Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac9g22126 Beta vulgaris HOM05D001988 ORTHO05D004985 0.0e+00 1469.5 733 100.0
EL10Ac6g13205 Beta vulgaris HOM05D001988 ORTHO05D004985 0.0e+00 1320.1 733 91.4
AUR62005788 Chenopodium quinoa HOM05D001988 ORTHO05D004985 2.6e-274 948.7 732 66.9
Ah.05g179340 Amaranthus hybridus HOM05D001988 ORTHO05D004985 5.6e-237 824.7 736 58.8
AUR62028773 Chenopodium quinoa HOM05D001988 ORTHO05D004985 3.2e-232 808.9 678 62.2
Hund05880 Selenicereus undatus HOM05D001988 ORTHO05D004985 1.3e-193 680.6 773 49.5
Cfa008981 Carpinus fangiana HOM05D001988 ORTHO05D004985 8.2e-172 608.2 764 46.1
QL03p064038 Quercus lobata HOM05D001988 ORTHO05D004985 7.7e-162 575.1 798 44.2
QL03p063402 Quercus lobata HOM05D001988 ORTHO05D004985 2.2e-161 573.5 798 44.1
Manes.01G185700 Manihot esculenta HOM05D001988 ORTHO05D004985 7.2e-160 568.5 799 43.7
Eucgr.B03445 Eucalyptus grandis HOM05D001988 ORTHO05D004985 1.2e-159 567.8 790 43.2
AUR62008859 Chenopodium quinoa HOM05D001988 ORTHO05D004985 1.4e-158 564.3 400 70.2
Lj8A318G47 Lonicera japonica HOM05D001988 ORTHO05D004985 1.6e-154 550.8 752 43.9
CANSAT54G1389 Cannabis sativa HOM05D001988 ORTHO05D004985 4.5e-154 549.3 804 41.9
FAN21G2649 Fragaria x ananassa HOM05D001988 ORTHO05D004985 7.7e-154 548.5 753 44.8
Actinidia19875 Actinidia chinensis HOM05D001988 ORTHO05D004985 2.9e-153 546.6 790 42.9
FvH4_3g26291 Fragaria vesca HOM05D001988 ORTHO05D004985 5.0e-153 545.8 791 44.0
GSVIVG01019982001 Vitis vinifera HOM05D001988 ORTHO05D004985 5.0e-153 545.8 713 45.4
Glyma.11G111300 Glycine max HOM05D001988 ORTHO05D004985 6.5e-153 545.4 791 42.5
Ciclev10030768m.g Citrus clementina HOM05D001988 ORTHO05D004985 1.5e-152 544.3 775 43.7
FAN11G2867 Fragaria x ananassa HOM05D001988 ORTHO05D006298 1.5e-152 544.3 791 44.0
PGR102G2417 Punica granatum HOM05D001988 ORTHO05D004985 2.5e-152 543.5 789 42.1
vmacro01260 Vaccinium macrocarpon HOM05D001988 ORTHO05D004985 3.2e-152 543.1 790 41.8
MD04G1025400 Malus domestica HOM05D001988 ORTHO05D004985 4.2e-152 542.7 745 42.4
ClCG11G010950 Citrullus lanatus HOM05D001988 ORTHO05D004985 5.5e-152 542.3 794 43.5
Haze_12013 Corylus avellana HOM05D001988 ORTHO05D004985 7.2e-152 542.0 918 39.1
FAN25G3604 Fragaria x ananassa HOM05D001988 ORTHO05D006298 9.5e-152 541.6 753 44.5
Gorai.009G324500 Gossypium raimondii HOM05D001988 ORTHO05D004985 1.6e-151 540.8 788 42.5
Gohir.D05G304800 Gossypium hirsutum HOM05D001988 ORTHO05D004985 2.1e-151 540.4 788 42.5
Prupe.1G174900 Prunus persica HOM05D001988 ORTHO05D004985 6.1e-151 538.9 772 43.5
Duzib251G0871 Durio zibethinus HOM05D001988 ORTHO05D004985 2.3e-150 537.0 791 41.6
Rhsim12G0063800 Rhododendron simsii HOM05D001988 ORTHO05D004985 1.2e-149 534.6 794 41.8
