Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac5g12363 Beta vulgaris HOM05D004152 ORTHO05D004878 5.5e-119 431.0 224 100.0
Ah.12g054170 Amaranthus hybridus HOM05D004152 ORTHO05D004878 7.6e-60 234.6 226 56.6
AUR62019969 Chenopodium quinoa HOM05D004152 ORTHO05D004878 9.9e-60 234.2 220 57.3
AUR62007107 Chenopodium quinoa HOM05D004152 ORTHO05D004878 2.9e-59 232.6 217 59.0
Ah.12g054180 Amaranthus hybridus HOM05D004152 ORTHO05D004878 2.4e-58 229.6 221 57.0
EL10Ac5g12362 Beta vulgaris HOM05D004152 ORTHO05D004878 1.9e-55 219.9 228 56.6
Hund14573 Selenicereus undatus HOM05D004152 ORTHO05D004878 5.6e-55 218.4 187 61.5
HanXRQChr13g0417841 Helianthus annuus HOM05D004152 ORTHO05D004878 6.2e-54 214.9 217 56.2
Sc10g0005540 Simmondsia chinensis HOM05D004152 ORTHO05D004878 4.0e-53 212.2 226 53.1
Thecc.02G150400 Theobroma cacao HOM05D004152 ORTHO05D004878 5.2e-53 211.8 212 55.7
COL.COLO4_08312 Corchorus olitorius HOM05D004152 ORTHO05D004878 4.4e-52 208.8 202 56.4
MELO3C005518.2 Cucumis melo HOM05D004152 ORTHO05D004878 5.8e-52 208.4 226 50.9
Gorai.012G137200 Gossypium raimondii HOM05D004152 ORTHO05D004878 1.3e-51 207.2 202 55.9
DCAR_008502 Daucus carota HOM05D004152 ORTHO05D004878 1.7e-51 206.8 220 52.7
Duzib052G0353 Durio zibethinus HOM05D004152 ORTHO05D004878 2.2e-51 206.5 203 56.7
Gohir.A04G110300 Gossypium hirsutum HOM05D004152 ORTHO05D004878 2.2e-51 206.5 230 51.7
Nitab4.5_0000618g0090 Nicotiana tabacum HOM05D004152 ORTHO05D004878 2.2e-51 206.5 232 54.7
Aqoxy7G00694 Aquilegia oxysepala HOM05D004152 ORTHO05D004878 3.8e-51 205.7 219 51.6
Gohir.D04G150500 Gossypium hirsutum HOM05D004152 ORTHO05D004878 3.8e-51 205.7 202 55.4
Gohir.D04G150600 Gossypium hirsutum HOM05D004152 ORTHO05D004878 3.8e-51 205.7 202 55.4
CSS0047405 Camellia sinensis var. sinensis HOM05D004152 ORTHO05D004878 6.4e-51 204.9 151 64.9
QL12p011587 Quercus lobata HOM05D004152 ORTHO05D004878 8.4e-51 204.5 231 49.4
Manes.01G082700 Manihot esculenta HOM05D004152 ORTHO05D004878 1.1e-50 204.1 230 49.1
Lj2C222T2 Lonicera japonica HOM05D004152 ORTHO05D004878 3.2e-50 202.6 220 53.6
Medtr4g011180 Medicago truncatula HOM05D004152 ORTHO05D004878 3.2e-50 202.6 224 51.3
Nn6g33894 Nelumbo nucifera HOM05D004152 ORTHO05D004878 3.2e-50 202.6 227 49.8
Nitab4.5_0002881g0050 Nicotiana tabacum HOM05D004152 ORTHO05D004878 4.2e-50 202.2 232 53.9
HanXRQChr03g0088791 Helianthus annuus HOM05D004152 ORTHO05D004878 5.4e-50 201.8 224 53.1
ClCG01G004210 Citrullus lanatus HOM05D004152 ORTHO05D004878 7.1e-50 201.4 226 50.9
Haze_18794 Corylus avellana HOM05D004152 ORTHO05D004878 7.1e-50 201.4 183 59.0
Gorai.005G214700 Gossypium raimondii HOM05D004152 ORTHO05D004878 9.3e-50 201.1 229 52.0
Peaxi162Scf01022g00023 Petunia axillaris HOM05D004152 ORTHO05D004878 9.3e-50 201.1 230 52.2
Sopen06g020930 Solanum pennellii HOM05D004152 ORTHO05D004878 9.3e-50 201.1 202 55.9
