Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.A00063 Eucalyptus grandis HOM05D004387 ORTHO05D005218 3.7e-126 454.9 235 100.0
Eucgr.A00059 Eucalyptus grandis HOM05D004387 ORTHO05D005218 2.4e-96 355.9 276 74.3
Eucgr.A00267 Eucalyptus grandis HOM05D004387 ORTHO05D005218 9.0e-96 354.0 247 80.6
Eucgr.A00265 Eucalyptus grandis HOM05D004387 ORTHO05D005218 1.8e-80 303.1 200 84.0
Dinv39602 Davidia involucrata HOM05D004387 ORTHO05D005218 4.0e-80 302.0 276 64.1
Potri.006G051200 Populus trichocarpa HOM05D004387 ORTHO05D005218 3.4e-79 298.9 276 62.3
TWI77G0383 Tripterygium wilfordii HOM05D004387 ORTHO05D005218 5.8e-79 298.1 276 63.0
Manes.08G050500 Manihot esculenta HOM05D004387 ORTHO05D005218 1.7e-78 296.6 276 61.6
Sabra06G0035900 Salix brachista HOM05D004387 ORTHO05D005218 1.7e-78 296.6 289 59.9
Duzib093G1767 Durio zibethinus HOM05D004387 ORTHO05D005218 4.9e-78 295.0 275 61.5
GSVIVG01033276001 Vitis vinifera HOM05D004387 ORTHO05D005218 6.5e-78 294.7 284 61.6
Dinv12482 Davidia involucrata HOM05D004387 ORTHO05D005218 1.9e-77 293.1 276 61.6
Thecc.05G153400 Theobroma cacao HOM05D004387 ORTHO05D005218 2.5e-77 292.7 275 61.1
COL.COLO4_28283 Corchorus olitorius HOM05D004387 ORTHO05D005218 4.2e-77 292.0 270 61.9
Actinidia17236 Actinidia chinensis HOM05D004387 ORTHO05D005218 9.3e-77 290.8 275 62.9
Lju124A41T49 Lonicera japonica HOM05D004387 ORTHO05D005218 1.2e-76 290.4 274 61.3
Potri.016G055600 Populus trichocarpa HOM05D004387 ORTHO05D005218 1.2e-76 290.4 276 60.9
Cfa006454 Carpinus fangiana HOM05D004387 ORTHO05D005218 1.6e-76 290.0 276 60.5
PGR142G2016 Punica granatum HOM05D004387 ORTHO05D005218 2.1e-76 289.7 281 62.3
Atru.chr1.1097 Acer truncatum HOM05D004387 ORTHO05D005218 2.7e-76 289.3 276 60.5
DCAR_013603 Daucus carota HOM05D004387 ORTHO05D005218 2.7e-76 289.3 276 60.9
CSS0003189 Camellia sinensis var. sinensis HOM05D004387 ORTHO05D005218 3.5e-76 288.9 276 61.6
CAN.G128.9 Capsicum annuum HOM05D004387 ORTHO05D005218 3.5e-76 288.9 276 61.6
Oeu017945.1 Olea europaea HOM05D004387 ORTHO05D005218 4.6e-76 288.5 276 60.5
QL02p103266 Quercus lobata HOM05D004387 ORTHO05D005218 4.6e-76 288.5 283 59.7
MELO3C023136.2 Cucumis melo HOM05D004387 ORTHO05D005218 6.0e-76 288.1 277 60.3
TWI74G1664 Tripterygium wilfordii HOM05D004387 ORTHO05D005218 6.0e-76 288.1 276 60.9
Peaxi162Scf00354g00222 Petunia axillaris HOM05D004387 ORTHO05D005218 7.9e-76 287.7 274 63.5
Actinidia38546 Actinidia chinensis HOM05D004387 ORTHO05D005218 1.3e-75 287.0 276 62.0
Cfa016818 Carpinus fangiana HOM05D004387 ORTHO05D005218 1.3e-75 287.0 276 59.4
