Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac5g10794 Beta vulgaris HOM05D004635 ORTHO05D005899 3.7e-61 238.0 122 100.0
EL10Ac5g12781 Beta vulgaris HOM05D004635 ORTHO05D005899 1.4e-39 166.4 93 91.4
EL10Ac1g00317 Beta vulgaris HOM05D004635 ORTHO05D005899 3.4e-38 161.8 94 90.4
Sc01g0009470 Simmondsia chinensis HOM05D004635 ORTHO05D005899 2.2e-21 105.9 95 66.3
RcHm_v2.0_Chr7g0211871 Rosa chinensis HOM05D004635 ORTHO05D005899 2.9e-21 105.5 86 67.4
RcHm_v2.0_Chr7g0211921 Rosa chinensis HOM05D004635 ORTHO05D005899 2.9e-21 105.5 86 67.4
AUR62017259 Chenopodium quinoa HOM05D004635 ORTHO05D005899 1.4e-20 103.2 102 63.7
Hund11485 Selenicereus undatus HOM05D004635 ORTHO05D005899 3.2e-20 102.1 95 64.2
FAN18G0535 Fragaria x ananassa HOM05D004635 ORTHO05D005899 6.0e-19 97.8 85 67.1
AUR62010616 Chenopodium quinoa HOM05D004635 ORTHO05D005899 7.9e-19 97.4 70 77.1
FvH4_5g23090 Fragaria vesca HOM05D004635 ORTHO05D005899 7.9e-19 97.4 82 68.3
FAN04G0694 Fragaria x ananassa HOM05D004635 ORTHO05D005899 7.9e-19 97.4 82 68.3
FAN08G3353 Fragaria x ananassa HOM05D004635 ORTHO05D005899 7.9e-19 97.4 82 68.3
FAN18G1690 Fragaria x ananassa HOM05D004635 ORTHO05D005899 1.3e-18 96.7 82 68.3
FAN26G1714 Fragaria x ananassa HOM05D004635 ORTHO05D005899 1.3e-18 96.7 82 68.3
FAN28G2416 Fragaria x ananassa HOM05D004635 ORTHO05D005899 1.3e-18 96.7 82 68.3
FAN13G3179 Fragaria x ananassa HOM05D004635 ORTHO05D005899 2.3e-18 95.9 82 67.1
RcHm_v2.0_Chr7g0179141 Rosa chinensis HOM05D004635 ORTHO05D005899 6.6e-18 94.4 96 53.1
SGA_v2.0_scaffold146G36254 Striga asiatica HOM05D004635 ORTHO05D005899 2.1e-16 89.4 106 55.7
Medtr8g098490 Medicago truncatula HOM05D004635 ORTHO05D005899 1.1e-15 87.0 98 56.1
TPR.G12861 Trifolium pratense HOM05D004635 ORTHO05D005899 1.4e-15 86.7 95 56.8
GSVIVG01019776001 Vitis vinifera HOM05D004635 ORTHO05D005899 1.4e-15 86.7 101 53.5
Hma1.2p1_0377F.1_g139240 Hydrangea macrophylla HOM05D004635 ORTHO05D005899 1.8e-15 86.3 91 56.0
Sed0018462 Sechium edule HOM05D004635 ORTHO05D005899 2.4e-15 85.9 91 54.9
Dinv38955 Davidia involucrata HOM05D004635 ORTHO05D005899 3.1e-15 85.5 79 63.3
vmacro11312 Vaccinium macrocarpon HOM05D004635 ORTHO05D005899 3.1e-15 85.5 100 56.0
Lalb_Chr05g0224871 Lupinus albus HOM05D004635 ORTHO05D005899 4.0e-15 85.1 103 48.5
Atru.chr9.2220 Acer truncatum HOM05D004635 ORTHO05D005899 5.3e-15 84.7 69 66.7
COL.COLO4_34438 Corchorus olitorius HOM05D004635 ORTHO05D005899 5.3e-15 84.7 98 56.1
Peaxi162Scf00102g01512 Petunia axillaris HOM05D004635 ORTHO05D005899 6.9e-15 84.3 70 71.4
Haze_08871 Corylus avellana HOM05D004635 ORTHO05D005899 9.0e-15 84.0 91 58.2
CsaV3_5G002950 Cucumis sativus L. HOM05D004635 ORTHO05D005899 9.0e-15 84.0 84 60.7
