Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10As5g23498 Beta vulgaris HOM05D004330 ORTHO05D005182 0.0e+00 1332.4 691 100.0
AUR62024682 Chenopodium quinoa HOM05D004330 ORTHO05D005182 0.0e+00 1252.7 687 95.3
Ah.11g049400 Amaranthus hybridus HOM05D004330 ORTHO05D005182 0.0e+00 1237.6 687 93.6
Sc17g0000550 Simmondsia chinensis HOM05D004330 ORTHO05D005182 0.0e+00 1177.9 687 88.6
Actinidia16901 Actinidia chinensis HOM05D004330 ORTHO05D005182 0.0e+00 1151.0 686 85.4
Dinv22060 Davidia involucrata HOM05D004330 ORTHO05D005182 0.0e+00 1149.0 686 85.7
GSVIVG01012102001 Vitis vinifera HOM05D004330 ORTHO05D005182 0.0e+00 1148.3 686 84.7
Hma1.2p1_0016F.1_g011010 Hydrangea macrophylla HOM05D004330 ORTHO05D005182 0.0e+00 1143.6 687 85.2
Actinidia29358 Actinidia chinensis HOM05D004330 ORTHO05D005182 0.0e+00 1139.8 686 85.1
Thecc.08G188100 Theobroma cacao HOM05D004330 ORTHO05D005182 0.0e+00 1139.4 686 84.7
CSS0001083 Camellia sinensis var. sinensis HOM05D004330 ORTHO05D005182 0.0e+00 1134.0 686 84.1
Ciclev10019077m.g Citrus clementina HOM05D004330 ORTHO05D005182 0.0e+00 1133.2 686 84.7
Cpa.g.sc249.10 Carica papaya HOM05D004330 ORTHO05D005182 0.0e+00 1132.1 686 84.3
Lj5g0027584 Lotus japonicus HOM05D004330 ORTHO05D005182 0.0e+00 1131.3 686 83.8
Gorai.009G264800 Gossypium raimondii HOM05D004330 ORTHO05D005182 0.0e+00 1130.5 686 84.1
Prupe.1G566400 Prunus persica HOM05D004330 ORTHO05D005182 0.0e+00 1129.8 686 84.1
Gohir.D05G252400 Gossypium hirsutum HOM05D004330 ORTHO05D005182 0.0e+00 1129.4 686 84.0
Gohir.A05G251400 Gossypium hirsutum HOM05D004330 ORTHO05D005182 0.0e+00 1129.0 686 84.0
RcHm_v2.0_Chr6g0249411 Rosa chinensis HOM05D004330 ORTHO05D005182 0.0e+00 1128.6 686 84.4
Potri.006G027100 Populus trichocarpa HOM05D004330 ORTHO05D005182 0.0e+00 1128.2 687 84.4
Manes.15G103100 Manihot esculenta HOM05D004330 ORTHO05D005182 0.0e+00 1127.5 686 83.5
MD15G1440000 Malus domestica HOM05D004330 ORTHO05D005182 0.0e+00 1127.1 691 83.9
PGR031G1280 Punica granatum HOM05D004330 ORTHO05D005182 0.0e+00 1126.7 686 84.0
Eucgr.C04264 Eucalyptus grandis HOM05D004330 ORTHO05D005182 0.0e+00 1125.2 686 83.7
Nitab4.5_0000079g0120 Nicotiana tabacum HOM05D004330 ORTHO05D005182 0.0e+00 1124.4 687 82.7
Solyc02g094090.4 Solanum lycopersicum HOM05D004330 ORTHO05D005182 0.0e+00 1122.5 689 82.0
Sopen02g038710 Solanum pennellii HOM05D004330 ORTHO05D005182 0.0e+00 1121.7 689 82.0
Sabra06G0020300 Salix brachista HOM05D004330 ORTHO05D005182 0.0e+00 1120.9 687 83.8
Cfa008036 Carpinus fangiana HOM05D004330 ORTHO05D005182 0.0e+00 1120.5 686 83.7
MD08G1244900 Malus domestica HOM05D004330 ORTHO05D005182 0.0e+00 1120.5 687 83.6
arahy.Tifrunner.gnm1.ann1.7LJM3H Arachis hypogaea HOM05D004330 ORTHO05D005182 0.0e+00 1120.1 686 83.5
arahy.Tifrunner.gnm1.ann1.A4ASB6 Arachis hypogaea HOM05D004330 ORTHO05D005182 0.0e+00 1120.1 686 83.5