Nitab4.5_0004587g0010 Nicotiana tabacum HOM05D004387 ORTHO05D005218 3.9e-75 285.4 276 62.0
CsaV3_4G011700 Cucumis sativus L. HOM05D004387 ORTHO05D005218 5.1e-75 285.0 277 59.6
CiPaw.09G038200 Carya illinoinensis HOM05D004387 ORTHO05D005218 6.7e-75 284.6 276 60.1
ECA248G3203 Erigeron canadensis HOM05D004387 ORTHO05D005218 6.7e-75 284.6 272 61.0
Cc07_g20870 Coffea canephora HOM05D004387 ORTHO05D005218 1.1e-74 283.9 276 60.5
Lalb_Chr01g0017301 Lupinus albus HOM05D004387 ORTHO05D005218 1.1e-74 283.9 276 59.4
RcHm_v2.0_Chr3g0482341 Rosa chinensis HOM05D004387 ORTHO05D005218 1.1e-74 283.9 273 61.2
Sopen10g030740 Solanum pennellii HOM05D004387 ORTHO05D005218 1.1e-74 283.9 276 61.2
Sed0012804 Sechium edule HOM05D004387 ORTHO05D005218 1.9e-74 283.1 278 59.0
Glyma.08G246800 Glycine max HOM05D004387 ORTHO05D005218 5.7e-74 281.6 276 58.7
Lalb_Chr20g0110501 Lupinus albus HOM05D004387 ORTHO05D005218 5.7e-74 281.6 276 59.4
TAR633G2397 Trochodendron aralioides HOM05D004387 ORTHO05D005218 7.4e-74 281.2 276 59.1
PGSC0003DMG400007507 Solanum tuberosum HOM05D004387 ORTHO05D005218 9.6e-74 280.8 276 60.5
Solyc06g075390.4 Solanum lycopersicum HOM05D004387 ORTHO05D005218 1.3e-73 280.4 276 60.1
CAN.G1001.5 Capsicum annuum HOM05D004387 ORTHO05D005218 1.6e-73 280.0 276 60.5
Ciclev10005512m.g Citrus clementina HOM05D004387 ORTHO05D005218 2.8e-73 279.3 276 59.8
Sopen06g031800 Solanum pennellii HOM05D004387 ORTHO05D005218 2.8e-73 279.3 276 60.1
Nn2g15223 Nelumbo nucifera HOM05D004387 ORTHO05D005218 4.8e-73 278.5 253 60.9
Psat6g037480 Pisum sativum HOM05D004387 ORTHO05D005218 4.8e-73 278.5 276 58.7
Migut.K00090 Erythranthe guttata HOM05D004387 ORTHO05D005218 8.2e-73 277.7 277 59.6
Gohir.A01G009000 Gossypium hirsutum HOM05D004387 ORTHO05D005218 1.1e-72 277.3 273 58.6
SGA_v2.0_scaffold94G28486 Striga asiatica HOM05D004387 ORTHO05D005218 1.1e-72 277.3 265 60.0
Gohir.D01G090600 Gossypium hirsutum HOM05D004387 ORTHO05D005218 1.4e-72 276.9 273 58.2
Lsat_1_v5_gn_5_161440 Lactuca sativa HOM05D004387 ORTHO05D005218 2.4e-72 276.2 267 60.3
Lj6g0019382 Lotus japonicus HOM05D004387 ORTHO05D005218 4.1e-72 275.4 276 57.6
CANSAT21G1698 Cannabis sativa HOM05D004387 ORTHO05D005218 5.3e-72 275.0 270 61.1
Aqoxy5G00267 Aquilegia oxysepala HOM05D004387 ORTHO05D005218 6.9e-72 274.6 276 58.7
FvH4_6g23810 Fragaria vesca HOM05D004387 ORTHO05D005218 9.0e-72 274.2 273 59.3
Gohir.A02G158900 Gossypium hirsutum HOM05D004387 ORTHO05D005218 9.0e-72 274.2 273 58.2
Glyma.14G145600 Glycine max HOM05D004387 ORTHO05D005218 1.2e-71 273.9 271 58.7
Hund05284 Selenicereus undatus HOM05D004387 ORTHO05D005218 1.2e-71 273.9 276 57.2