Duzib084G1397 Durio zibethinus HOM05D004635 ORTHO05D005899 9.0e-15 84.0 93 54.8
Phvul.002G288000 Phaseolus vulgaris HOM05D004635 ORTHO05D005899 9.0e-15 84.0 97 55.7
Aa31LG9G660 Aethionema arabicum HOM05D004635 ORTHO05D005899 1.2e-14 83.6 63 65.1
MELO3C005661.2 Cucumis melo HOM05D004635 ORTHO05D005899 1.2e-14 83.6 84 59.5
Lj6A677T80 Lonicera japonica HOM05D004635 ORTHO05D005899 1.2e-14 83.6 62 75.8
arahy.Tifrunner.gnm1.ann1.MF5MQE Arachis hypogaea HOM05D004635 ORTHO05D005899 1.5e-14 83.2 111 47.7
Lj4g0017456 Lotus japonicus HOM05D004635 ORTHO05D005899 1.5e-14 83.2 108 50.0
Psat7g034520 Pisum sativum HOM05D004635 ORTHO05D005899 1.5e-14 83.2 91 54.9
Thhalv10009994m.g Eutrema salsugineum HOM05D004635 ORTHO05D005899 2.6e-14 82.4 91 49.5
HanXRQChr13g0416481 Helianthus annuus HOM05D004635 ORTHO05D005899 2.6e-14 82.4 88 60.2
Lsat_1_v5_gn_6_87181 Lactuca sativa HOM05D004635 ORTHO05D005899 2.6e-14 82.4 97 53.6
MSTRG.13840 Avicennia marina HOM05D004635 ORTHO05D005899 3.4e-14 82.0 116 50.9
Carub.0007s3429 Capsella rubella HOM05D004635 ORTHO05D005899 3.4e-14 82.0 63 66.7
Nn5g27546 Nelumbo nucifera HOM05D004635 ORTHO05D005899 3.4e-14 82.0 71 64.8
Sp7g00720 Schrenkiella parvula HOM05D004635 ORTHO05D005899 3.4e-14 82.0 63 65.1
SpUn0010_0200 Schrenkiella parvula HOM05D004635 ORTHO05D005899 3.4e-14 82.0 63 65.1
PGSC0003DMG400029793 Solanum tuberosum HOM05D004635 ORTHO05D005899 3.4e-14 82.0 80 65.0
CAN.G792.84 Capsicum annuum HOM05D004635 ORTHO05D005899 4.5e-14 81.6 98 56.1
PSO170G0760 Papaver somniferum HOM05D004635 ORTHO05D005899 4.5e-14 81.6 100 51.0
QL01p003129 Quercus lobata HOM05D004635 ORTHO05D005899 4.5e-14 81.6 99 50.5
TWI81G1014 Tripterygium wilfordii HOM05D004635 ORTHO05D005899 4.5e-14 81.6 86 59.3
arahy.Tifrunner.gnm1.ann1.BGY2GF Arachis hypogaea HOM05D004635 ORTHO05D005899 5.8e-14 81.3 111 47.7
PSO017G3139 Papaver somniferum HOM05D004635 ORTHO05D005899 5.8e-14 81.3 94 52.1
Actinidia02016 Actinidia chinensis HOM05D004635 ORTHO05D005899 7.6e-14 80.9 91 58.2
PSO339G4625 Papaver somniferum HOM05D004635 ORTHO05D005899 7.6e-14 80.9 77 58.4
AT5G41190 Arabidopsis thaliana HOM05D004635 ORTHO05D005899 9.9e-14 80.5 64 64.1
Gohir.A09G192700 Gossypium hirsutum HOM05D004635 ORTHO05D005899 9.9e-14 80.5 65 72.3
Nn1g02763 Nelumbo nucifera HOM05D004635 ORTHO05D005899 9.9e-14 80.5 71 63.4
Thecc.03G276500 Theobroma cacao HOM05D004635 ORTHO05D005899 9.9e-14 80.5 65 70.8
Eucgr.E00572 Eucalyptus grandis HOM05D004635 ORTHO05D005899 1.3e-13 80.1 68 66.2
Gohir.D09G186900 Gossypium hirsutum HOM05D004635 ORTHO05D005899 1.7e-13 79.7 65 72.3
Gorai.006G209700 Gossypium raimondii HOM05D004635 ORTHO05D005899 1.7e-13 79.7 65 72.3