arahy.Tifrunner.gnm1.ann1.KU2W2N Arachis hypogaea HOM05D004330 ORTHO05D005182 0.0e+00 1120.1 686 83.5
Medtr1g079770 Medicago truncatula HOM05D004330 ORTHO05D005182 0.0e+00 1119.0 689 82.0
Phvul.006G106700 Phaseolus vulgaris HOM05D004330 ORTHO05D005182 0.0e+00 1117.1 686 83.1
Cc10_g16170 Coffea canephora HOM05D004330 ORTHO05D005182 0.0e+00 1116.7 689 83.0
Glyma.19G249400 Glycine max HOM05D004330 ORTHO05D005182 0.0e+00 1116.7 686 82.9
Lalb_Chr04g0261991 Lupinus albus HOM05D004330 ORTHO05D005182 0.0e+00 1116.3 686 82.9
VMungo0540G0979 Vigna mungo HOM05D004330 ORTHO05D005182 0.0e+00 1115.5 686 82.7
CAN.G473.93 Capsicum annuum HOM05D004330 ORTHO05D005182 0.0e+00 1114.8 687 82.0
Rhsim01G0101300 Rhododendron simsii HOM05D004330 ORTHO05D005182 0.0e+00 1114.0 697 82.6
CiPaw.03G012300 Carya illinoinensis HOM05D004330 ORTHO05D005182 0.0e+00 1113.6 686 82.9
Glyma.03G252000 Glycine max HOM05D004330 ORTHO05D005182 0.0e+00 1112.8 686 82.7
Nitab4.5_0007117g0020 Nicotiana tabacum HOM05D004330 ORTHO05D005182 0.0e+00 1112.8 687 82.0
FvH4_2g00140 Fragaria vesca HOM05D004330 ORTHO05D005182 0.0e+00 1111.7 686 83.1
HanXRQChr05g0150611 Helianthus annuus HOM05D004330 ORTHO05D005182 0.0e+00 1111.3 686 81.5
vmacro06107 Vaccinium macrocarpon HOM05D004330 ORTHO05D005182 0.0e+00 1109.4 715 80.3
DCAR_024855 Daucus carota HOM05D004330 ORTHO05D005182 0.0e+00 1107.8 709 81.1
QL09p001201 Quercus lobata HOM05D004330 ORTHO05D005182 0.0e+00 1107.4 685 82.9
BcaC08g46563 Brassica carinata HOM05D004330 ORTHO05D005182 0.0e+00 1106.3 686 81.3
C06p45370 Brassica napus HOM05D004330 ORTHO05D005182 0.0e+00 1106.3 686 81.3
FAN24G1765 Fragaria x ananassa HOM05D004330 ORTHO05D005182 0.0e+00 1106.3 690 82.8
CiPaw.04G008600 Carya illinoinensis HOM05D004330 ORTHO05D005182 0.0e+00 1105.9 686 83.4
Sp5g26470 Schrenkiella parvula HOM05D004330 ORTHO05D005182 0.0e+00 1105.9 686 81.3
BcaB03g14885 Brassica carinata HOM05D004330 ORTHO05D005182 0.0e+00 1105.1 686 81.3
Nn6g32085 Nelumbo nucifera HOM05D004330 ORTHO05D005182 0.0e+00 1105.1 686 81.6
CANSAT01G1169 Cannabis sativa HOM05D004330 ORTHO05D005182 0.0e+00 1104.7 686 81.6
Peaxi162Scf00078g01141 Petunia axillaris HOM05D004330 ORTHO05D005182 0.0e+00 1104.0 706 79.9
A07p37610 Brassica napus HOM05D004330 ORTHO05D005182 0.0e+00 1102.0 686 81.0
BolC6t39595H Brassica oleracea HOM05D004330 ORTHO05D005182 0.0e+00 1101.7 686 81.0
TPR.G10262 Trifolium pratense HOM05D004330 ORTHO05D005182 0.0e+00 1101.3 686 81.8
BraA07t31323Z Brassica rapa HOM05D004330 ORTHO05D005182 0.0e+00 1099.7 687 81.2
AT1G71270 Arabidopsis thaliana HOM05D004330 ORTHO05D005182 0.0e+00 1099.3 686 80.9
Aqoxy5G00868 Aquilegia oxysepala HOM05D004330 ORTHO05D005182 0.0e+00 1098.6 686 80.9
AL2G30885 Arabidopsis lyrata HOM05D004330 ORTHO05D005182 0.0e+00 1098.6 686 80.9
TAR628G0944 Trochodendron aralioides HOM05D004330 ORTHO05D005182 0.0e+00 1098.6 677 83.2
Ca_09987_v3 Cicer arietinum L. HOM05D004330 ORTHO05D005182 0.0e+00 1097.4 686 81.3
