Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.A01448 Eucalyptus grandis HOM05D005626 ORTHO05D007372 2.6e-242 842.0 560 100.0
Atru.chr12.2245_Atru.chr12.2244 Acer truncatum HOM05D005626 ORTHO05D007372 8.9e-126 454.9 493 63.1
Manes.06G012351 Manihot esculenta HOM05D005626 ORTHO05D007372 3.4e-125 453.0 512 62.9
EL10Ac3g05260 Beta vulgaris HOM05D005626 ORTHO05D007372 8.6e-121 438.3 495 68.3
Migut.F00199 Erythranthe guttata HOM05D005626 ORTHO05D007372 1.6e-119 434.1 471 63.7
CANSAT21G0821 Cannabis sativa HOM05D005626 ORTHO05D007372 1.4e-115 421.0 510 57.3
Dinv29256 Davidia involucrata HOM05D005626 ORTHO05D007372 2.4e-115 420.2 532 63.5
MBI07_g24765_MAGBIO Magnolia biondii HOM05D005626 ORTHO05D007372 4.1e-115 419.5 501 54.1
Sabra15G0008900 Salix brachista HOM05D005626 ORTHO05D007372 1.7e-113 414.1 481 70.1
Potri.015G010800 Populus trichocarpa HOM05D005626 ORTHO05D007372 2.3e-113 413.7 529 65.4
Cc02_g01370 Coffea canephora HOM05D005626 ORTHO05D007372 4.9e-108 396.0 502 49.8
Ciclev10020013m.g Citrus clementina HOM05D005626 ORTHO05D007372 2.3e-105 387.1 471 66.9
Actinidia18659 Actinidia chinensis HOM05D005626 ORTHO05D007372 3.3e-104 383.3 525 57.5
Sopen03g022800 Solanum pennellii HOM05D005626 ORTHO05D007372 3.6e-103 379.8 503 53.1
CAN.G481.28 Capsicum annuum HOM05D005626 ORTHO05D007372 6.2e-103 379.0 513 51.1
Nitab4.5_0005491g0050 Nicotiana tabacum HOM05D005626 ORTHO05D007372 1.4e-102 377.9 492 54.1
Solyc03g082990.3 Solanum lycopersicum HOM05D005626 ORTHO05D007372 2.4e-102 377.1 503 52.9
CDE02G3804 Ceratophyllum demersum HOM05D005626 ORTHO05D007372 2.0e-101 374.0 466 54.5
Peaxi162Scf00740g00226 Petunia axillaris HOM05D005626 ORTHO05D007372 2.6e-101 373.6 486 55.3
Cfa016215 Carpinus fangiana HOM05D005626 ORTHO05D007372 2.9e-100 370.2 525 52.6
Thecc.03G201200 Theobroma cacao HOM05D005626 ORTHO05D007372 2.9e-100 370.2 511 58.9
GSVIVG01038569001 Vitis vinifera HOM05D005626 ORTHO05D007372 5.4e-99 365.9 520 52.3
Ah.07g205460 Amaranthus hybridus HOM05D005626 ORTHO05D007372 7.1e-99 365.5 544 59.7
PGR042G1168 Punica granatum HOM05D005626 ORTHO05D007372 1.7e-97 360.9 571 52.4
FAN10G2571 Fragaria x ananassa HOM05D005626 ORTHO05D007372 3.0e-97 360.1 507 62.5
Gohir.D09G179900 Gossypium hirsutum HOM05D005626 ORTHO05D007372 8.7e-97 358.6 502 55.8
Nn1g00302 Nelumbo nucifera HOM05D005626 ORTHO05D007372 3.3e-96 356.7 502 59.8
CsaV3_5G000430 Cucumis sativus L. HOM05D005626 ORTHO05D007372 5.6e-96 355.9 470 64.0
ClCG01G000360 Citrullus lanatus HOM05D005626 ORTHO05D007372 7.3e-96 355.5 470 64.5
CiPaw.06G045100 Carya illinoinensis HOM05D005626 ORTHO05D007372 1.1e-94 351.7 527 58.3
MD01G1222800 Malus domestica HOM05D005626 ORTHO05D007372 1.4e-94 351.3 479 58.2
Oeu010695.1 Olea europaea HOM05D005626 ORTHO05D007372 1.4e-94 351.3 467 55.9