FAN08G2273 Fragaria x ananassa HOM05D004152 ORTHO05D004878 1.2e-49 200.7 229 50.7
arahy.Tifrunner.gnm1.ann1.HAI1EF Arachis hypogaea HOM05D004152 ORTHO05D004878 1.6e-49 200.3 206 52.9
FAN13G0727 Fragaria x ananassa HOM05D004152 ORTHO05D004878 1.6e-49 200.3 223 50.2
Actinidia10839 Actinidia chinensis HOM05D004152 ORTHO05D004878 3.5e-49 199.1 227 54.2
TWI60G0584 Tripterygium wilfordii HOM05D004152 ORTHO05D004878 3.5e-49 199.1 229 48.5
Ca_20428_v3 Cicer arietinum L. HOM05D004152 ORTHO05D004878 4.6e-49 198.7 227 50.7
FAN04G2897 Fragaria x ananassa HOM05D004152 ORTHO05D004878 4.6e-49 198.7 226 49.6
MD06G1055800 Malus domestica HOM05D004152 ORTHO05D004878 6.0e-49 198.4 225 51.6
Solyc06g060790.1 Solanum lycopersicum HOM05D004152 ORTHO05D004878 6.0e-49 198.4 203 55.2
Prupe.5G066300 Prunus persica HOM05D004152 ORTHO05D004878 7.8e-49 198.0 216 50.9
CsaV3_5G004400 Cucumis sativus L. HOM05D004152 ORTHO05D004878 1.0e-48 197.6 222 50.5
PGSC0003DMG400024154 Solanum tuberosum HOM05D004152 ORTHO05D004878 1.0e-48 197.6 224 53.1
Aa31LG1G24900 Aethionema arabicum HOM05D004152 ORTHO05D004878 1.3e-48 197.2 194 54.1
Aqoxy7G00850 Aquilegia oxysepala HOM05D004152 ORTHO05D004878 2.3e-48 196.4 233 47.2
CANSAT21G2552 Cannabis sativa HOM05D004152 ORTHO05D004878 2.3e-48 196.4 229 50.2
Gohir.D02G191900 Gossypium hirsutum HOM05D004152 ORTHO05D004878 2.3e-48 196.4 229 51.5
Sabra03G0074600 Salix brachista HOM05D004152 ORTHO05D004878 2.3e-48 196.4 226 49.6
THA.LOC104824129 Tarenaya hassleriana HOM05D004152 ORTHO05D004878 2.3e-48 196.4 203 52.2
FAN18G1702 Fragaria x ananassa HOM05D004152 ORTHO05D004878 3.0e-48 196.1 223 50.2
MD04G1062100 Malus domestica HOM05D004152 ORTHO05D004878 3.0e-48 196.1 225 51.1
Sed0004379 Sechium edule HOM05D004152 ORTHO05D004878 3.0e-48 196.1 229 49.3
TAR629G1833 Trochodendron aralioides HOM05D004152 ORTHO05D004878 3.9e-48 195.7 209 52.2
Psat7g255640 Pisum sativum HOM05D004152 ORTHO05D004878 5.1e-48 195.3 208 50.0
Sp4g25220 Schrenkiella parvula HOM05D004152 ORTHO05D004878 6.6e-48 194.9 154 61.7
CiPaw.16G091100 Carya illinoinensis HOM05D004152 ORTHO05D004878 8.7e-48 194.5 151 62.3
DCAR_002274 Daucus carota HOM05D004152 ORTHO05D004878 8.7e-48 194.5 221 49.8
Lj3g0007947 Lotus japonicus HOM05D004152 ORTHO05D004878 8.7e-48 194.5 223 50.2
Potri.003G107800 Populus trichocarpa HOM05D004152 ORTHO05D004878 8.7e-48 194.5 204 53.4
CAN.G62.23 Capsicum annuum HOM05D004152 ORTHO05D004878 1.1e-47 194.1 163 62.0
CDE11G0751 Ceratophyllum demersum HOM05D004152 ORTHO05D004878 1.1e-47 194.1 221 51.1
Dinv39162 Davidia involucrata HOM05D004152 ORTHO05D004878 1.1e-47 194.1 147 63.9
Lalb_Chr25g0279491 Lupinus albus HOM05D004152 ORTHO05D004878 1.1e-47 194.1 199 51.8
Atru.chr9.1286 Acer truncatum HOM05D004152 ORTHO05D004878 1.5e-47 193.7 225 49.3