MELO3C008752.2 Cucumis melo HOM05D001988 ORTHO05D004985 2.0e-149 533.9 804 42.2
Phvul.011G039300 Phaseolus vulgaris HOM05D001988 ORTHO05D004985 3.7e-148 529.6 793 42.5
Sabra10G0129300 Salix brachista HOM05D001988 ORTHO05D004985 4.1e-147 526.2 796 41.2
VMungo1127G0715 Vigna mungo HOM05D001988 ORTHO05D004985 7.0e-147 525.4 790 42.2
Thecc.02G346500 Theobroma cacao HOM05D001988 ORTHO05D004985 1.2e-146 524.6 790 41.8
Cpa.g.sc128.24 Carica papaya HOM05D001988 ORTHO05D004985 2.0e-146 523.9 765 42.6
Nn4g23157 Nelumbo nucifera HOM05D001988 ORTHO05D004985 5.9e-146 522.3 762 42.1
CSS0030030 Camellia sinensis var. sinensis HOM05D001988 ORTHO05D004985 1.0e-145 521.5 786 43.0
Lj3g0010541 Lotus japonicus HOM05D001988 ORTHO05D004985 1.0e-145 521.5 775 41.8
Sed0003814 Sechium edule HOM05D001988 ORTHO05D004985 1.1e-144 518.1 799 40.7
Lalb_Chr14g0368981 Lupinus albus HOM05D001988 ORTHO05D004985 3.3e-144 516.5 762 42.0
Sc11g0001930 Simmondsia chinensis HOM05D001988 ORTHO05D004985 9.5e-144 515.0 782 41.3
CiPaw.05G135300 Carya illinoinensis HOM05D001988 ORTHO05D004985 1.2e-143 514.6 654 47.7
arahy.Tifrunner.gnm1.ann1.8UN484 Arachis hypogaea HOM05D001988 ORTHO05D004985 4.0e-142 509.6 802 40.9
vmacro01166 Vaccinium macrocarpon HOM05D001988 ORTHO05D004985 1.2e-141 508.1 785 42.3
arahy.Tifrunner.gnm1.ann1.41IR6N Arachis hypogaea HOM05D001988 ORTHO05D004985 2.0e-141 507.3 802 40.8
Gohir.A05G183600 Gossypium hirsutum HOM05D001988 ORTHO05D004985 2.6e-141 506.9 789 40.7
Ca_20931_v3 Cicer arietinum L. HOM05D001988 ORTHO05D004985 2.2e-140 503.8 790 41.1
FAN25G3456 Fragaria x ananassa HOM05D001988 ORTHO05D004985 1.2e-138 498.0 718 43.9
CsaV3_2G009530 Cucumis sativus L. HOM05D001988 ORTHO05D004985 2.0e-138 497.3 688 44.5
THA.LOC104805159 Tarenaya hassleriana HOM05D001988 ORTHO05D004985 3.5e-138 496.5 735 41.1
HanXRQChr05g0145521 Helianthus annuus HOM05D001988 ORTHO05D004985 4.6e-138 496.1 759 40.8
arahy.Tifrunner.gnm1.ann1.AY0VQT Arachis hypogaea HOM05D001988 ORTHO05D004985 5.9e-138 495.7 802 40.1
MSTRG.27418 Avicennia marina HOM05D001988 ORTHO05D004985 2.3e-137 493.8 756 39.6
Lsat_1_v5_gn_5_156781 Lactuca sativa HOM05D001988 ORTHO05D004985 2.3e-137 493.8 755 41.9
HanXRQChr09g0255131 Helianthus annuus HOM05D001988 ORTHO05D004985 1.9e-136 490.7 742 40.7
Peaxi162Scf00217g00713 Petunia axillaris HOM05D001988 ORTHO05D004985 1.1e-134 485.0 754 41.6
Medtr4g057650 Medicago truncatula HOM05D001988 ORTHO05D004985 2.3e-134 483.8 782 38.7
Psat7g139200 Pisum sativum HOM05D001988 ORTHO05D004985 3.1e-134 483.4 759 40.2
Nitab4.5_0000428g0180 Nicotiana tabacum HOM05D001988 ORTHO05D004985 1.5e-133 481.1 755 42.0
Nitab4.5_0007649g0010 Nicotiana tabacum HOM05D001988 ORTHO05D004985 3.4e-133 479.9 752 41.9