Lj8A623T21 Lonicera japonica HOM05D005626 ORTHO05D007372 1.2e-93 348.2 466 63.3
Lalb_Chr08g0240121 Lupinus albus HOM05D005626 ORTHO05D007372 2.0e-93 347.4 467 61.9
Prupe.2G313200 Prunus persica HOM05D005626 ORTHO05D007372 2.0e-93 347.4 479 54.1
Duzib084G0104 Durio zibethinus HOM05D005626 ORTHO05D007372 3.4e-93 346.7 512 60.7
unitig_92.g28249 Utricularia gibba HOM05D005626 ORTHO05D007372 3.4e-93 346.7 479 53.2
Gorai.006G201900 Gossypium raimondii HOM05D005626 ORTHO05D007372 4.5e-93 346.3 534 49.1
Lj1g0019302 Lotus japonicus HOM05D005626 ORTHO05D007372 3.8e-92 343.2 510 57.3
AUR62006074 Chenopodium quinoa HOM05D005626 ORTHO05D007372 4.9e-92 342.8 471 51.0
TAR375G0360 Trochodendron aralioides HOM05D005626 ORTHO05D007372 6.4e-92 342.4 523 55.4
MELO3C005892.2 Cucumis melo HOM05D005626 ORTHO05D007372 8.4e-92 342.0 470 63.2
PSO063G0511 Papaver somniferum HOM05D005626 ORTHO05D007372 4.2e-91 339.7 467 61.7
arahy.Tifrunner.gnm1.ann1.ULB6CG Arachis hypogaea HOM05D005626 ORTHO05D007372 1.6e-90 337.8 485 50.5
QL09p007984 Quercus lobata HOM05D005626 ORTHO05D007372 2.1e-90 337.4 525 53.5
Hund11648 Selenicereus undatus HOM05D005626 ORTHO05D007372 2.7e-90 337.0 491 51.1
MSTRG.27018 Avicennia marina HOM05D005626 ORTHO05D007372 3.5e-90 336.7 455 58.2
Hma1.2p1_2307F.1_g319430 Hydrangea macrophylla HOM05D005626 ORTHO05D007372 1.0e-89 335.1 507 59.0
THA.LOC104799967 Tarenaya hassleriana HOM05D005626 ORTHO05D007372 1.0e-89 335.1 528 47.0
AT5G53080 Arabidopsis thaliana HOM05D005626 ORTHO05D007372 1.3e-89 334.7 507 57.4
arahy.Tifrunner.gnm1.ann1.1DU7LF Arachis hypogaea HOM05D005626 ORTHO05D007372 5.1e-89 332.8 492 49.0
PSO170G4344 Papaver somniferum HOM05D005626 ORTHO05D007372 1.1e-88 331.6 479 59.9
Hma1.2p1_0591F.1_g185250 Hydrangea macrophylla HOM05D005626 ORTHO05D007372 2.5e-88 330.5 500 59.4
Aa31LG3G9390 Aethionema arabicum HOM05D005626 ORTHO05D007372 7.4e-88 328.9 497 57.9
Aqoxy5G04311 Aquilegia oxysepala HOM05D005626 ORTHO05D007372 2.1e-87 327.4 490 56.7
CSS0044766 Camellia sinensis var. sinensis HOM05D005626 ORTHO05D007372 4.0e-86 323.2 470 52.6
FAN06G4319 Fragaria x ananassa HOM05D005626 ORTHO05D007372 2.0e-85 320.9 507 52.7
Thhalv10013148m.g Eutrema salsugineum HOM05D005626 ORTHO05D007372 2.6e-85 320.5 467 61.2
FvH4_7g31990 Fragaria vesca HOM05D005626 ORTHO05D007372 3.4e-85 320.1 507 52.7
COL.COLO4_16792 Corchorus olitorius HOM05D005626 ORTHO05D007032 1.7e-84 317.8 490 59.2
FAN03G2656 Fragaria x ananassa HOM05D005626 ORTHO05D007032 1.7e-84 317.8 520 40.2
Cpa.g.sc3.101 Carica papaya HOM05D005626 ORTHO05D007372 8.4e-84 315.5 490 59.4
AUR62035551 Chenopodium quinoa HOM05D005626 ORTHO05D007372 8.4e-84 315.5 510 44.7
Lsat_1_v5_gn_9_49841 Lactuca sativa HOM05D005626 ORTHO05D007372 8.4e-84 315.5 471 57.5
AL8G27710 Arabidopsis lyrata HOM05D005626 ORTHO05D007372 4.2e-83 313.2 507 57.2
