Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac6g14054 Beta vulgaris HOM05D006560 ORTHO05D008164 2.2e-299 1031.6 532 100.0
Ah.14g086100 Amaranthus hybridus HOM05D006560 ORTHO05D008164 8.6e-179 630.9 532 64.5
AUR62014236 Chenopodium quinoa HOM05D006560 ORTHO05D008164 8.6e-179 630.9 532 63.3
AUR62038458 Chenopodium quinoa HOM05D006560 ORTHO05D008164 1.0e-163 580.9 530 60.0
Hund12951 Selenicereus undatus HOM05D006560 ORTHO05D008164 3.0e-163 579.3 525 61.9
Sc09g0004640 Simmondsia chinensis HOM05D006560 ORTHO05D008164 2.1e-137 493.4 503 57.1
GSVIVG01033201001 Vitis vinifera HOM05D006560 ORTHO05D008164 7.4e-122 441.8 567 48.1
TAR629G1839 Trochodendron aralioides HOM05D006560 ORTHO05D008164 2.8e-121 439.9 533 48.6
Atru.chr1.2184 Acer truncatum HOM05D006560 ORTHO05D008164 4.2e-117 426.0 534 48.7
Actinidia22879 Actinidia chinensis HOM05D006560 ORTHO05D008164 2.7e-116 423.3 545 46.6
Cfa008016 Carpinus fangiana HOM05D006560 ORTHO05D008164 2.7e-116 423.3 536 48.7
Lalb_Chr17g0345771 Lupinus albus HOM05D006560 ORTHO05D008164 5.1e-115 419.1 543 45.1
Manes.01G126500 Manihot esculenta HOM05D006560 ORTHO05D008164 1.5e-114 417.5 540 46.7
Nitab4.5_0000108g0060 Nicotiana tabacum HOM05D006560 ORTHO05D008164 2.5e-114 416.8 541 47.0
CAN.G809.82 Capsicum annuum HOM05D006560 ORTHO05D008164 3.3e-114 416.4 541 46.6
TWI77G0885 Tripterygium wilfordii HOM05D006560 ORTHO05D008164 1.3e-113 414.5 534 46.6
Migut.K01188 Erythranthe guttata HOM05D006560 ORTHO05D008164 1.7e-113 414.1 546 46.0
Medtr5g076180 Medicago truncatula HOM05D006560 ORTHO05D008164 1.7e-113 414.1 544 44.9
Aqoxy3G04298 Aquilegia oxysepala HOM05D006560 ORTHO05D008164 3.7e-113 412.9 534 47.6
CANSAT64G2566 Cannabis sativa HOM05D006560 ORTHO05D008164 1.1e-112 411.4 552 45.8
Potri.015G148300 Populus trichocarpa HOM05D006560 ORTHO05D008164 1.1e-112 411.4 535 47.9
CiPaw.04G006800 Carya illinoinensis HOM05D006560 ORTHO05D008164 1.8e-112 410.6 534 46.8
Psat2g048560 Pisum sativum HOM05D006560 ORTHO05D008164 3.1e-112 409.8 536 45.9
Haze_14043 Corylus avellana HOM05D006560 ORTHO05D008164 6.9e-112 408.7 533 48.6
arahy.Tifrunner.gnm1.ann1.N6ISZX Arachis hypogaea HOM05D006560 ORTHO05D008164 1.5e-111 407.5 538 45.7
Glyma.14G208100 Glycine max HOM05D006560 ORTHO05D008164 2.0e-111 407.1 544 45.6
VMungo0647G2139 Vigna mungo HOM05D006560 ORTHO05D008164 4.5e-111 406.0 533 45.0
Prupe.8G267600 Prunus persica HOM05D006560 ORTHO05D008164 5.9e-111 405.6 532 45.5
RcHm_v2.0_Chr7g0242051 Rosa chinensis HOM05D006560 ORTHO05D008164 1.3e-110 404.4 529 45.4