PSO210G1668 Papaver somniferum HOM05D004330 ORTHO05D005182 0.0e+00 1097.4 686 82.1
Psat6g142240 Pisum sativum HOM05D004330 ORTHO05D005182 0.0e+00 1097.0 686 81.3
Carub.0002s1815 Capsella rubella HOM05D004330 ORTHO05D005182 0.0e+00 1096.6 686 80.8
PSO761G0081 Papaver somniferum HOM05D004330 ORTHO05D005182 0.0e+00 1096.6 686 82.1
FAN19G3045 Fragaria x ananassa HOM05D004330 ORTHO05D005182 0.0e+00 1096.3 690 82.0
THA.LOC104803377 Tarenaya hassleriana HOM05D004330 ORTHO05D005182 0.0e+00 1094.7 687 80.9
TWI12G0377 Tripterygium wilfordii HOM05D004330 ORTHO05D005182 0.0e+00 1094.0 713 79.2
Migut.G00904 Erythranthe guttata HOM05D004330 ORTHO05D005182 0.0e+00 1091.6 688 81.0
ATR0580G447 Amborella trichopoda HOM05D004330 ORTHO05D005182 0.0e+00 1087.8 686 80.5
CSS0008451 Camellia sinensis var. sinensis HOM05D004330 ORTHO05D005182 0.0e+00 1087.0 692 81.9
Duzib177G1138 Durio zibethinus HOM05D004330 ORTHO05D005182 0.0e+00 1083.9 686 81.9
AUR62011839 Chenopodium quinoa HOM05D004330 ORTHO05D005182 0.0e+00 1083.2 593 95.4
Thhalv10018205m.g Eutrema salsugineum HOM05D004330 ORTHO05D005182 0.0e+00 1075.1 686 79.3
MSTRG.22475 Avicennia marina HOM05D004330 ORTHO05D005182 4.7e-312 1074.3 670 82.1
ECA246G0284 Erigeron canadensis HOM05D004330 ORTHO05D005182 4.7e-312 1074.3 685 79.1
CsaV3_2G033380 Cucumis sativus L. HOM05D004330 ORTHO05D005182 1.4e-311 1072.4 686 80.3
Lj7C415G17 Lonicera japonica HOM05D004330 ORTHO05D005182 1.4e-311 1072.4 688 79.7
SalBow6G7193 Salvia bowleyana HOM05D004330 ORTHO05D005182 2.4e-311 1071.6 733 76.7
Oeu020638.1 Olea europaea HOM05D004330 ORTHO05D005182 1.6e-310 1068.9 762 74.4
Sed0024292 Sechium edule HOM05D004330 ORTHO05D005182 1.4e-309 1065.8 686 80.2
MELO3C008109.2 Cucumis melo HOM05D004330 ORTHO05D005182 1.8e-309 1065.4 704 78.6
ClCG11G008260 Citrullus lanatus HOM05D004330 ORTHO05D005182 1.4e-306 1055.8 688 79.7
Os03g0417900 Oryza sativa ssp. japonica HOM05D004330 ORTHO05D005182 1.8e-306 1055.4 687 77.7
Nitab4.5_0007150g0080 Nicotiana tabacum HOM05D004330 ORTHO05D005182 5.3e-306 1053.9 698 77.8
THA.LOC104823378 Tarenaya hassleriana HOM05D004330 ORTHO05D005182 1.2e-305 1052.7 688 78.3
Aa31LG4G9240 Aethionema arabicum HOM05D004330 ORTHO05D005182 1.7e-304 1048.9 728 75.0
Lsat_1_v5_gn_6_109860 Lactuca sativa HOM05D004330 ORTHO05D005182 6.1e-302 1040.4 659 79.2
SalBow6G1408 Salvia bowleyana HOM05D004330 ORTHO05D005182 3.4e-300 1034.6 733 75.2
Aqoxy2G00735 Aquilegia oxysepala HOM05D004330 ORTHO05D005182 4.4e-300 1034.2 686 76.4
Nitab4.5_0002887g0010 Nicotiana tabacum HOM05D004330 ORTHO05D005182 5.7e-300 1033.9 668 79.6
Carub.0002s1817 Capsella rubella HOM05D004330 ORTHO05D005182 1.5e-295 1019.2 687 75.5
unitig_37.g12692 Utricularia gibba HOM05D004330 ORTHO05D005182 6.8e-293 1010.4 710 73.5
AT1G71300 Arabidopsis thaliana HOM05D004330 ORTHO05D005182 2.6e-284 981.9 740 68.8