Solyc08g007990.3 Solanum lycopersicum HOM05D004635 ORTHO05D005899 1.7e-13 79.7 115 49.6
Sopen08g003860 Solanum pennellii HOM05D004635 ORTHO05D005899 1.7e-13 79.7 115 49.6
Nitab4.5_0003907g0020 Nicotiana tabacum HOM05D004635 ORTHO05D005899 2.2e-13 79.3 80 62.5
RcHm_v2.0_Chr2g0099081 Rosa chinensis HOM05D004635 ORTHO05D005899 2.2e-13 79.3 75 58.7
Glyma.08G013300 Glycine max HOM05D004635 ORTHO05D005899 2.9e-13 79.0 65 67.7
THA.LOC104818064 Tarenaya hassleriana HOM05D004635 ORTHO05D005899 2.9e-13 79.0 86 58.1
VMungo0251G2718 Vigna mungo HOM05D004635 ORTHO05D005899 2.9e-13 79.0 97 50.5
Ca_17544_v3 Cicer arietinum L. HOM05D004635 ORTHO05D005899 3.8e-13 78.6 97 49.5
MBI18_g19087_MAGBIO Magnolia biondii HOM05D004635 ORTHO05D005899 3.8e-13 78.6 82 56.1
PGSC0003DMG400005819 Solanum tuberosum HOM05D004635 ORTHO05D005899 3.8e-13 78.6 98 54.1
AL7G48240 Arabidopsis lyrata HOM05D004635 ORTHO05D005899 4.9e-13 78.2 65 66.2
Cfa012156 Carpinus fangiana HOM05D004635 ORTHO05D005899 4.9e-13 78.2 91 57.1
Thhalv10027696m.g Eutrema salsugineum HOM05D004635 ORTHO05D005899 4.9e-13 78.2 83 50.6
Glyma.05G206400 Glycine max HOM05D004635 ORTHO05D005899 4.9e-13 78.2 105 50.5
Manes.01G063000 Manihot esculenta HOM05D004635 ORTHO05D005899 4.9e-13 78.2 91 56.0
BraA07t29762Z Brassica rapa HOM05D004635 ORTHO05D005899 6.4e-13 77.8 63 60.3
ECA240G4094 Erigeron canadensis HOM05D004635 ORTHO05D005899 6.4e-13 77.8 101 54.5
Potri.003G124700 Populus trichocarpa HOM05D004635 ORTHO05D005899 6.4e-13 77.8 65 67.7
PGR042G2640 Punica granatum HOM05D004635 ORTHO05D005899 6.4e-13 77.8 70 64.3
arahy.Tifrunner.gnm1.ann1.Y4HLQF Arachis hypogaea HOM05D004635 ORTHO05D005899 8.4e-13 77.4 111 45.9
CSS0019840 Camellia sinensis var. sinensis HOM05D004635 ORTHO05D005899 8.4e-13 77.4 90 55.6
TAR636G1354 Trochodendron aralioides HOM05D004635 ORTHO05D005899 8.4e-13 77.4 79 59.5
Sed0015372 Sechium edule HOM05D004635 ORTHO05D005899 1.1e-12 77.0 85 52.9
MD14G1101800 Malus domestica HOM05D004635 ORTHO05D005899 1.4e-12 76.6 61 70.5
Nitab4.5_0004836g0050 Nicotiana tabacum HOM05D004635 ORTHO05D005899 1.4e-12 76.6 64 70.3
BcaB02g07904 Brassica carinata HOM05D004635 ORTHO05D005899 2.4e-12 75.9 84 50.0
BcaC08g44516 Brassica carinata HOM05D004635 ORTHO05D005899 2.4e-12 75.9 84 50.0
BcaC08g44517 Brassica carinata HOM05D004635 ORTHO05D005899 2.4e-12 75.9 84 50.0
CiPaw.11G137400 Carya illinoinensis HOM05D004635 ORTHO05D005899 2.4e-12 75.9 93 54.8
unitig_37.g12250 Utricularia gibba HOM05D004635 ORTHO05D005899 2.4e-12 75.9 108 50.0
CANSAT78G0227 Cannabis sativa HOM05D004635 ORTHO05D005899 3.2e-12 75.5 81 59.3
TAR629G3080 Trochodendron aralioides HOM05D004635 ORTHO05D005899 3.2e-12 75.5 70 64.3