MSTRG.3663 Avicennia marina HOM05D006560 ORTHO05D008164 2.9e-110 403.3 556 44.6
Cc07_g12560 Coffea canephora HOM05D006560 ORTHO05D008164 1.9e-109 400.6 541 45.5
MD09G1187400 Malus domestica HOM05D006560 ORTHO05D008164 3.2e-109 399.8 532 45.5
SalBow5G2177 Salvia bowleyana HOM05D006560 ORTHO05D008164 3.2e-109 399.8 555 43.8
FvH4_5g39750 Fragaria vesca HOM05D006560 ORTHO05D008164 4.2e-109 399.4 531 45.0
TPR.G15397 Trifolium pratense HOM05D006560 ORTHO05D008164 4.2e-109 399.4 557 44.0
PSO063G7212 Papaver somniferum HOM05D006560 ORTHO05D008164 5.5e-109 399.1 538 45.4
Phvul.008G242800 Phaseolus vulgaris HOM05D006560 ORTHO05D008164 5.5e-109 399.1 527 45.0
arahy.Tifrunner.gnm1.ann1.RNL3QM Arachis hypogaea HOM05D006560 ORTHO05D008164 7.2e-109 398.7 536 45.1
Thecc.04G055900 Theobroma cacao HOM05D006560 ORTHO05D008164 3.0e-107 393.3 536 45.7
PSO782G5584 Papaver somniferum HOM05D006560 ORTHO05D008164 6.7e-107 392.1 538 44.8
Ca_05740_v3 Cicer arietinum L. HOM05D006560 ORTHO05D008164 2.0e-106 390.6 540 43.0
Eucgr.B03794 Eucalyptus grandis HOM05D006560 ORTHO05D008164 3.3e-106 389.8 549 43.7
Solyc02g081520.3 Solanum lycopersicum HOM05D006560 ORTHO05D008164 9.7e-106 388.3 525 44.4
QL02p055474 Quercus lobata HOM05D006560 ORTHO05D008164 2.2e-105 387.1 502 45.6
Sabra16G0321300 Salix brachista HOM05D006560 ORTHO05D008164 1.1e-104 384.8 538 45.5
DCAR_014134 Daucus carota HOM05D006560 ORTHO05D008164 1.4e-104 384.4 558 43.5
Duzib138G1900 Durio zibethinus HOM05D006560 ORTHO05D008164 9.1e-104 381.7 536 44.4
LjContig00141g0007295 Lotus japonicus HOM05D006560 ORTHO05D008164 1.3e-102 377.9 541 43.3
ClCG05G011330 Citrullus lanatus HOM05D006560 ORTHO05D008164 8.5e-102 375.2 538 44.2
QL02p056517 Quercus lobata HOM05D006560 ORTHO05D008164 8.5e-102 375.2 682 37.7
CsaV3_3G021130 Cucumis sativus L. HOM05D006560 ORTHO05D008164 1.1e-101 374.8 538 45.2
PGR102G0946 Punica granatum HOM05D006560 ORTHO05D008164 2.5e-101 373.6 531 43.1
Lj4A249G52 Lonicera japonica HOM05D006560 ORTHO05D008164 3.2e-101 373.2 489 45.4
MELO3C020249.2 Cucumis melo HOM05D006560 ORTHO05D008164 7.2e-101 372.1 538 44.6
SGA_v2.0_scaffold45G17096 Striga asiatica HOM05D006560 ORTHO05D008164 2.3e-99 367.1 553 41.4
Hma1.2p1_0085F.1_g043920 Hydrangea macrophylla HOM05D006560 ORTHO05D008164 6.7e-99 365.5 523 44.6
HanXRQChr16g0532681 Helianthus annuus HOM05D006560 ORTHO05D008164 1.1e-98 364.8 529 43.5
COL.COLO4_13435 Corchorus olitorius HOM05D006560 ORTHO05D008164 2.6e-98 363.6 552 43.1
Sp3g01710 Schrenkiella parvula HOM05D006560 ORTHO05D008164 2.2e-97 360.5 534 41.0
PGSC0003DMG400017739 Solanum tuberosum HOM05D006560 ORTHO05D008164 1.8e-96 357.5 552 41.7