TWI39G0896 Tripterygium wilfordii HOM05D005626 ORTHO05D007372 4.2e-83 313.2 473 55.0
Sed0007830 Sechium edule HOM05D005626 ORTHO05D007372 1.2e-82 311.6 471 60.3
Sc25g0000940 Simmondsia chinensis HOM05D005626 ORTHO05D007372 1.2e-82 311.6 425 56.9
Sp6g15250 Schrenkiella parvula HOM05D005626 ORTHO05D007372 2.1e-82 310.8 509 56.6
Carub.0008s1328 Capsella rubella HOM05D005626 ORTHO05D007372 2.7e-82 310.5 507 56.0
VMungo1309G2515 Vigna mungo HOM05D005626 ORTHO05D007372 1.3e-81 308.1 461 58.6
Glyma.04G234300 Glycine max HOM05D005626 ORTHO05D007372 6.7e-81 305.8 504 56.0
RcHm_v2.0_Chr1g0381501 Rosa chinensis HOM05D005626 ORTHO05D007372 6.7e-81 305.8 507 50.9
ECA232G0910 Erigeron canadensis HOM05D005626 ORTHO05D007372 8.7e-81 305.4 471 58.4
C02p18690 Brassica napus HOM05D005626 ORTHO05D007372 4.3e-80 303.1 474 58.6
SalBow4G1489 Salvia bowleyana HOM05D005626 ORTHO05D007372 7.4e-80 302.4 423 48.2
BolC2t08014H Brassica oleracea HOM05D005626 ORTHO05D007372 1.6e-79 301.2 498 56.6
CARHR266100 Cardamine hirsuta HOM05D005626 ORTHO05D007372 2.8e-79 300.4 506 55.9
Manes.06G011400 Manihot esculenta HOM05D005626 ORTHO05D007372 2.8e-79 300.4 425 57.4
TPR.G33639 Trifolium pratense HOM05D005626 ORTHO05D007372 2.8e-79 300.4 502 48.4
arahy.Tifrunner.gnm1.ann1.DCMH6Q Arachis hypogaea HOM05D005626 ORTHO05D007372 1.8e-78 297.7 455 48.8
A02p11310 Brassica napus HOM05D005626 ORTHO05D007372 2.4e-78 297.4 504 55.6
MBI07_g43862_MAGBIO Magnolia biondii HOM05D005626 ORTHO05D007372 1.2e-77 295.0 464 40.3
BraA02t06193Z Brassica rapa HOM05D005626 ORTHO05D007372 1.5e-77 294.7 504 55.4
BcaC03g14458 Brassica carinata HOM05D005626 ORTHO05D007372 2.9e-76 290.4 463 58.7
Phvul.009G051300 Phaseolus vulgaris HOM05D005626 ORTHO05D007372 1.0e-73 282.0 506 52.0
arahy.Tifrunner.gnm1.ann1.CHU3M4 Arachis hypogaea HOM05D005626 ORTHO05D007372 2.3e-73 280.8 479 45.7
HanXRQChr15g0485681 Helianthus annuus HOM05D005626 ORTHO05D007372 1.1e-72 278.5 471 56.3
Ca_16720_v3 Cicer arietinum L. HOM05D005626 ORTHO05D007372 1.5e-72 278.1 516 48.8
CSS0003989 Camellia sinensis var. sinensis HOM05D005626 ORTHO05D007372 1.6e-71 274.6 536 35.8
HPP92_005288 Vanilla planifolia HOM05D005626 ORTHO05D007372 1.1e-70 271.9 396 50.3
Haze_00226 Corylus avellana HOM05D005626 ORTHO05D007372 1.8e-70 271.2 509 46.6
Medtr3g091780 Medicago truncatula HOM05D005626 ORTHO05D007372 5.3e-70 269.6 477 54.3
DCAR_010593 Daucus carota HOM05D005626 ORTHO05D007372 2.2e-68 264.2 195 67.2
Psat5g076080 Pisum sativum HOM05D005626 ORTHO05D007372 2.2e-68 264.2 524 45.4
CSS0000100 Camellia sinensis var. sinensis HOM05D005626 ORTHO05D007372 8.5e-68 262.3 495 36.8
SGA_v2.0_scaffold192G40528 Striga asiatica HOM05D005626 ORTHO05D007032 1.9e-67 261.2 459 55.3