Actinidia14552 Actinidia chinensis HOM05D004635 ORTHO05D005899 4.2e-12 75.1 64 68.8
Ciclev10019281m.g Citrus clementina HOM05D004635 ORTHO05D005899 4.2e-12 75.1 82 58.5
arahy.Tifrunner.gnm1.ann1.NB74KP Arachis hypogaea HOM05D004635 ORTHO05D005899 7.1e-12 74.3 111 45.0
BcaB06g27604 Brassica carinata HOM05D004635 ORTHO05D005899 7.1e-12 74.3 64 60.9
Cpa.g.sc202.13 Carica papaya HOM05D004635 ORTHO05D005899 9.3e-12 73.9 79 58.2
SalBow6G1328 Salvia bowleyana HOM05D004635 ORTHO05D005899 9.3e-12 73.9 95 56.8
Aqoxy5G04278 Aquilegia oxysepala HOM05D004635 ORTHO05D005899 1.6e-11 73.2 76 60.5
PSO384G0809 Papaver somniferum HOM05D004635 ORTHO05D005899 1.6e-11 73.2 93 48.4
Sabra03G0088200 Salix brachista HOM05D004635 ORTHO05D005899 3.5e-11 72.0 91 48.4
A07p20710 Brassica napus HOM05D004635 ORTHO05D005899 6.0e-11 71.2 64 57.8
Carub.0004s0410 Capsella rubella HOM05D004635 ORTHO05D005899 6.0e-11 71.2 96 43.8
BcaC02g08976 Brassica carinata HOM05D004635 ORTHO05D005899 7.9e-11 70.9 85 50.6
C04p48290 Brassica napus HOM05D004635 ORTHO05D005899 7.9e-11 70.9 85 50.6
BolC4t26422H Brassica oleracea HOM05D004635 ORTHO05D005899 7.9e-11 70.9 85 50.6
ClCG01G002860 Citrullus lanatus HOM05D004635 ORTHO05D005899 1.3e-10 70.1 48 77.1
CARHR213190 Cardamine hirsuta HOM05D004635 ORTHO05D005899 3.0e-10 68.9 67 50.7
HPP92_020857 Vanilla planifolia HOM05D004635 ORTHO05D005899 3.0e-10 68.9 70 57.1
Prupe.5G097400 Prunus persica HOM05D004635 ORTHO05D005899 8.7e-10 67.4 47 78.7
Lj2C188G13 Lonicera japonica HOM05D004635 ORTHO05D005899 1.1e-09 67.0 48 70.8
Cc08_g14490 Coffea canephora HOM05D004635 ORTHO05D005899 1.5e-09 66.6 105 44.8
A04p14360 Brassica napus HOM05D004635 ORTHO05D005899 7.4e-09 64.3 103 42.7
BraA04t17085Z Brassica rapa HOM05D004635 ORTHO05D005899 7.4e-09 64.3 103 42.7
Migut.A00784 Erythranthe guttata HOM05D004635 ORTHO05D005899 1.3e-08 63.5 94 48.9
SEGI_23350 Sequoiadendron giganteum HOM05D004635 ORTHO05D005899 1.6e-08 63.2 70 51.4
CDE06G0591 Ceratophyllum demersum HOM05D004635 ORTHO05D005899 2.8e-08 62.4 93 45.2
CDE05G1698 Ceratophyllum demersum HOM05D004635 ORTHO05D005899 3.7e-08 62.0 67 56.7
BolC6t37158H Brassica oleracea HOM05D004635 ORTHO05D005899 4.8e-08 61.6 43 65.1
DCAR_000603 Daucus carota HOM05D004635 ORTHO05D005899 8.1e-08 60.8 46 71.7
ATR0064G111 Amborella trichopoda HOM05D004635 ORTHO05D005899 1.4e-07 60.1 75 52.0
BolC9t58686H Brassica oleracea HOM05D004635 ORTHO05D005899 1.8e-07 59.7 101 34.7
C09p58220 Brassica napus HOM05D000111 ORTHO05D000134 4.0e-07 58.5 101 34.7
BcaC04g18687 Brassica carinata HOM05D004635 ORTHO05D005899 5.3e-07 58.2 101 34.7


User provided reference genes

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