HanXRQChr01g0008751 Helianthus annuus HOM05D004387 ORTHO05D005218 2.0e-71 273.1 263 60.1
AUR62024448 Chenopodium quinoa HOM05D004387 ORTHO05D005218 2.6e-71 272.7 276 56.5
Eucgr.A00069 Eucalyptus grandis HOM05D004387 ORTHO05D005218 2.6e-71 272.7 291 61.9
Medtr1g007060 Medicago truncatula HOM05D004387 ORTHO05D005218 4.5e-71 271.9 278 56.8
SGA_v2.0_scaffold273G46436 Striga asiatica HOM05D004387 ORTHO05D005218 4.5e-71 271.9 272 58.8
MBI11_g09466_MAGBIO Magnolia biondii HOM05D004387 ORTHO05D005218 5.9e-71 271.6 267 59.2
TPR.G24500 Trifolium pratense HOM05D004387 ORTHO05D005218 7.6e-71 271.2 275 56.4
HanXRQChr06g0178491 Helianthus annuus HOM05D004387 ORTHO05D005218 1.0e-70 270.8 263 61.2
MD12G1073800 Malus domestica HOM05D004387 ORTHO05D005218 1.0e-70 270.8 272 57.7
Phvul.011G181200 Phaseolus vulgaris HOM05D004387 ORTHO05D005218 2.2e-70 269.6 276 56.9
Rhsim09G0155500 Rhododendron simsii HOM05D004387 ORTHO05D005218 2.2e-70 269.6 344 50.9
MSTRG.10813 Avicennia marina HOM05D004387 ORTHO05D005218 2.9e-70 269.2 276 58.7
Ca_03365_v3 Cicer arietinum L. HOM05D004387 ORTHO05D005218 5.0e-70 268.5 267 58.8
Eucgr.A00266 Eucalyptus grandis HOM05D004387 ORTHO05D005218 8.4e-70 267.7 263 63.1
FAN02G2904 Fragaria x ananassa HOM05D004387 ORTHO05D005218 8.4e-70 267.7 294 55.1
VMungo0331G1303 Vigna mungo HOM05D004387 ORTHO05D005218 8.4e-70 267.7 276 56.5
Nitab4.5_0009442g0010 Nicotiana tabacum HOM05D004387 ORTHO05D005218 1.4e-69 266.9 265 61.1
FAN14G1242 Fragaria x ananassa HOM05D004387 ORTHO05D005218 2.5e-69 266.2 294 55.1
Aqoxy2G02875 Aquilegia oxysepala HOM05D004387 ORTHO05D005218 4.2e-69 265.4 269 58.4
Ah.13g076470 Amaranthus hybridus HOM05D004387 ORTHO05D005218 5.5e-69 265.0 291 53.6
FAN05G1657 Fragaria x ananassa HOM05D004387 ORTHO05D005218 7.2e-69 264.6 294 55.1
Prupe.7G061000 Prunus persica HOM05D004387 ORTHO05D005218 1.6e-68 263.5 272 58.1
CARHR052860 Cardamine hirsuta HOM05D004387 ORTHO05D005218 2.7e-68 262.7 279 56.3
PSO170G6628 Papaver somniferum HOM05D004387 ORTHO05D005218 3.5e-68 262.3 269 59.1
PSO357G0544 Papaver somniferum HOM05D004387 ORTHO05D005218 7.9e-68 261.2 269 58.0
THA.LOC104823663 Tarenaya hassleriana HOM05D004387 ORTHO05D005218 7.9e-68 261.2 281 56.2
AT1G60080 Arabidopsis thaliana HOM05D004387 ORTHO05D005218 5.1e-67 258.5 279 55.9
vmacro09074 Vaccinium macrocarpon HOM05D004387 ORTHO05D005218 6.7e-67 258.1 329 52.0
Aa31LG2G10160 Aethionema arabicum HOM05D004387 ORTHO05D005218 1.5e-66 256.9 278 56.5
Carub.0002s0514 Capsella rubella HOM05D004387 ORTHO05D005218 3.7e-65 252.3 279 54.8