MSTRG.12117 Avicennia marina HOM05D004152 ORTHO05D004878 1.5e-47 193.7 166 60.8
ECA240G2077 Erigeron canadensis HOM05D004152 ORTHO05D004878 1.5e-47 193.7 211 53.1
Thhalv10017142m.g Eutrema salsugineum HOM05D004152 ORTHO05D004878 1.9e-47 193.4 153 61.4
PSO210G0624 Papaver somniferum HOM05D004152 ORTHO05D004878 1.9e-47 193.4 226 47.8
CARHR138160 Cardamine hirsuta HOM05D004152 ORTHO05D004878 2.5e-47 193.0 153 60.8
CARHR169370 Cardamine hirsuta HOM05D004152 ORTHO05D004878 2.5e-47 193.0 231 50.6
CARHR169410 Cardamine hirsuta HOM05D004152 ORTHO05D004878 2.5e-47 193.0 211 51.7
Ciclev10021871m.g Citrus clementina HOM05D004152 ORTHO05D004878 3.3e-47 192.6 222 49.5
FvH4_5g19250 Fragaria vesca HOM05D004152 ORTHO05D004878 4.3e-47 192.2 232 47.8
A03p23950 Brassica napus HOM05D004152 ORTHO05D004878 7.3e-47 191.4 222 48.6
BraA05t19344Z Brassica rapa HOM05D004152 ORTHO05D004878 7.3e-47 191.4 204 53.4
TWI81G0703 Tripterygium wilfordii HOM05D004152 ORTHO05D004878 7.3e-47 191.4 218 50.5
AT2G43090 Arabidopsis thaliana HOM05D004152 ORTHO05D004878 9.6e-47 191.0 229 50.2
BolC4t22054H Brassica oleracea HOM05D004152 ORTHO05D004878 1.3e-46 190.7 208 52.9
PGR031G2826 Punica granatum HOM05D004152 ORTHO05D004878 1.3e-46 190.7 199 51.8
unitig_899.g15440 Utricularia gibba HOM05D004152 ORTHO05D004878 1.3e-46 190.7 218 49.1
BraA03t11610Z Brassica rapa HOM05D004152 ORTHO05D004878 1.6e-46 190.3 222 48.6
Nitab4.5_0002881g0130 Nicotiana tabacum HOM05D004152 ORTHO05D004878 1.6e-46 190.3 228 49.6
SalBow6G1227 Salvia bowleyana HOM05D004152 ORTHO05D004878 1.6e-46 190.3 158 58.2
BolC3t15222H Brassica oleracea HOM05D004152 ORTHO05D004878 2.8e-46 189.5 222 48.2
Cpa.g.sc29.188 Carica papaya HOM05D004152 ORTHO05D004878 3.6e-46 189.1 216 50.9
Cfa019694 Carpinus fangiana HOM05D004152 ORTHO05D004878 3.6e-46 189.1 220 49.5
AL4G41740 Arabidopsis lyrata HOM05D004152 ORTHO05D004878 4.8e-46 188.7 227 50.7
Aa31LG10G13480 Aethionema arabicum HOM05D004152 ORTHO05D004878 6.2e-46 188.3 203 52.7
C03p28570 Brassica napus HOM05D004152 ORTHO05D004878 6.2e-46 188.3 222 48.2
Migut.A01125 Erythranthe guttata HOM05D004152 ORTHO05D004878 6.2e-46 188.3 153 61.4
VMungo0331G1163 Vigna mungo HOM05D004152 ORTHO05D004878 6.2e-46 188.3 228 47.8
AL5G40810 Arabidopsis lyrata HOM05D004152 ORTHO05D004878 8.1e-46 188.0 203 52.2
BcaC02g12415 Brassica carinata HOM05D004152 ORTHO05D004878 8.1e-46 188.0 231 49.4
Rhsim07G0110300 Rhododendron simsii HOM05D004152 ORTHO05D004878 1.1e-45 187.6 222 50.5
PSO210G4930 Papaver somniferum HOM05D004152 ORTHO05D004878 1.4e-45 187.2 219 48.4
arahy.Tifrunner.gnm1.ann1.Y2K32V Arachis hypogaea HOM05D004152 ORTHO05D004878 1.8e-45 186.8 225 47.6
Glyma.08G210500 Glycine max HOM05D004152 ORTHO05D004878 2.4e-45 186.4 196 51.0
Carub.0004s2557 Capsella rubella HOM05D004152 ORTHO05D004878 3.1e-45 186.0 222 47.7
