Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.A00265 Eucalyptus grandis HOM05D004387 ORTHO05D005218 2.6e-147 525.4 267 100.0
Eucgr.A00267 Eucalyptus grandis HOM05D004387 ORTHO05D005218 1.6e-104 383.3 269 79.2
Eucgr.A00059 Eucalyptus grandis HOM05D004387 ORTHO05D005218 1.2e-101 373.6 311 71.7
Sabra06G0035900 Salix brachista HOM05D004387 ORTHO05D005218 7.6e-83 311.2 318 59.1
Manes.08G050500 Manihot esculenta HOM05D004387 ORTHO05D005218 4.9e-82 308.5 311 59.5
Potri.016G055600 Populus trichocarpa HOM05D004387 ORTHO05D005218 1.1e-81 307.4 311 60.1
Eucgr.A00063 Eucalyptus grandis HOM05D004387 ORTHO05D005218 4.2e-81 305.4 200 84.0
QL02p103266 Quercus lobata HOM05D004387 ORTHO05D005218 1.6e-80 303.5 240 69.2
Potri.006G051200 Populus trichocarpa HOM05D004387 ORTHO05D005218 2.7e-80 302.8 239 69.5
Eucgr.A00266 Eucalyptus grandis HOM05D004387 ORTHO05D005218 1.3e-79 300.4 285 64.9
Cc07_g20870 Coffea canephora HOM05D004387 ORTHO05D005218 2.3e-79 299.7 305 58.0
Dinv39602 Davidia involucrata HOM05D004387 ORTHO05D005218 3.0e-79 299.3 311 58.8
Duzib093G1767 Durio zibethinus HOM05D004387 ORTHO05D005218 3.0e-79 299.3 311 57.2
GSVIVG01033276001 Vitis vinifera HOM05D004387 ORTHO05D005218 3.0e-79 299.3 313 58.8
Thecc.05G153400 Theobroma cacao HOM05D004387 ORTHO05D005218 5.1e-79 298.5 311 57.6
PGR142G2016 Punica granatum HOM05D004387 ORTHO05D005218 8.7e-79 297.7 316 59.5
Cfa006454 Carpinus fangiana HOM05D004387 ORTHO05D005218 1.9e-78 296.6 239 68.2
TWI77G0383 Tripterygium wilfordii HOM05D004387 ORTHO05D005218 1.9e-78 296.6 239 69.0
DCAR_013603 Daucus carota HOM05D004387 ORTHO05D005218 2.5e-78 296.2 311 58.2
MELO3C023136.2 Cucumis melo HOM05D004387 ORTHO05D005218 4.3e-78 295.4 312 57.1
Cfa016818 Carpinus fangiana HOM05D004387 ORTHO05D005218 1.6e-77 293.5 239 66.9
Atru.chr1.1097 Acer truncatum HOM05D004387 ORTHO05D005218 2.8e-77 292.7 311 56.6
Lju124A41T49 Lonicera japonica HOM05D004387 ORTHO05D005218 2.8e-77 292.7 311 57.2
Dinv12482 Davidia involucrata HOM05D004387 ORTHO05D005218 3.6e-77 292.4 239 67.8
CAN.G128.9 Capsicum annuum HOM05D004387 ORTHO05D005218 4.8e-77 292.0 311 57.9
CSS0003189 Camellia sinensis var. sinensis HOM05D004387 ORTHO05D005218 6.2e-77 291.6 311 57.6
CiPaw.09G038200 Carya illinoinensis HOM05D004387 ORTHO05D005218 8.1e-77 291.2 239 68.2
COL.COLO4_28283 Corchorus olitorius HOM05D004387 ORTHO05D005218 1.4e-76 290.4 311 56.9
Oeu017945.1 Olea europaea HOM05D004387 ORTHO05D005218 1.4e-76 290.4 311 56.3
Eucgr.A00069 Eucalyptus grandis HOM05D004387 ORTHO05D005218 2.4e-76 289.7 319 58.3