Thhalv10023611m.g Eutrema salsugineum HOM05D004387 ORTHO05D005218 1.1e-64 250.8 279 55.2
Gorai.002G116000 Gossypium raimondii HOM05D004387 ORTHO05D005218 5.3e-64 248.4 279 55.9
Sp2g04520 Schrenkiella parvula HOM05D004387 ORTHO05D005218 9.0e-64 247.7 281 55.2
FAN09G3586 Fragaria x ananassa HOM05D004387 ORTHO05D005218 1.2e-63 247.3 286 53.8
BNapus_Darmor_BZH_scaffold_155p00060 Brassica napus HOM05D004387 ORTHO05D005218 2.0e-63 246.5 278 54.7
C09p22030 Brassica napus HOM05D004387 ORTHO05D005218 2.0e-63 246.5 278 54.7
BolC9t55109H Brassica oleracea HOM05D004387 ORTHO05D005218 2.0e-63 246.5 278 54.7
AL2G16570 Arabidopsis lyrata HOM05D004387 ORTHO05D005218 2.6e-63 246.1 271 55.0
A09p17690 Brassica napus HOM05D004387 ORTHO05D005218 2.6e-63 246.1 278 54.7
BraA09t37397Z Brassica rapa HOM05D004387 ORTHO05D005218 2.6e-63 246.1 278 55.0
HPP92_019752 Vanilla planifolia HOM05D004387 ORTHO05D005218 3.4e-63 245.7 265 54.0
BcaB07g31201 Brassica carinata HOM05D004387 ORTHO05D005218 4.5e-63 245.4 278 54.3
Lj4g0008518 Lotus japonicus HOM05D004387 ORTHO05D005218 4.5e-63 245.4 276 53.6
BcaC04g22217 Brassica carinata HOM05D004387 ORTHO05D005218 1.3e-62 243.8 278 54.3
CSS0010572 Camellia sinensis var. sinensis HOM05D004387 ORTHO05D005218 1.7e-62 243.4 283 54.8
Cpa.g.sc3.336 Carica papaya HOM05D004387 ORTHO05D005218 1.4e-61 240.4 276 54.3
Nitab4.5_0005483g0010 Nicotiana tabacum HOM05D004387 ORTHO05D005218 4.2e-61 238.8 242 58.3
CDE04G2438 Ceratophyllum demersum HOM05D004387 ORTHO05D005218 1.2e-60 237.3 272 52.6
CSS0024704 Camellia sinensis var. sinensis HOM05D004387 ORTHO05D005218 3.6e-60 235.7 295 52.2
AUR62026038 Chenopodium quinoa HOM05D004387 ORTHO05D005218 7.9e-60 234.6 250 54.0
CSS0027602 Camellia sinensis var. sinensis HOM05D004387 ORTHO05D005218 4.8e-57 225.3 277 52.7
ATR0626G351 Amborella trichopoda HOM05D004387 ORTHO05D005218 6.9e-56 221.5 266 50.4
PGSC0003DMG400023725 Solanum tuberosum HOM05D004387 ORTHO05D005218 7.7e-55 218.0 223 61.0
arahy.Tifrunner.gnm1.ann1.QD816I Arachis hypogaea HOM05D004387 ORTHO05D005218 1.0e-54 217.6 283 50.5
arahy.Tifrunner.gnm1.ann1.02RJAW Arachis hypogaea HOM05D004387 ORTHO05D005218 1.3e-54 217.2 283 50.2
ClCG04G000130 Citrullus lanatus HOM05D004387 ORTHO05D005218 3.8e-54 215.7 181 64.6
EL10Ac3g07090 Beta vulgaris HOM05D004387 ORTHO05D005218 7.2e-53 211.5 339 41.6
Gorai.002G010400 Gossypium raimondii HOM05D004387 ORTHO05D005218 9.4e-53 211.1 270 50.7
Os11g0311300 Oryza sativa ssp. japonica HOM05D004387 ORTHO05D005218 3.9e-51 205.7 251 50.6
Zm00001eb175450 Zea mays HOM05D004387 ORTHO05D005218 6.7e-51 204.9 263 48.3