Lsat_1_v5_gn_8_100701 Lactuca sativa HOM05D001988 ORTHO05D004985 2.9e-132 476.9 735 41.1
TWI53G0339 Tripterygium wilfordii HOM05D001988 ORTHO05D004985 3.7e-132 476.5 743 40.4
SHI13475 Sapria himalayana HOM05D001988 ORTHO05D004985 1.9e-131 474.2 733 40.2
SalBow1G3615 Salvia bowleyana HOM05D001988 ORTHO05D004985 2.4e-131 473.8 723 40.9
Migut.F02100 Erythranthe guttata HOM05D001988 ORTHO05D004985 3.5e-130 469.9 730 39.2
Cc09_g03970 Coffea canephora HOM05D001988 ORTHO05D004985 6.0e-130 469.2 755 38.8
PGSC0003DMG401018705 Solanum tuberosum HOM05D001988 ORTHO05D004985 6.6e-129 465.7 738 41.3
ECA248G0899 Erigeron canadensis HOM05D001988 ORTHO05D004985 5.6e-128 462.6 762 39.6
TPR.G27077 Trifolium pratense HOM05D001988 ORTHO05D004985 9.5e-128 461.8 763 38.0
CAN.G439.30 Capsicum annuum HOM05D001988 ORTHO05D004985 2.8e-127 460.3 723 41.2
Sopen11g029230 Solanum pennellii HOM05D001988 ORTHO05D004985 1.8e-126 457.6 738 40.7
Solyc11g071540.2 Solanum lycopersicum HOM05D001988 ORTHO05D004985 1.2e-125 454.9 738 40.0
Sopen09g001990 Solanum pennellii HOM05D001988 ORTHO05D004985 1.7e-124 451.1 722 41.0
SGA_v2.0_scaffold58G20462 Striga asiatica HOM05D001988 ORTHO05D004985 2.2e-124 450.7 738 39.2
Solyc09g007120.4 Solanum lycopersicum HOM05D001988 ORTHO05D004985 2.4e-123 447.2 722 40.7
Migut.I00421 Erythranthe guttata HOM05D001988 ORTHO05D004985 9.2e-123 445.3 741 37.8
Medtr4g071660 Medicago truncatula HOM05D001988 ORTHO05D004985 1.6e-122 444.5 765 37.5
Aa31LG2G7390 Aethionema arabicum HOM05D001988 ORTHO05D004985 3.5e-122 443.4 756 39.4
TAR629G1399 Trochodendron aralioides HOM05D001988 ORTHO05D004985 6.0e-122 442.6 549 48.3
Carub.0005s0183 Capsella rubella HOM05D001988 ORTHO05D004985 7.8e-122 442.2 781 39.9
Aqoxy1G01101 Aquilegia oxysepala HOM05D001988 ORTHO05D004985 1.3e-121 441.4 732 38.4
Lsat_1_v5_gn_4_55321 Lactuca sativa HOM05D001988 ORTHO05D004985 1.3e-121 441.4 755 38.7
TPR.G16225 Trifolium pratense HOM05D001988 ORTHO05D004985 1.3e-121 441.4 725 40.4
RcHm_v2.0_Chr7g0220021 Rosa chinensis HOM05D001988 ORTHO05D004985 1.1e-120 438.3 594 44.4
RcHm_v2.0_Chr5g0048641 Rosa chinensis HOM05D001988 ORTHO05D004985 3.6e-119 433.3 592 44.6
ECA234G0637 Erigeron canadensis HOM05D001988 ORTHO05D004985 7.6e-117 425.6 730 37.7
AL5G12570 Arabidopsis lyrata HOM05D001988 ORTHO05D004985 2.9e-116 423.7 747 40.2
Dinv16646 Davidia involucrata HOM05D001988 ORTHO05D004985 1.4e-115 421.4 425 52.7
Thhalv10027666m.g Eutrema salsugineum HOM05D001988 ORTHO05D004985 1.3e-113 414.8 732 38.7
AT2G02955 Arabidopsis thaliana HOM05D001988 ORTHO05D004985 5.1e-113 412.9 737 38.4
Sp7g05500 Schrenkiella parvula HOM05D001988 ORTHO05D004985 1.4e-110 404.8 755 36.8
CDE07G0941 Ceratophyllum demersum HOM05D001988 ORTHO05D004985 5.2e-110 402.9 653 38.3