Glyma.07G032200 Glycine max HOM05D004152 ORTHO05D004878 3.1e-45 186.0 201 49.3
BcaNung03538 Brassica carinata HOM05D004152 ORTHO05D004878 6.9e-45 184.9 210 48.6
THA.LOC104803472 Tarenaya hassleriana HOM05D004152 ORTHO05D004878 2.0e-44 183.3 211 46.9
Phvul.010G153800 Phaseolus vulgaris HOM05D004152 ORTHO05D004878 2.6e-44 183.0 216 48.6
Carub.0005s2573 Capsella rubella HOM05D004152 ORTHO05D004878 4.4e-44 182.2 156 59.6
Oeu040710.1 Olea europaea HOM05D004152 ORTHO05D004878 4.4e-44 182.2 201 50.2
SEGI_19785 Sequoiadendron giganteum HOM05D004152 ORTHO05D004878 5.8e-44 181.8 217 47.9
AT3G58990 Arabidopsis thaliana HOM05D004152 ORTHO05D004878 1.7e-43 180.3 203 50.7
SGA_v2.0_scaffold104G30172 Striga asiatica HOM05D004152 ORTHO05D004878 1.7e-43 180.3 236 47.5
Cre06.g252650 Chlamydomonas reinhardtii HOM05D004152 ORTHO05D004878 2.2e-43 179.9 150 55.3
Nitab4.5_0001410g0090 Nicotiana tabacum HOM05D004152 ORTHO05D004878 2.2e-43 179.9 213 49.8
BcaB01g01073 Brassica carinata HOM05D004152 ORTHO05D004878 8.4e-43 177.9 188 51.1
SMO274G0039 Selaginella moellendorffii HOM05D004152 ORTHO05D004878 1.9e-42 176.8 149 57.7
Sp4g25230 Schrenkiella parvula HOM05D004152 ORTHO05D004878 2.4e-42 176.4 214 45.8
Lsat_1_v5_gn_6_92521 Lactuca sativa HOM05D004152 ORTHO05D004878 5.4e-42 175.3 180 53.3
Mapoly0001s0104 Marchantia polymorpha HOM05D004152 ORTHO05D004878 5.4e-42 175.3 156 56.4
Carub.0002s0595 Capsella rubella HOM05D004152 ORTHO05D004878 7.1e-42 174.9 226 46.9
AagrBONN_evm.TU.Sc2ySwM_228.3330 Anthoceros agrestis HOM05D004152 ORTHO05D004878 2.7e-41 172.9 158 53.8
BraA05t19345Z Brassica rapa HOM05D004152 ORTHO05D004878 3.5e-41 172.6 213 47.4
Pp3c14_19120 Physcomitrium patens HOM05D004152 ORTHO05D004878 3.5e-41 172.6 150 54.7
A05p03590 Brassica napus HOM05D004152 ORTHO05D004878 4.6e-41 172.2 213 47.4
Lj8A264G55 Lonicera japonica HOM05D004152 ORTHO05D004878 1.7e-40 170.2 142 59.9
Thhalv10017125m.g Eutrema salsugineum HOM05D004152 ORTHO05D004878 2.3e-40 169.9 215 44.7
AT2G43100 Arabidopsis thaliana HOM05D004152 ORTHO05D004878 6.6e-40 168.3 217 45.2
Pp3c1_29090 Physcomitrium patens HOM05D004152 ORTHO05D004878 6.6e-40 168.3 150 53.3
CARHR138170 Cardamine hirsuta HOM05D004152 ORTHO05D004878 8.7e-40 167.9 218 44.5
AL4G41750 Arabidopsis lyrata HOM05D004152 ORTHO05D004878 1.1e-39 167.5 219 43.8
ATR0693G400 Amborella trichopoda HOM05D004152 ORTHO05D004878 2.5e-39 166.4 205 48.3
CDE11G0227 Ceratophyllum demersum HOM05D004152 ORTHO05D004878 3.3e-39 166.0 143 58.0
BcaC02g12414 Brassica carinata HOM05D004152 ORTHO05D004878 9.6e-39 164.5 231 43.7
BcaNung03539 Brassica carinata HOM05D004152 ORTHO05D004878 9.6e-39 164.5 214 43.5
Aa31LG1G24910 Aethionema arabicum HOM05D004152 ORTHO05D004878 1.3e-38 164.1 217 45.6
SalBow1G7183 Salvia bowleyana HOM05D004152 ORTHO05D004878 4.8e-38 162.2 147 55.1
Carub.0004s2558 Capsella rubella HOM05D004152 ORTHO05D004878 8.1e-38 161.4 225 43.1