Hma1.2p1_0953F.1_g241060 Hydrangea macrophylla HOM05D004387 ORTHO05D005218 6.3e-49 198.4 205 58.0
Pp3c19_14820 Physcomitrium patens HOM05D004387 ORTHO05D005218 2.6e-47 193.0 274 40.9
SMO169G0201 Selaginella moellendorffii HOM05D004387 ORTHO05D005218 1.3e-46 190.7 264 42.0
Zm00001eb036840 Zea mays HOM05D004387 ORTHO05D005218 1.7e-46 190.3 259 45.9
Mapoly0071s0030 Marchantia polymorpha HOM05D004387 ORTHO05D005218 3.2e-45 186.0 284 41.9
Gohir.D01G090850 Gossypium hirsutum HOM05D004387 ORTHO05D005218 1.5e-42 177.2 176 58.0
CSS0001525 Camellia sinensis var. sinensis HOM05D004387 ORTHO05D005218 2.6e-42 176.4 195 54.9
Cc06_g17120 Coffea canephora HOM05D004387 ORTHO05D005218 5.3e-40 168.7 120 68.3
Gohir.D01G008666 Gossypium hirsutum HOM05D004387 ORTHO05D005218 3.5e-39 166.0 204 51.5
unitig_46.g18442 Utricularia gibba HOM05D004387 ORTHO05D005218 2.5e-37 159.8 157 54.1
Zm00001eb317600 Zea mays HOM05D004387 ORTHO05D005218 1.8e-35 153.7 118 62.7
Sc13g0001760 Simmondsia chinensis HOM05D004387 ORTHO05D005218 4.0e-35 152.5 178 56.2
Eucgr.A00263 Eucalyptus grandis HOM05D004387 ORTHO05D005218 2.8e-33 146.4 145 64.8
Glyma.18G267600 Glycine max HOM05D004387 ORTHO05D005218 1.3e-30 137.5 178 48.9
Haze_19856 Corylus avellana HOM05D004387 ORTHO05D005218 2.2e-30 136.7 235 43.8
SEGI_29832 Sequoiadendron giganteum HOM05D004387 ORTHO05D005218 2.2e-30 136.7 113 55.8
Zm00001eb161840 Zea mays HOM05D004387 ORTHO05D005218 3.6e-28 129.4 106 61.3
Gohir.D01G090350 Gossypium hirsutum HOM05D004387 ORTHO05D005218 4.7e-28 129.0 95 67.4
Sc13g0001750 Simmondsia chinensis HOM05D004387 ORTHO05D005218 6.1e-28 128.6 93 68.8
Cc06_g17110 Coffea canephora HOM05D004387 ORTHO05D005218 1.7e-25 120.6 145 55.9
EL10Ac3g05398 Beta vulgaris HOM05D004387 ORTHO05D005218 3.8e-22 109.4 117 54.7
Solyc10g080130.3 Solanum lycopersicum HOM05D004387 ORTHO05D005218 1.9e-21 107.1 145 51.7
Cre10.g440900 Chlamydomonas reinhardtii HOM05D004387 ORTHO05D005218 5.6e-21 105.5 301 29.9
CBR_g20981 Chara braunii HOM05D004387 ORTHO05D005218 2.1e-20 103.6 177 38.4
Haze_01634 Corylus avellana HOM05D004387 ORTHO05D005218 1.4e-19 100.9 70 71.4
AagrBONN_evm.TU.Sc2ySwM_362.2801 Anthoceros agrestis HOM05D004387 ORTHO05D005218 4.1e-16 89.4 192 33.9
unitig_46.g18443 Utricularia gibba HOM05D004387 ORTHO05D005218 2.5e-13 80.1 145 44.1
ClCG04G000120 Citrullus lanatus HOM05D004387 ORTHO05D005218 1.0e-11 74.7 98 49.0
CBR_g41407 Chara braunii HOM05D004387 ORTHO05D005218 2.0e-10 70.5 64 50.0
CSS0026699 Camellia sinensis var. sinensis HOM05D004387 ORTHO05D005218 1.4e-08 64.3 122 45.1