BcaB05g22010 Brassica carinata HOM05D005626 ORTHO05D007372 2.1e-66 257.7 490 34.5
PGSC0003DMG400018528 Solanum tuberosum HOM05D005626 ORTHO05D007372 7.9e-66 255.8 211 62.1
BcaB05g22007 Brassica carinata HOM05D005626 ORTHO05D007372 2.3e-65 254.2 486 47.5
QL09p008055 Quercus lobata HOM05D005626 ORTHO05D007372 1.7e-60 238.0 485 35.3
Gohir.A09G185000 Gossypium hirsutum HOM05D005626 ORTHO05D007372 1.8e-54 218.0 297 63.6
FAN10G0040 Fragaria x ananassa HOM05D005626 ORTHO05D009683 8.8e-49 199.1 437 33.4
Lj1A1021T49 Lonicera japonica HOM05D005626 ORTHO05D007372 2.8e-47 194.1 195 52.8
ATR0730G125 Amborella trichopoda HOM05D005626 ORTHO05D007372 1.0e-44 185.7 326 54.9
Manes.06G012101 Manihot esculenta HOM05D005626 ORTHO05D007372 3.1e-38 164.1 178 54.5
Mapoly0001s0084 Marchantia polymorpha HOM05D005626 ORTHO05D007372 7.7e-37 159.5 459 31.6
MBI19_g14786_MAGBIO Magnolia biondii HOM05D005626 ORTHO05D007372 2.9e-36 157.5 137 56.2
Glyma.06G130267 Glycine max HOM05D005626 ORTHO05D007372 2.7e-34 151.0 115 62.6
Mapoly0045s0029 Marchantia polymorpha HOM05D005626 ORTHO05D007372 5.2e-33 146.7 366 45.9
Glyma.06G130333 Glycine max HOM05D005626 ORTHO05D007372 1.6e-29 135.2 125 52.0
BcaB01g04214 Brassica carinata HOM05D005626 ORTHO05D007372 1.0e-28 132.5 156 49.4
MD07G1293400 Malus domestica HOM05D005626 ORTHO05D007372 1.1e-27 129.0 120 63.3
Manes.06G011750 Manihot esculenta HOM05D005626 ORTHO05D007372 1.0e-25 122.5 205 60.5
QL09p008133 Quercus lobata HOM05D005626 ORTHO05D007372 4.0e-25 120.6 82 70.7
MBI19_g14787_MAGBIO Magnolia biondii HOM05D005626 ORTHO05D007372 2.2e-23 114.8 77 71.4
BcaB01g04215 Brassica carinata HOM05D005626 ORTHO05D007372 9.2e-22 109.4 162 39.5
Pp3c5_16230 Physcomitrium patens HOM05D005626 ORTHO05D007372 4.5e-21 107.1 348 29.0
FAN10G4199 Fragaria x ananassa HOM05D005626 ORTHO05D007372 1.3e-20 105.5 119 52.1
Pp3c5_16240 Physcomitrium patens HOM05D005626 ORTHO05D007372 6.6e-20 103.2 314 51.3
Lj1C1019T10 Lonicera japonica HOM05D005626 ORTHO05D007372 2.1e-18 98.2 84 59.5
AagrBONN_evm.TU.Sc2ySwM_369.443 Anthoceros agrestis HOM05D005626 ORTHO05D007372 8.9e-17 92.8 415 47.5
CSS0006573 Camellia sinensis var. sinensis HOM05D005626 ORTHO05D007372 1.7e-15 88.6 85 51.8
Cfa019813 Carpinus fangiana HOM05D005626 ORTHO05D007372 1.0e-12 79.3 62 61.3
Pp3c23_14930 Physcomitrium patens HOM05D005626 ORTHO05D007372 1.7e-12 78.6 143 35.0
Actinidia06140 Actinidia chinensis HOM05D005626 ORTHO05D007372 6.6e-12 76.6 60 60.0
Pp3c16_9300 Physcomitrium patens HOM05D005626 ORTHO05D007372 6.6e-12 76.6 144 32.6
Pp3c8_12740 Physcomitrium patens HOM05D005626 ORTHO05D007372 1.5e-11 75.5 146 31.5
QL09p008114 Quercus lobata HOM05D005626 ORTHO05D007372 8.9e-09 66.2 52 57.7
MD07G1293500 Malus domestica HOM05D005626 ORTHO05D007372 3.4e-08 64.3 54 59.3


User provided reference genes

Program Settings