Cc08_g12220 Coffea canephora HOM05D004152 ORTHO05D004878 1.4e-37 160.6 196 50.5
C04p04150 Brassica napus HOM05D004152 ORTHO05D004878 1.8e-37 160.2 231 42.0
BolC4t22055H Brassica oleracea HOM05D004152 ORTHO05D004878 1.8e-37 160.2 231 42.0
Dinv21650 Davidia involucrata HOM05D004152 ORTHO05D004878 6.9e-37 158.3 118 63.6
Zm00001eb249330 Zea mays HOM05D004152 ORTHO05D004878 9.0e-37 157.9 173 48.0
Os02g0655300 Oryza sativa ssp. japonica HOM05D004152 ORTHO05D004878 1.5e-36 157.1 159 49.7
HPP92_020921 Vanilla planifolia HOM05D004152 ORTHO05D004878 3.4e-36 156.0 216 44.9
Actinidia31515 Actinidia chinensis HOM05D004152 ORTHO05D004878 6.4e-35 151.8 175 53.7
BcaC01g05264 Brassica carinata HOM05D004152 ORTHO05D004878 1.1e-34 151.0 220 43.6
AUR62007106 Chenopodium quinoa HOM05D004152 ORTHO05D004878 6.0e-33 145.2 106 71.7
Sed0021243 Sechium edule HOM05D004152 ORTHO05D004878 4.8e-30 135.6 159 50.9
Gohir.A03G168700 Gossypium hirsutum HOM05D004152 ORTHO05D004878 8.1e-30 134.8 231 40.3
Carub.0005s2576 Capsella rubella HOM05D004152 ORTHO05D004878 1.1e-29 134.4 122 58.2
Rhsim05G0121600 Rhododendron simsii HOM05D004152 ORTHO05D004878 5.3e-29 132.1 147 49.7
SHI09309 Sapria himalayana HOM05D004152 ORTHO05D004878 3.9e-24 115.9 104 51.0
Nitab4.5_0002372g0010 Nicotiana tabacum HOM05D004152 ORTHO05D004878 4.1e-21 105.9 93 59.1
SalBow1G0783 Salvia bowleyana HOM05D001430 ORTHO05D004878 5.9e-20 102.1 79 60.8
Lj8A267T12 Lonicera japonica HOM05D004152 ORTHO05D004878 9.3e-18 94.7 211 33.6
Lsat_1_v5_gn_5_55401 Lactuca sativa HOM05D004152 ORTHO05D004878 8.7e-16 88.2 134 42.5
Lj8A266T18 Lonicera japonica HOM05D004152 ORTHO05D004878 1.9e-15 87.0 211 32.7
Rhsim03G0103100 Rhododendron simsii HOM05D004152 ORTHO05D004878 1.8e-13 80.5 95 50.5
TPR.G10893 Trifolium pratense HOM05D004152 ORTHO05D004878 6.9e-13 78.6 99 45.5
BcaB05g25308 Brassica carinata HOM05D004152 ORTHO05D004878 4.5e-12 75.9 140 37.9
Oeu047732.1 Olea europaea HOM05D004152 ORTHO05D004878 1.3e-11 74.3 232 30.2
ATR0693G063 Amborella trichopoda HOM05D004152 ORTHO05D004878 1.9e-10 70.5 123 37.4
Ah.14g083550 Amaranthus hybridus HOM05D004152 ORTHO05D004878 1.0e-08 64.7 51 56.9
C04p04140 Brassica napus HOM05D000373 ORTHO05D007048 3.9e-08 62.8 49 57.1
A05p03570 Brassica napus HOM05D000373 ORTHO05D007048 6.7e-08 62.0 49 57.1
MCO01G562 Micromonas commoda HOM05D003112 ORTHO05D003660 8.8e-08 61.6 143 30.8
PRCOL_00005264 Prasinoderma coloniale HOM05D003112 ORTHO05D003660 8.8e-08 61.6 174 28.7
Lsat_1_v5_gn_7_1160 Lactuca sativa HOM05D004152 ORTHO05D004878 1.3e-06 57.8 53 45.3
Cfa024802 Carpinus fangiana HOM05D003112 ORTHO05D003660 2.2e-06 57.0 136 34.6
GSVIVG01007403001 Vitis vinifera HOM05D004152 ORTHO05D004878 3.7e-06 56.2 201 27.9


User provided reference genes

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