TWI74G1664 Tripterygium wilfordii HOM05D004387 ORTHO05D005218 2.4e-76 289.7 239 66.9
CsaV3_4G011700 Cucumis sativus L. HOM05D004387 ORTHO05D005218 4.0e-76 288.9 240 66.2
Sopen10g030740 Solanum pennellii HOM05D004387 ORTHO05D005218 9.0e-76 287.7 311 56.6
Rhsim09G0155500 Rhododendron simsii HOM05D004387 ORTHO05D005218 1.2e-75 287.3 373 50.1
Ciclev10005512m.g Citrus clementina HOM05D004387 ORTHO05D005218 2.6e-75 286.2 311 56.6
Actinidia38546 Actinidia chinensis HOM05D004387 ORTHO05D005218 3.4e-75 285.8 239 67.4
Sed0012804 Sechium edule HOM05D004387 ORTHO05D005218 3.4e-75 285.8 241 64.7
Migut.K00090 Erythranthe guttata HOM05D004387 ORTHO05D005218 5.8e-75 285.0 312 56.1
Actinidia17236 Actinidia chinensis HOM05D004387 ORTHO05D005218 7.6e-75 284.6 311 56.9
Lalb_Chr20g0110501 Lupinus albus HOM05D004387 ORTHO05D005218 9.9e-75 284.3 239 65.3
Peaxi162Scf00354g00222 Petunia axillaris HOM05D004387 ORTHO05D005218 9.9e-75 284.3 311 56.9
TAR633G2397 Trochodendron aralioides HOM05D004387 ORTHO05D005218 9.9e-75 284.3 239 66.5
ECA248G3203 Erigeron canadensis HOM05D004387 ORTHO05D005218 1.3e-74 283.9 310 56.1
Nitab4.5_0004587g0010 Nicotiana tabacum HOM05D004387 ORTHO05D005218 2.2e-74 283.1 239 67.4
CARHR052860 Cardamine hirsuta HOM05D004387 ORTHO05D005218 2.9e-74 282.7 242 65.7
Ah.13g076470 Amaranthus hybridus HOM05D004387 ORTHO05D005218 4.9e-74 282.0 250 62.0
Solyc06g075390.4 Solanum lycopersicum HOM05D004387 ORTHO05D005218 4.9e-74 282.0 310 55.2
Psat6g037480 Pisum sativum HOM05D004387 ORTHO05D005218 6.4e-74 281.6 239 65.3
PGSC0003DMG400007507 Solanum tuberosum HOM05D004387 ORTHO05D005218 8.4e-74 281.2 311 55.3
Aqoxy5G00267 Aquilegia oxysepala HOM05D004387 ORTHO05D005218 1.1e-73 280.8 240 66.2
Gohir.D01G090600 Gossypium hirsutum HOM05D004387 ORTHO05D005218 1.1e-73 280.8 239 64.4
Glyma.08G246800 Glycine max HOM05D004387 ORTHO05D005218 1.4e-73 280.4 239 64.0
Gohir.A01G009000 Gossypium hirsutum HOM05D004387 ORTHO05D005218 1.4e-73 280.4 239 64.4
Lalb_Chr01g0017301 Lupinus albus HOM05D004387 ORTHO05D005218 1.9e-73 280.0 239 64.0
AUR62026038 Chenopodium quinoa HOM05D004387 ORTHO05D005218 2.4e-73 279.6 285 56.8
CAN.G1001.5 Capsicum annuum HOM05D004387 ORTHO05D005218 3.2e-73 279.3 311 55.3
Sopen06g031800 Solanum pennellii HOM05D004387 ORTHO05D005218 3.2e-73 279.3 310 54.8
AT1G60080 Arabidopsis thaliana HOM05D004387 ORTHO05D005218 1.2e-72 277.3 242 64.0
Gohir.A02G158900 Gossypium hirsutum HOM05D004387 ORTHO05D005218 1.2e-72 277.3 239 64.4
RcHm_v2.0_Chr3g0482341 Rosa chinensis HOM05D004387 ORTHO05D005218 1.2e-72 277.3 239 65.7