unitig_60.g25620 Utricularia gibba HOM05D001988 ORTHO05D004985 1.2e-109 401.7 707 35.8
BolC8t52776H Brassica oleracea HOM05D001988 ORTHO05D004985 9.9e-109 398.7 750 36.9
A09p68050 Brassica napus HOM05D001988 ORTHO05D004985 1.7e-108 397.9 752 37.5
Hma1.2p1_0265F.1_g106750 Hydrangea macrophylla HOM05D001988 ORTHO05D004985 2.2e-108 397.5 410 52.0
DCAR_007151 Daucus carota HOM05D001988 ORTHO05D004985 6.4e-108 396.0 760 36.8
BraA09t42140Z Brassica rapa HOM05D001988 ORTHO05D004985 2.4e-107 394.0 753 37.1
C08p52490 Brassica napus HOM05D001988 ORTHO05D004985 9.3e-107 392.1 750 36.4
BcaC07g42212 Brassica carinata HOM05D001988 ORTHO05D004985 4.6e-106 389.8 755 36.6
PSO017G3571 Papaver somniferum HOM05D001988 ORTHO05D004985 1.3e-103 381.7 731 34.1
Eucgr.B03444 Eucalyptus grandis HOM05D001988 ORTHO05D004985 3.6e-103 380.2 513 44.4
Medtr5g067430 Medicago truncatula HOM05D001988 ORTHO05D004985 3.1e-102 377.1 752 35.1
PSO063G4641 Papaver somniferum HOM05D001988 ORTHO05D004985 1.5e-101 374.8 708 34.2
AL6G52060 Arabidopsis lyrata HOM05D001988 ORTHO05D004985 2.2e-100 370.9 705 36.7
HPP92_021577 Vanilla planifolia HOM05D001988 ORTHO05D004985 6.4e-100 369.4 764 33.9
Oeu037938.2 Olea europaea HOM05D001988 ORTHO05D004985 9.3e-99 365.5 536 42.4
Carub.0006s3640 Capsella rubella HOM05D001988 ORTHO05D004985 6.9e-94 349.4 733 34.7
MBI19_g09828_MAGBIO Magnolia biondii HOM05D001988 ORTHO05D004985 7.6e-93 345.9 604 38.9
SEGI_17598 Sequoiadendron giganteum HOM05D001988 ORTHO05D004985 1.3e-92 345.1 755 32.8
SEGI_28471 Sequoiadendron giganteum HOM05D001988 ORTHO05D004985 4.3e-88 330.1 736 33.2
Potri.010G169500 Populus trichocarpa HOM05D001988 ORTHO05D004985 6.2e-87 326.2 479 43.4
CARHR145370 Cardamine hirsuta HOM05D001988 ORTHO05D004985 3.8e-84 317.0 536 40.5
Zm00001eb284870 Zea mays HOM05D001988 ORTHO05D004985 6.5e-84 316.2 727 32.3
Hund25598 Selenicereus undatus HOM05D001988 ORTHO05D004985 2.4e-78 297.7 677 34.1
Thhalv10004418m.g Eutrema salsugineum HOM05D001988 ORTHO05D004985 4.8e-71 273.5 436 39.7
Oeu007681.1 Olea europaea HOM05D001988 ORTHO05D004985 1.1e-67 262.3 343 43.4
Pp3c9_8400 Physcomitrium patens HOM05D001988 ORTHO05D004985 6.7e-65 253.1 764 29.1
Atru.chr11.1785 Acer truncatum HOM05D001988 ORTHO05D004985 3.3e-64 250.8 396 43.9
arahy.Tifrunner.gnm1.ann1.N3HM5N Arachis hypogaea HOM05D001988 ORTHO05D004985 3.3e-64 250.8 436 36.5
COL.COLO4_23013 Corchorus olitorius HOM05D001988 ORTHO05D004985 1.6e-58 231.9 782 27.7
Mapoly0075s0087 Marchantia polymorpha HOM05D001988 ORTHO05D004985 1.3e-55 222.2 831 26.6
AagrBONN_evm.TU.Sc2ySwM_362.1334 Anthoceros agrestis HOM05D001988 ORTHO05D004985 1.0e-52 212.6 679 26.7
Hund25529 Selenicereus undatus HOM05D001988 ORTHO05D004985 8.5e-52 209.5 235 46.0