Hund19537 Selenicereus undatus HOM05D004330 ORTHO05D005182 2.0e-276 955.7 556 89.6
AagrBONN_evm.TU.Sc2ySwM_228.5612 Anthoceros agrestis HOM05D004330 ORTHO05D005182 1.9e-274 949.1 692 68.8
AagrBONN_evm.TU.Sc2ySwM_228.5613 Anthoceros agrestis HOM05D004330 ORTHO05D005182 1.9e-274 949.1 692 68.8
AL2G30900 Arabidopsis lyrata HOM05D004330 ORTHO05D005182 6.6e-272 940.6 610 78.7
COL.COLO4_37491 Corchorus olitorius HOM05D004330 ORTHO05D005182 5.6e-271 937.6 633 77.7
Mapoly0091s0001 Marchantia polymorpha HOM05D004330 ORTHO05D005182 1.3e-267 926.4 683 67.3
Pp3c4_27380 Physcomitrium patens HOM05D004330 ORTHO05D005182 1.5e-263 912.9 688 67.4
SMO304G0018 Selaginella moellendorffii HOM05D004330 ORTHO05D005182 1.8e-261 906.0 693 65.9
HPP92_006305 Vanilla planifolia HOM05D004330 ORTHO05D005182 3.1e-261 905.2 586 78.3
Zm00001eb393130 Zea mays HOM05D004330 ORTHO05D005182 4.0e-253 878.2 567 76.9
Haze_02242 Corylus avellana HOM05D004330 ORTHO05D005182 1.2e-249 866.7 685 68.6
vmacro23409 Vaccinium macrocarpon HOM05D004330 ORTHO05D005182 2.7e-249 865.5 591 76.0
Atru.chr13.2589 Acer truncatum HOM05D004330 ORTHO05D005182 1.8e-245 852.8 494 87.7
SHI24508 Sapria himalayana HOM05D004330 ORTHO05D005182 7.9e-241 837.4 677 67.8
MBI16_g23303_MAGBIO Magnolia biondii HOM05D004330 ORTHO05D005182 4.8e-230 801.6 477 86.2
Os10g0488300 Oryza sativa ssp. japonica HOM05D004330 ORTHO05D005182 2.8e-222 775.8 683 58.0
Zm00001eb045280 Zea mays HOM05D004330 ORTHO05D005182 2.0e-207 726.5 677 55.2
CDE03G0141 Ceratophyllum demersum HOM05D004330 ORTHO05D005182 1.2e-191 674.1 425 78.1
COL.COLO4_33595 Corchorus olitorius HOM05D004330 ORTHO05D005182 9.7e-191 671.0 447 80.1
MCO11G104 Micromonas commoda HOM05D004330 ORTHO05D005182 2.1e-153 547.0 741 43.5
SEGI_21093 Sequoiadendron giganteum HOM05D004330 ORTHO05D005182 4.9e-150 535.8 329 78.7
Cre08.g367200 Chlamydomonas reinhardtii HOM05D004330 ORTHO05D005182 1.4e-141 507.7 778 37.1
Migut.C00321 Erythranthe guttata HOM05D004330 ORTHO05D005182 2.2e-126 457.2 281 81.5
CBR_g54934 Chara braunii HOM05D004330 ORTHO05D005182 1.8e-120 437.6 359 63.0
CSS0031487 Camellia sinensis var. sinensis HOM05D004330 ORTHO05D005182 3.2e-117 426.8 271 78.2
Haze_02247 Corylus avellana HOM05D004330 ORTHO05D005182 5.5e-117 426.0 270 79.6
PRCOL_00005416 Prasinoderma coloniale HOM05D004330 ORTHO05D005182 1.1e-112 411.8 748 35.6
MBI16_g41537_MAGBIO Magnolia biondii HOM05D004330 ORTHO05D005182 6.7e-107 392.5 233 82.4
HPP92_006235 Vanilla planifolia HOM05D004330 ORTHO05D005182 1.5e-103 381.3 261 78.5
COL.COLO4_00397 Corchorus olitorius HOM05D004330 ORTHO05D005182 2.6e-103 380.6 238 79.8
SGA_v2.0_scaffold227G43197 Striga asiatica HOM05D004330 ORTHO05D005182 1.2e-100 371.7 254 73.2
CDE03G0281 Ceratophyllum demersum HOM05D004330 ORTHO05D005182 8.2e-97 359.0 236 80.9
FvH4_6g22200 Fragaria vesca HOM05D004330 ORTHO05D005182 3.0e-75 287.3 193 81.3
HPP92_006237 Vanilla planifolia HOM05D004330 ORTHO05D005182 3.3e-74 283.9 192 71.4