MBI11_g09466_MAGBIO Magnolia biondii HOM05D004387 ORTHO05D005218 1.6e-72 276.9 302 56.0
HanXRQChr01g0008751 Helianthus annuus HOM05D004387 ORTHO05D005218 2.1e-72 276.6 226 65.9
Hund05284 Selenicereus undatus HOM05D004387 ORTHO05D005218 2.1e-72 276.6 311 53.7
HanXRQChr06g0178491 Helianthus annuus HOM05D004387 ORTHO05D005218 1.0e-71 274.2 226 67.3
Lsat_1_v5_gn_5_161440 Lactuca sativa HOM05D004387 ORTHO05D005218 1.0e-71 274.2 239 64.0
CANSAT21G1698 Cannabis sativa HOM05D004387 ORTHO05D005218 2.3e-71 273.1 236 64.8
AUR62024448 Chenopodium quinoa HOM05D004387 ORTHO05D005218 5.1e-71 271.9 239 61.5
Lj6g0019382 Lotus japonicus HOM05D004387 ORTHO05D005218 6.6e-71 271.6 239 62.8
MSTRG.10813 Avicennia marina HOM05D004387 ORTHO05D005218 8.7e-71 271.2 239 64.0
Phvul.011G181200 Phaseolus vulgaris HOM05D004387 ORTHO05D005218 8.7e-71 271.2 239 62.3
Sp2g04520 Schrenkiella parvula HOM05D004387 ORTHO05D005218 8.7e-71 271.2 245 64.9
TPR.G24500 Trifolium pratense HOM05D004387 ORTHO05D005218 8.7e-71 271.2 239 61.9
THA.LOC104823663 Tarenaya hassleriana HOM05D004387 ORTHO05D005218 1.5e-70 270.4 244 63.1
VMungo0331G1303 Vigna mungo HOM05D004387 ORTHO05D005218 2.5e-70 269.6 239 61.9
FAN02G2904 Fragaria x ananassa HOM05D004387 ORTHO05D005218 3.3e-70 269.2 254 60.6
Glyma.14G145600 Glycine max HOM05D004387 ORTHO05D005218 3.3e-70 269.2 239 63.6
Medtr1g007060 Medicago truncatula HOM05D004387 ORTHO05D005218 3.3e-70 269.2 241 62.7
FAN14G1242 Fragaria x ananassa HOM05D004387 ORTHO05D005218 4.3e-70 268.9 254 60.6
FvH4_6g23810 Fragaria vesca HOM05D004387 ORTHO05D005218 7.3e-70 268.1 239 63.6
Thhalv10023611m.g Eutrema salsugineum HOM05D004387 ORTHO05D005218 9.6e-70 267.7 242 62.8
Carub.0002s0514 Capsella rubella HOM05D004387 ORTHO05D005218 1.3e-69 267.3 242 62.0
FAN05G1657 Fragaria x ananassa HOM05D004387 ORTHO05D005218 2.8e-69 266.2 254 60.6
AL2G16570 Arabidopsis lyrata HOM05D004387 ORTHO05D005218 3.6e-69 265.8 242 62.0
SGA_v2.0_scaffold273G46436 Striga asiatica HOM05D004387 ORTHO05D005218 1.8e-68 263.5 312 51.9
Aa31LG2G10160 Aethionema arabicum HOM05D004387 ORTHO05D005218 2.4e-68 263.1 241 63.1
CSS0010572 Camellia sinensis var. sinensis HOM05D004387 ORTHO05D005218 2.4e-68 263.1 241 62.2
BraA09t37397Z Brassica rapa HOM05D004387 ORTHO05D005218 6.9e-68 261.5 241 62.7
MD12G1073800 Malus domestica HOM05D004387 ORTHO05D005218 9.0e-68 261.2 239 62.3
Nitab4.5_0009442g0010 Nicotiana tabacum HOM05D004387 ORTHO05D005218 9.0e-68 261.2 228 65.8
PSO170G6628 Papaver somniferum HOM05D004387 ORTHO05D005218 9.0e-68 261.2 232 65.1