Dinv28275 Davidia involucrata HOM05D006560 ORTHO05D008164 5.3e-96 355.9 511 44.8
Gohir.A12G053000 Gossypium hirsutum HOM05D006560 ORTHO05D008164 3.5e-95 353.2 529 42.5
AL3G12070 Arabidopsis lyrata HOM05D006560 ORTHO05D008164 4.5e-95 352.8 534 40.3
A05p44410 Brassica napus HOM05D006560 ORTHO05D008164 7.7e-95 352.1 535 39.8
Sed0010007 Sechium edule HOM05D006560 ORTHO05D008164 7.7e-95 352.1 537 42.3
Gorai.008G054800 Gossypium raimondii HOM05D006560 ORTHO05D008164 3.8e-94 349.7 527 41.7
Gohir.D12G051500 Gossypium hirsutum HOM05D006560 ORTHO05D008164 5.0e-94 349.4 528 41.9
Lsat_1_v5_gn_3_69681 Lactuca sativa HOM05D006560 ORTHO05D008164 8.5e-94 348.6 517 42.7
Nitab4.5_0003580g0010 Nicotiana tabacum HOM05D006560 ORTHO05D008164 1.9e-93 347.4 469 44.8
Sabra15G0156900 Salix brachista HOM05D006560 ORTHO05D008164 7.2e-93 345.5 561 41.2
Sabra16G0322200 Salix brachista HOM05D006560 ORTHO05D008164 8.0e-92 342.0 551 41.6
MBI03_g13822_MAGBIO Magnolia biondii HOM05D006560 ORTHO05D008164 1.0e-91 341.7 509 43.8
Rhsim10G0187300 Rhododendron simsii HOM05D006560 ORTHO05D008164 1.8e-91 340.9 639 36.6
ECA246G0244 Erigeron canadensis HOM05D006560 ORTHO05D008164 5.2e-91 339.3 533 38.8
CARHR076680 Cardamine hirsuta HOM05D006560 ORTHO05D008164 1.2e-90 338.2 534 39.7
Aa31LG5G13150 Aethionema arabicum HOM05D006560 ORTHO05D008164 2.0e-87 327.4 569 36.9
Thhalv10020468m.g Eutrema salsugineum HOM05D006560 ORTHO05D008164 1.5e-85 321.2 554 38.3
Os10g0487300 Oryza sativa ssp. japonica HOM05D006560 ORTHO05D008164 1.5e-85 321.2 534 37.6
BraA06t23296Z Brassica rapa HOM05D006560 ORTHO05D008164 5.5e-85 319.3 546 37.4
BcaC05g30516 Brassica carinata HOM05D006560 ORTHO05D008164 2.1e-84 317.4 552 37.7
BolC5t35073H Brassica oleracea HOM05D006560 ORTHO05D008164 3.6e-84 316.6 552 37.9
Carub.0003s0178 Capsella rubella HOM05D006560 ORTHO05D008164 3.6e-84 316.6 537 38.5
vmacro20436 Vaccinium macrocarpon HOM05D006560 ORTHO05D008164 8.0e-84 315.5 506 40.9
Glyma.02G239200 Glycine max HOM05D006560 ORTHO05D008164 3.0e-83 313.5 474 42.0
HPP92_015158 Vanilla planifolia HOM05D006560 ORTHO05D008164 4.4e-82 309.7 539 39.0
AT3G02680 Arabidopsis thaliana HOM05D006560 ORTHO05D008164 2.8e-81 307.0 554 37.7
C09p75830 Brassica napus HOM05D006560 ORTHO05D008164 5.0e-78 296.2 534 36.9
Migut.L00953 Erythranthe guttata HOM05D006560 ORTHO05D008164 2.8e-76 290.4 446 42.4
ATR0618G008 Amborella trichopoda HOM05D006560 ORTHO05D008164 2.6e-74 283.9 478 38.9
Migut.L00936 Erythranthe guttata HOM05D006560 ORTHO05D008164 4.1e-72 276.6 423 43.5