SalBow1G7663 Salvia bowleyana HOM05D001091 ORTHO05D001020 2.8e-73 280.8 215 68.4
MBI13_g40628_MAGBIO Magnolia biondii HOM05D004330 ORTHO05D005182 6.5e-70 269.6 148 85.8
Rhsim02G0174800 Rhododendron simsii HOM05D004330 ORTHO05D005182 1.2e-63 248.8 195 66.2
FAN14G0768 Fragaria x ananassa HOM05D004330 ORTHO05D005182 1.0e-59 235.7 192 70.3
CBR_g54936 Chara braunii HOM05D000019 ORTHO05D000353 5.2e-59 233.4 155 67.1
Oeu028617.1 Olea europaea HOM05D004330 ORTHO05D005182 1.6e-52 211.8 170 64.1
Actinidia09912 Actinidia chinensis HOM05D004330 ORTHO05D005182 6.1e-52 209.9 165 67.9
QL04p036179 Quercus lobata HOM05D004330 ORTHO05D037441 2.6e-50 204.5 180 65.6
Hund19535 Selenicereus undatus HOM05D004330 ORTHO05D005182 2.6e-50 204.5 114 94.7
QL09p008022 Quercus lobata HOM05D004330 ORTHO05D005182 3.4e-50 204.1 223 54.3
Cfa027264 Carpinus fangiana HOM05D004330 ORTHO05D005182 5.4e-48 196.8 489 27.8
Nitab4.5_0006062g0030 Nicotiana tabacum HOM05D004330 ORTHO05D005182 1.9e-45 188.3 122 79.5
Rhsim02G0174700 Rhododendron simsii HOM05D004330 ORTHO05D005182 5.2e-43 180.3 111 87.4
HanXRQChr10g0312231 Helianthus annuus HOM05D004330 ORTHO05D005182 2.7e-39 167.9 105 80.0
SEGI_19884 Sequoiadendron giganteum HOM05D004330 ORTHO05D005182 2.3e-38 164.9 111 74.8
C06p46260 Brassica napus HOM05D004330 ORTHO05D005182 4.7e-28 130.6 100 67.0
CARHR152420 Cardamine hirsuta HOM05D004330 ORTHO05D005182 1.5e-26 125.6 139 53.2
C06p46170 Brassica napus HOM05D004330 ORTHO05D005182 5.8e-26 123.6 100 64.0
C06p46210 Brassica napus HOM05D004330 ORTHO05D005182 5.8e-26 123.6 100 64.0
EL10Ac2g03375 Beta vulgaris HOM05D015602 ORTHO05D006373 3.5e-23 114.4 65 89.2
EL10Ac2g03252 Beta vulgaris HOM05D004330 ORTHO05D005182 4.6e-23 114.0 69 79.7
Zm00001eb371470 Zea mays HOM05D003702 ORTHO05D004653 8.7e-22 109.8 63 81.0
MBI13_g40627_MAGBIO Magnolia biondii HOM05D004330 ORTHO05D005182 3.3e-21 107.8 81 69.1
HPP92_006236 Vanilla planifolia HOM05D004330 ORTHO05D005182 4.3e-21 107.5 57 89.5
Zm00001eb294100 Zea mays HOM05D003702 ORTHO05D004653 3.6e-20 104.4 77 67.5
Haze_14000 Corylus avellana HOM05D004330 ORTHO05D005182 1.1e-19 102.8 68 76.5
Zm00001eb378040 Zea mays HOM05D004330 ORTHO05D000629 1.8e-19 102.1 59 81.4
CARHR064590 Cardamine hirsuta HOM05D004330 ORTHO05D005182 4.0e-19 100.9 103 57.3
COL.COLO4_23503 Corchorus olitorius HOM05D004330 ORTHO05D005182 9.0e-19 99.8 68 75.0
HPP92_006372 Vanilla planifolia HOM05D004330 ORTHO05D005182 1.3e-14 85.9 93 51.6
SGA_v2.0_scaffold123G33447 Striga asiatica HOM05D004330 ORTHO05D005182 1.4e-11 75.9 78 51.3
GSVIVG01018671001 Vitis vinifera HOM05D004330 ORTHO05D005182 3.4e-10 71.2 72 55.6
QL05p049490 Quercus lobata HOM05D000205 ORTHO05D037441 4.2e-08 64.3 40 77.5
COL.COLO4_37492 Corchorus olitorius HOM05D004330 ORTHO05D005182 1.3e-06 59.3 37 75.7


User provided reference genes

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