BNapus_Darmor_BZH_scaffold_155p00060 Brassica napus HOM05D004387 ORTHO05D005218 1.5e-67 260.4 241 62.2
C09p22030 Brassica napus HOM05D004387 ORTHO05D005218 1.5e-67 260.4 241 62.2
BolC9t55109H Brassica oleracea HOM05D004387 ORTHO05D005218 1.5e-67 260.4 241 62.2
BcaB07g31201 Brassica carinata HOM05D004387 ORTHO05D005218 2.0e-67 260.0 241 61.8
A09p17690 Brassica napus HOM05D004387 ORTHO05D005218 2.0e-67 260.0 241 62.2
BcaC04g22217 Brassica carinata HOM05D004387 ORTHO05D005218 3.4e-67 259.2 241 61.8
PSO357G0544 Papaver somniferum HOM05D004387 ORTHO05D005218 3.4e-67 259.2 232 64.2
Aqoxy2G02875 Aquilegia oxysepala HOM05D004387 ORTHO05D005218 4.5e-67 258.8 311 52.1
SGA_v2.0_scaffold94G28486 Striga asiatica HOM05D004387 ORTHO05D005218 5.8e-67 258.5 311 51.1
Prupe.7G061000 Prunus persica HOM05D004387 ORTHO05D005218 7.6e-67 258.1 239 62.3
Ca_03365_v3 Cicer arietinum L. HOM05D004387 ORTHO05D005218 2.2e-66 256.5 239 60.3
HPP92_019752 Vanilla planifolia HOM05D004387 ORTHO05D005218 1.9e-65 253.4 229 61.1
Cpa.g.sc3.336 Carica papaya HOM05D004387 ORTHO05D005218 5.5e-65 251.9 239 61.5
Gorai.002G116000 Gossypium raimondii HOM05D004387 ORTHO05D005218 1.6e-64 250.4 242 60.3
Nn2g15223 Nelumbo nucifera HOM05D004387 ORTHO05D005218 2.7e-64 249.6 281 55.2
vmacro09074 Vaccinium macrocarpon HOM05D004387 ORTHO05D005218 3.5e-64 249.2 305 52.1
FAN09G3586 Fragaria x ananassa HOM05D004387 ORTHO05D005218 6.7e-63 245.0 251 58.6
CDE04G2438 Ceratophyllum demersum HOM05D004387 ORTHO05D005218 2.5e-62 243.0 239 58.2
CSS0027602 Camellia sinensis var. sinensis HOM05D004387 ORTHO05D005218 1.6e-61 240.4 249 57.4
Lj4g0008518 Lotus japonicus HOM05D004387 ORTHO05D005218 2.1e-61 240.0 239 58.2
CSS0024704 Camellia sinensis var. sinensis HOM05D004387 ORTHO05D005218 2.2e-58 229.9 264 53.0
PGSC0003DMG400023725 Solanum tuberosum HOM05D004387 ORTHO05D005218 4.2e-57 225.7 262 55.3
arahy.Tifrunner.gnm1.ann1.02RJAW Arachis hypogaea HOM05D004387 ORTHO05D005218 2.1e-56 223.4 241 57.3
arahy.Tifrunner.gnm1.ann1.QD816I Arachis hypogaea HOM05D004387 ORTHO05D005218 6.0e-56 221.9 241 57.3
ClCG04G000130 Citrullus lanatus HOM05D004387 ORTHO05D005218 2.5e-54 216.5 186 65.6
Gorai.002G010400 Gossypium raimondii HOM05D004387 ORTHO05D005218 1.6e-53 213.8 240 54.6
EL10Ac3g07090 Beta vulgaris HOM05D004387 ORTHO05D005218 1.4e-52 210.7 296 43.2
ATR0626G351 Amborella trichopoda HOM05D004387 ORTHO05D005218 3.1e-52 209.5 230 53.0
Zm00001eb175450 Zea mays HOM05D004387 ORTHO05D005218 2.6e-51 206.5 236 51.7
Os11g0311300 Oryza sativa ssp. japonica HOM05D004387 ORTHO05D005218 7.6e-51 204.9 219 54.8
