.8 112 90.2
TPR.G20801 Trifolium pratense HOM05D004503 ORTHO05D005460 5.1e-44 183.7 97 88.7
AagrBONN_evm.TU.Sc2ySwM_117.438 Anthoceros agrestis HOM05D004503 ORTHO05D005460 9.3e-38 162.9 200 44.5
Lsat_1_v5_gn_8_146460 Lactuca sativa HOM05D004503 ORTHO05D005460 9.3e-38 162.9 101 78.2
Lsat_1_v5_gn_2_4101 Lactuca sativa HOM05D004503 ORTHO05D005460 1.5e-35 155.6 108 67.6
Lsat_1_v5_gn_3_97321 Lactuca sativa HOM05D004503 ORTHO05D005460 7.6e-32 143.3 98 72.4
FvH4_6g38010 Fragaria vesca HOM05D004503 ORTHO05D005460 9.9e-32 142.9 168 50.6
Lsat_1_v5_gn_9_81860 Lactuca sativa HOM05D004503 ORTHO05D005460 9.9e-32 142.9 95 72.6
Lsat_1_v5_gn_1_120320 Lactuca sativa HOM05D004503 ORTHO05D005460 1.6e-29 135.6 94 69.1
Lsat_1_v5_gn_9_107141 Lactuca sativa HOM05D004503 ORTHO05D005460 1.6e-29 135.6 85 76.5
Lsat_1_v5_gn_5_109060 Lactuca sativa HOM05D004503 ORTHO05D005460 2.7e-29 134.8 99 71.7
Lsat_1_v5_gn_9_102961 Lactuca sativa HOM05D004503 ORTHO05D005460 3.0e-28 131.3 91 69.2
Nitab4.5_0010753g0030 Nicotiana tabacum HOM05D004503 ORTHO05D005460 3.9e-28 131.0 125 55.2
Lsat_1_v5_gn_4_94880 Lactuca sativa HOM05D001336 ORTHO05D001211 5.1e-28 130.6 87 72.4
Lsat_1_v5_gn_2_120 Lactuca sativa HOM05D003203 ORTHO05D003526 2.5e-27 128.3 113 61.1
Lsat_1_v5_gn_6_107780 Lactuca sativa HOM05D004503 ORTHO05D003526 5.6e-27 127.1 96 68.8
Nitab4.5_0010753g0010 Nicotiana tabacum HOM05D004503 ORTHO05D005460 9.6e-27 126.3 187 46.0
Lsat_1_v5_gn_0_13460 Lactuca sativa HOM05D003536 ORTHO05D004233 1.6e-26 125.6 100 67.0
MBI10_g02227_MAGBIO Magnolia biondii HOM05D004503 ORTHO05D005460 2.1e-26 125.2 125 59.2
Lsat_1_v5_gn_1_93381 Lactuca sativa HOM05D003203 ORTHO05D003526 1.4e-25 122.5 103 65.0
Lsat_1_v5_gn_2_105761 Lactuca sativa HOM05D001000 ORTHO05D001896 6.4e-23 113.6 152 39.5
Lsat_1_v5_gn_4_100901 Lactuca sativa HOM05D004503 ORTHO05D005460 8.4e-23 113.2 68 76.5
Lsat_1_v5_gn_8_98160 Lactuca sativa HOM05D004503 ORTHO05D005460 1.4e-22 112.5 96 63.5
Lsat_1_v5_gn_2_36800 Lactuca sativa HOM05D004503 ORTHO05D005460 1.6e-21 109.0 107 54.2
Lsat_1_v5_gn_8_75300 Lactuca sativa HOM05D004503 ORTHO05D005460 4.8e-18 97.4 115 48.7
Lsat_1_v5_gn_8_13240 Lactuca sativa HOM05D004503 ORTHO05D005460 1.1e-17 96.3 82 64.6
Lsat_1_v5_gn_2_51260 Lactuca sativa HOM05D001336 ORTHO05D001211 2.0e-16 92.0 52 78.8
Lsat_1_v5_gn_8_84700 Lactuca sativa HOM05D004503 ORTHO05D005460 5.8e-16 90.5 52 76.9
C04p09630 Brassica napus HOM05D004503 ORTHO05D005460 8.4e-15 86.7 87 55.2
BolC4t22570H Brassica oleracea HOM05D004503 ORTHO05D005460 8.4e-15 86.7 87 55.2
Lsat_1_v5_gn_5_27580 Lactuca sativa HOM05D005974 ORTHO05D007201 4.3e-11 74.3 197 30.5
Lsat_1_v5_gn_4_85140 Lactuca sativa HOM05D003203 ORTHO05D003526 7.4e-11 73.6 37 94.6
Lsat_1_v5_gn_8_136521 Lactuca sativa HOM05D004503 ORTHO05D000404 1.3e-10 72.8 61 62.3
Rhsim08G0005700 Rhododendron simsii HOM05D004503 ORTHO05D037450 1.1e-09 69.7 85 50.6
MBI10_g02226_MAGBIO Magnolia biondii HOM05D004503 ORTHO05D005460 3.2e-06 58.2 37 70.3
Lsat_1_v5_gn_5_118461 Lactuca sativa HOM05D001336 ORTHO05D001211 4.2e-06 57.8 41 70.7
Rhsim07G0116000 Rhododendron simsii HOM05D000382 ORTHO05D037450 5.5e-06 57.4 82 46.3


User provided reference genes

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