Nn7g36292 Nelumbo nucifera HOM05D004387 ORTHO05D005218 1.4e-08 64.3 70 45.7
Phvul.002G034700 Phaseolus vulgaris HOM05D004058 ORTHO05D001984 1.4e-08 64.3 239 24.7
CSS0046204 Camellia sinensis var. sinensis HOM05D004387 ORTHO05D005218 4.1e-08 62.8 118 44.1
Zm00001eb243400 Zea mays HOM05D004058 ORTHO05D001984 5.4e-08 62.4 233 24.0
Os02g0550700 Oryza sativa ssp. japonica HOM05D004058 ORTHO05D001984 7.0e-08 62.0 233 25.3
ATR0752G201 Amborella trichopoda HOM05D004058 ORTHO05D001984 1.2e-07 61.2 234 25.2
Zm00001eb228810 Zea mays HOM05D002238 ORTHO05D001984 1.6e-07 60.8 232 25.4
BcaC09g49432 Brassica carinata HOM05D004387 ORTHO05D005218 2.0e-07 60.5 109 44.0
C01p36790 Brassica napus HOM05D004387 ORTHO05D005218 2.0e-07 60.5 109 44.0
BolC1t03637H Brassica oleracea HOM05D004387 ORTHO05D005218 2.0e-07 60.5 109 44.0
VMungo1215G2741 Vigna mungo HOM05D004058 ORTHO05D001984 2.0e-07 60.5 236 26.3
Zm00001eb228830 Zea mays HOM05D002238 ORTHO05D001984 2.0e-07 60.5 232 25.4
AagrBONN_evm.TU.Sc2ySwM_344.853 Anthoceros agrestis HOM05D004058 ORTHO05D001984 2.7e-07 60.1 217 25.8
CDE07G0852 Ceratophyllum demersum HOM05D004387 ORTHO05D005218 2.7e-07 60.1 45 62.2
Gohir.D01G091400 Gossypium hirsutum HOM05D004387 ORTHO05D005218 2.7e-07 60.1 68 52.9
Dinv26619 Davidia involucrata HOM05D002238 ORTHO05D001984 3.5e-07 59.7 130 28.5
SHI27493 Sapria himalayana HOM05D004058 ORTHO05D001984 3.5e-07 59.7 233 24.0
SMO364G0151 Selaginella moellendorffii HOM05D004058 ORTHO05D001984 4.6e-07 59.3 234 24.4
arahy.Tifrunner.gnm1.ann1.1PFQ5M Arachis hypogaea HOM05D004058 ORTHO05D001984 6.0e-07 58.9 234 23.5
arahy.Tifrunner.gnm1.ann1.KJN3LK Arachis hypogaea HOM05D004058 ORTHO05D001984 7.8e-07 58.5 234 23.5
Os12g0403800 Oryza sativa ssp. japonica HOM05D002238 ORTHO05D001984 1.0e-06 58.2 233 25.8
EL10Ac2g03220 Beta vulgaris HOM05D004058 ORTHO05D001984 1.3e-06 57.8 124 25.8
Hund05622 Selenicereus undatus HOM05D004058 ORTHO05D001984 1.3e-06 57.8 234 23.9
RcHm_v2.0_Chr2g0156191 Rosa chinensis HOM05D002238 ORTHO05D001984 5.0e-06 55.8 177 26.0
Potri.014G166200 Populus trichocarpa HOM05D002238 ORTHO05D001984 6.6e-06 55.5 179 25.7
Rhsim06G0175300 Rhododendron simsii HOM05D002238 ORTHO05D001984 6.6e-06 55.5 230 25.7
FAN02G1526 Fragaria x ananassa HOM05D002238 ORTHO05D001984 8.6e-06 55.1 233 24.9
Rhsim01G0200000 Rhododendron simsii HOM05D002238 ORTHO05D001984 8.6e-06 55.1 248 26.6
RcHm_v2.0_Chr4g0385201 Rosa chinensis HOM05D002238 ORTHO05D001984 8.6e-06 55.1 177 24.9


User provided reference genes

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