ATR0782G208 Amborella trichopoda HOM05D001988 ORTHO05D004985 5.5e-51 206.8 433 33.5
PGSC0003DMG400002020 Solanum tuberosum HOM05D001988 ORTHO05D004985 9.4e-51 206.1 171 60.8
Aqoxy5G02833 Aquilegia oxysepala HOM05D001988 ORTHO05D004985 6.3e-39 166.8 241 42.7
Atru.chr11.1786 Acer truncatum HOM05D001988 ORTHO05D004985 2.8e-34 151.4 150 50.7
AagrBONN_evm.TU.Sc2ySwM_362.1335 Anthoceros agrestis HOM05D000001 ORTHO05D000003 3.6e-34 151.0 632 25.0
Aqoxy5G02832 Aquilegia oxysepala HOM05D001988 ORTHO05D004985 2.3e-33 148.3 241 38.2
Medtr4g071850 Medicago truncatula HOM05D001988 ORTHO05D004985 3.1e-30 137.9 196 37.8
RcHm_v2.0_Chr7g0220011 Rosa chinensis HOM05D001988 ORTHO05D004985 2.9e-28 131.3 123 57.7
RcHm_v2.0_Chr5g0048631 Rosa chinensis HOM05D001988 ORTHO05D004985 5.0e-28 130.6 122 57.4
SMO239G0039 Selaginella moellendorffii HOM05D001988 ORTHO05D004985 1.1e-27 129.4 141 48.2
Actinidia31897 Actinidia chinensis HOM05D001988 ORTHO05D004985 1.9e-27 128.6 210 38.1
Peaxi162Scf00342g00711 Petunia axillaris HOM05D001988 ORTHO05D004985 2.5e-27 128.3 149 47.0
PSO513G0179 Papaver somniferum HOM05D001988 ORTHO05D004985 4.0e-25 120.9 553 23.0
Aqoxy5G02834 Aquilegia oxysepala HOM05D001988 ORTHO05D004985 2.9e-23 114.8 120 50.8
EL10As5g23508 Beta vulgaris HOM05D001988 ORTHO05D004985 5.4e-22 110.5 81 72.8
AagrBONN_evm.TU.Sc2ySwM_117.2968 Anthoceros agrestis HOM05D001988 ORTHO05D004985 4.3e-19 100.9 198 32.8
CDE06G2098 Ceratophyllum demersum HOM05D001988 ORTHO05D004985 1.4e-17 95.9 301 26.6
CARHR145380 Cardamine hirsuta HOM05D001988 ORTHO05D004985 2.3e-17 95.1 197 32.0
AagrBONN_evm.TU.Sc2ySwM_369.75 Anthoceros agrestis HOM05D001988 ORTHO05D004985 9.8e-16 89.7 155 34.2
CARHR212720 Cardamine hirsuta HOM05D001988 ORTHO05D004985 6.4e-15 87.0 371 25.3
AT1G42615 Arabidopsis thaliana HOM05D001988 ORTHO05D004985 7.8e-13 80.1 142 38.7
MCO03G550 Micromonas commoda HOM05D001988 ORTHO05D004985 5.1e-12 77.4 488 21.9
CARHR289080 Cardamine hirsuta HOM05D001988 ORTHO05D004985 1.9e-11 75.5 65 56.9
Os05g0352700 Oryza sativa ssp. japonica HOM05D001988 ORTHO05D004985 2.8e-10 71.6 168 31.5
AL7G47160 Arabidopsis lyrata HOM05D001988 ORTHO05D004985 2.3e-09 68.6 54 64.8
Peaxi162Scf00342g00712 Petunia axillaris HOM05D001988 ORTHO05D004985 3.1e-09 68.2 136 36.8
BcaC06g34029 Brassica carinata HOM05D001988 ORTHO05D004985 2.6e-08 65.1 75 50.7
Atru.chr11.1787 Acer truncatum HOM05D001988 ORTHO05D004985 4.4e-08 64.3 67 49.3
CBR_g30180 Chara braunii HOM05D001988 ORTHO05D004985 2.9e-07 61.6 64 42.2
QL03p064050 Quercus lobata HOM05D001988 ORTHO05D004985 3.2e-06 58.2 61 49.2
QL03p063393 Quercus lobata HOM05D001988 ORTHO05D004985 5.4e-06 57.4 62 46.8


User provided reference genes

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