Hma1.2p1_0953F.1_g241060 Hydrangea macrophylla HOM05D004387 ORTHO05D005218 8.4e-50 201.4 240 53.8
Nitab4.5_0005483g0010 Nicotiana tabacum HOM05D004387 ORTHO05D005218 4.2e-49 199.1 269 48.7
Pp3c19_14820 Physcomitrium patens HOM05D004387 ORTHO05D005218 2.5e-46 189.9 237 44.7
Zm00001eb036840 Zea mays HOM05D004387 ORTHO05D005218 7.4e-46 188.3 304 42.1
Gohir.D01G090850 Gossypium hirsutum HOM05D004387 ORTHO05D005218 4.5e-43 179.1 182 60.4
Mapoly0071s0030 Marchantia polymorpha HOM05D004387 ORTHO05D005218 2.2e-42 176.8 249 45.0
Gohir.D01G008666 Gossypium hirsutum HOM05D004387 ORTHO05D005218 5.0e-42 175.6 170 59.4
CSS0001525 Camellia sinensis var. sinensis HOM05D004387 ORTHO05D005218 1.1e-41 174.5 195 55.9
Cc06_g17120 Coffea canephora HOM05D004387 ORTHO05D005218 7.2e-41 171.8 123 70.7
SMO169G0201 Selaginella moellendorffii HOM05D004387 ORTHO05D005218 1.0e-39 167.9 229 43.7
Sc13g0001760 Simmondsia chinensis HOM05D004387 ORTHO05D005218 1.8e-36 157.1 141 63.1
unitig_46.g18442 Utricularia gibba HOM05D004387 ORTHO05D005218 3.1e-36 156.4 156 54.5
Eucgr.A00263 Eucalyptus grandis HOM05D004387 ORTHO05D005218 2.6e-35 153.3 174 58.6
Zm00001eb317600 Zea mays HOM05D004387 ORTHO05D005218 2.5e-33 146.7 126 59.5
EL10Ac3g05398 Beta vulgaris HOM05D004387 ORTHO05D005218 6.1e-32 142.1 153 53.6
Glyma.18G267600 Glycine max HOM05D004387 ORTHO05D005218 1.4e-31 141.0 141 55.3
Haze_19856 Corylus avellana HOM05D004387 ORTHO05D005218 1.1e-30 137.9 226 41.6
SEGI_29832 Sequoiadendron giganteum HOM05D004387 ORTHO05D005218 4.8e-29 132.5 120 54.2
Zm00001eb161840 Zea mays HOM05D004387 ORTHO05D005218 5.9e-27 125.6 187 41.2
Cc06_g17110 Coffea canephora HOM05D004387 ORTHO05D005218 1.0e-26 124.8 174 49.4
Gohir.D01G090350 Gossypium hirsutum HOM05D004387 ORTHO05D005218 1.0e-26 124.8 95 69.5
Sc13g0001750 Simmondsia chinensis HOM05D004387 ORTHO05D005218 9.4e-25 118.2 93 67.7
Solyc10g080130.3 Solanum lycopersicum HOM05D004387 ORTHO05D005218 2.7e-24 116.7 174 47.1
CBR_g20981 Chara braunii HOM05D004387 ORTHO05D005218 4.7e-24 115.9 215 36.7
CSS0046204 Camellia sinensis var. sinensis HOM05D004387 ORTHO05D005218 1.5e-22 110.9 147 53.1
Haze_01634 Corylus avellana HOM05D004387 ORTHO05D005218 2.4e-20 103.6 70 74.3
unitig_46.g18443 Utricularia gibba HOM05D004387 ORTHO05D005218 6.5e-18 95.5 102 52.9
Cre10.g440900 Chlamydomonas reinhardtii HOM05D004387 ORTHO05D005218 5.5e-17 92.4 259 27.8
ClCG04G000120 Citrullus lanatus HOM05D004387 ORTHO05D005218 1.5e-14 84.3 127 44.1
AagrBONN_evm.TU.Sc2ySwM_362.2801 Anthoceros agrestis HOM05D004387 ORTHO05D005218 5.4e-12 75.9 155 34.8