Zm00001eb221260 Zea mays HOM05D006560 ORTHO05D008164 2.3e-70 270.8 539 34.9
SEGI_37812 Sequoiadendron giganteum HOM05D006560 ORTHO05D008164 6.6e-70 269.2 563 32.5
Hma1.2p1_0085F.1_g043970 Hydrangea macrophylla HOM05D006560 ORTHO05D008164 6.8e-67 259.2 429 41.3
CDE04G3361 Ceratophyllum demersum HOM05D006560 ORTHO05D008164 7.5e-66 255.8 413 40.2
Peaxi162Scf00344g01815 Petunia axillaris HOM05D006560 ORTHO05D008164 9.8e-66 255.4 473 37.2
SHI09016 Sapria himalayana HOM05D006560 ORTHO05D008164 1.4e-64 251.5 428 38.1
Oeu060825.3 Olea europaea HOM05D006560 ORTHO05D008164 1.2e-63 248.4 500 37.4
Cpa.g.sc108.22 Carica papaya HOM05D006560 ORTHO05D008164 1.7e-62 244.6 423 40.0
BcaC05g30567 Brassica carinata HOM05D006560 ORTHO05D008164 3.6e-60 236.9 304 41.4
Sopen02g026150 Solanum pennellii HOM05D006560 ORTHO05D008164 5.1e-54 216.5 357 41.5
unitig_748.g7016 Utricularia gibba HOM05D006560 ORTHO05D008164 8.9e-43 179.1 526 29.5
Ciclev10012792m.g Citrus clementina HOM05D006560 ORTHO05D008164 8.4e-41 172.6 175 52.0
Nn3g18627 Nelumbo nucifera HOM05D006560 ORTHO05D008164 5.4e-40 169.9 163 51.5
Ciclev10013450m.g Citrus clementina HOM05D006560 ORTHO05D008164 6.6e-38 162.9 313 40.9
CSS0021055 Camellia sinensis var. sinensis HOM05D000185 ORTHO05D000105 1.9e-37 161.4 183 46.4
SMO169G0207 Selaginella moellendorffii HOM05D006560 ORTHO05D008164 1.9e-32 144.8 556 26.4
Hma1.2p1_0085F.1_g043960 Hydrangea macrophylla HOM05D006560 ORTHO05D008164 3.3e-29 134.0 118 56.8
Hma1.2p1_0085F.1_g043925 Hydrangea macrophylla HOM05D006560 ORTHO05D008164 2.1e-28 131.3 118 55.9
FAN08G2099 Fragaria x ananassa HOM05D006560 ORTHO05D008164 2.8e-28 131.0 119 53.8
CSS0034206 Camellia sinensis var. sinensis HOM05D006560 ORTHO05D008164 2.0e-26 124.8 238 42.4
Migut.L00946 Erythranthe guttata HOM05D006560 ORTHO05D008164 1.7e-25 121.7 150 47.3
Pp3c4_14090 Physcomitrium patens HOM05D006560 ORTHO05D008164 2.2e-25 121.3 611 23.9
TPR.G36125 Trifolium pratense HOM05D006560 ORTHO05D008164 8.4e-25 119.4 120 50.0
Migut.L00937 Erythranthe guttata HOM05D006560 ORTHO05D008164 3.3e-21 107.5 89 55.1
Nn3g18626 Nelumbo nucifera HOM05D006560 ORTHO05D008164 6.9e-19 99.8 87 63.2
FAN18G2665 Fragaria x ananassa HOM05D006560 ORTHO05D008164 1.5e-13 82.0 66 66.7
CBR_g29321 Chara braunii HOM05D006560 ORTHO05D008164 8.2e-12 76.3 176 29.5
Migut.L00945 Erythranthe guttata HOM05D006560 ORTHO05D008164 1.8e-11 75.1 62 54.8
Ciclev10013286m.g Citrus clementina HOM05D006560 ORTHO05D008164 1.4e-08 65.5 59 49.2


User provided reference genes

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