BcaC09g49432 Brassica carinata HOM05D004387 ORTHO05D005218 4.5e-11 72.8 70 58.6
C01p36790 Brassica napus HOM05D004387 ORTHO05D005218 4.5e-11 72.8 70 58.6
BolC1t03637H Brassica oleracea HOM05D004387 ORTHO05D005218 4.5e-11 72.8 70 58.6
CSS0026699 Camellia sinensis var. sinensis HOM05D004387 ORTHO05D005218 1.3e-10 71.2 57 66.7
Dinv26619 Davidia involucrata HOM05D002238 ORTHO05D001984 1.2e-08 64.7 131 30.5
CBR_g41407 Chara braunii HOM05D004387 ORTHO05D005218 2.1e-08 63.9 64 51.6
Gohir.D01G091400 Gossypium hirsutum HOM05D004387 ORTHO05D005218 2.1e-08 63.9 74 52.7
CDE07G0852 Ceratophyllum demersum HOM05D004387 ORTHO05D005218 8.0e-08 62.0 53 58.5
Nn7g36292 Nelumbo nucifera HOM05D004387 ORTHO05D005218 1.4e-07 61.2 70 45.7
VMungo0647G0871 Vigna mungo HOM05D000829 ORTHO05D001984 2.3e-07 60.5 176 30.1
ECA238G4099 Erigeron canadensis HOM05D002238 ORTHO05D001984 3.0e-07 60.1 176 31.2
Phvul.004G077200 Phaseolus vulgaris HOM05D002238 ORTHO05D001984 3.0e-07 60.1 176 30.1
Phvul.008G288600 Phaseolus vulgaris HOM05D002238 ORTHO05D001984 8.8e-07 58.5 176 30.7
RcHm_v2.0_Chr2g0156191 Rosa chinensis HOM05D002238 ORTHO05D001984 1.2e-06 58.2 176 29.0
CSS0035678 Camellia sinensis var. sinensis HOM05D002238 ORTHO05D001984 1.5e-06 57.8 126 28.6
HanXRQChr17g0537591 Helianthus annuus HOM05D002238 ORTHO05D001984 1.5e-06 57.8 176 29.5
Glyma.02G070100 Glycine max HOM05D002238 ORTHO05D001984 2.0e-06 57.4 176 29.5
Glyma.16G151700 Glycine max HOM05D002238 ORTHO05D001984 2.0e-06 57.4 176 29.5
CSS0015125 Camellia sinensis var. sinensis HOM05D002238 ORTHO05D001984 2.6e-06 57.0 126 28.6
AUR62023617 Chenopodium quinoa HOM05D002238 ORTHO05D001984 2.6e-06 57.0 126 27.0
ECA236G2666 Erigeron canadensis HOM05D002238 ORTHO05D001984 2.6e-06 57.0 181 28.2
RcHm_v2.0_Chr4g0385201 Rosa chinensis HOM05D002238 ORTHO05D001984 2.6e-06 57.0 176 28.4
Ciclev10016158m.g Citrus clementina HOM05D002238 ORTHO05D001984 4.4e-06 56.2 176 29.5
Prupe.3G198900 Prunus persica HOM05D002238 ORTHO05D001984 4.4e-06 56.2 176 29.0
PGR044G1809 Punica granatum HOM05D002238 ORTHO05D001984 7.5e-06 55.5 126 27.8
Rhsim01G0200000 Rhododendron simsii HOM05D002238 ORTHO05D001984 7.5e-06 55.5 140 28.6
BcaC05g29568 Brassica carinata HOM05D002238 ORTHO05D001984 9.8e-06 55.1 199 27.1
FAN09G1531 Fragaria x ananassa HOM05D002238 ORTHO05D001984 9.8e-06 55.1 176 28.4
Sc04g0009070 Simmondsia chinensis HOM05D002238 ORTHO05D001984 9.8e-06 55.1 126 27.0


User provided reference genes

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