Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA247G0375 Erigeron canadensis HOM05D006496 ORTHO05D008390 6.8e-196 687.2 360 100.0
HanXRQChr04g0106921 Helianthus annuus HOM05D006496 ORTHO05D008390 1.2e-78 297.7 362 55.0
Lsat_1_v5_gn_9_22140 Lactuca sativa HOM05D006496 ORTHO05D008390 8.4e-77 291.6 374 48.9
Lsat_1_v5_gn_5_167360 Lactuca sativa HOM05D006496 ORTHO05D008390 7.1e-68 261.9 381 42.3
ECA248G1113 Erigeron canadensis HOM05D006496 ORTHO05D008390 5.8e-54 215.7 319 42.3
HanXRQChr01g0009851 Helianthus annuus HOM05D006496 ORTHO05D008390 5.5e-52 209.1 300 43.3
HanXRQChr01g0009831 Helianthus annuus HOM05D006496 ORTHO05D008390 1.8e-50 204.1 378 37.3
CSS0000664 Camellia sinensis var. sinensis HOM05D006496 ORTHO05D008390 5.7e-49 199.1 307 41.4
Cc01_g12300 Coffea canephora HOM05D006496 ORTHO05D008390 1.5e-46 191.0 318 39.0
CSS0042381 Camellia sinensis var. sinensis HOM05D006496 ORTHO05D008390 1.0e-42 178.3 314 39.2
Actinidia37238 Actinidia chinensis HOM05D006496 ORTHO05D008390 3.0e-42 176.8 325 36.9
Rhsim13G0086700 Rhododendron simsii HOM05D006496 ORTHO05D008390 3.0e-42 176.8 313 37.1
CAN.G420.5 Capsicum annuum HOM05D006496 ORTHO05D008390 1.1e-39 168.3 310 37.1
vmacro03111 Vaccinium macrocarpon HOM05D006496 ORTHO05D008390 4.5e-38 162.9 313 34.2
Oeu058535.1 Olea europaea HOM05D006496 ORTHO05D008390 2.5e-36 157.1 311 36.7
Sopen11g030740 Solanum pennellii HOM05D006496 ORTHO05D008390 1.6e-35 154.5 324 35.2
Actinidia07064 Actinidia chinensis HOM05D006496 ORTHO05D008390 2.1e-35 154.1 324 35.5
Lj2A1055T49 Lonicera japonica HOM05D006496 ORTHO05D008390 2.7e-35 153.7 335 33.4
SalBow3G1961 Salvia bowleyana HOM05D006496 ORTHO05D008390 1.0e-34 151.8 298 35.9
Nitab4.5_0003498g0030 Nicotiana tabacum HOM05D006496 ORTHO05D008390 2.5e-33 147.1 317 35.3
Migut.D02127 Erythranthe guttata HOM05D006496 ORTHO05D008390 1.7e-32 144.4 296 33.8
Nitab4.5_0009215g0030 Nicotiana tabacum HOM05D006496 ORTHO05D008390 1.4e-31 141.4 311 36.7
AUR62001835 Chenopodium quinoa HOM05D006496 ORTHO05D008390 1.3e-29 134.8 303 32.7
AUR62009623 Chenopodium quinoa HOM05D006496 ORTHO05D008390 2.9e-29 133.7 303 32.3
QL01p033240 Quercus lobata HOM05D006496 ORTHO05D008390 2.9e-29 133.7 363 30.6
QL01p033291 Quercus lobata HOM05D006496 ORTHO05D008390 2.9e-29 133.7 363 30.6
PGSC0003DMG400015535 Solanum tuberosum HOM05D006496 ORTHO05D008390 2.9e-29 133.7 168 44.6
MD03G1099500 Malus domestica HOM05D006496 ORTHO05D008390 6.5e-29 132.5 310 31.3
Peaxi162Scf00411g00117 Petunia axillaris HOM05D006496 ORTHO05D008390 1.1e-28 131.7 240 37.5
Prupe.6G084300 Prunus persica HOM05D006496 ORTHO05D008390 2.7e-27 127.1 317 31.2
Hund04996 Selenicereus undatus HOM05D006496 ORTHO05D008390 1.0e-26 125.2 311 31.5
Hma1.2p1_0035F.1_g022050 Hydrangea macrophylla HOM05D006496 ORTHO05D008390 8.8e-26 122.1 301 29.2
DCAR_018892 Daucus carota HOM05D006496 ORTHO05D008390 2.0e-25 120.9 121 52.9
Ciclev10028859m.g Citrus clementina HOM05D006496 ORTHO05D008390 3.7e-24 116.7 326 28.8
SGA_v2.0_scaffold61G21263 Striga asiatica HOM05D006496 ORTHO05D008390 3.7e-24 116.7 162 40.1
FAN11G0827 Fragaria x ananassa HOM05D006496 ORTHO05D008390 1.8e-23 114.4 338 28.7
Prupe.6G084200 Prunus persica HOM05D006496 ORTHO05D008390 3.1e-23 113.6 312 31.1
DCAR_015607 Daucus carota HOM05D006496 ORTHO05D008390 4.1e-23 113.2 214 34.6
MD11G1113700 Malus domestica HOM05D006496 ORTHO05D008390 4.1e-23 113.2 321 28.0
Ah.08g218920 Amaranthus hybridus HOM05D006496 ORTHO05D008390 5.3e-23 112.8 300 30.7
Solyc11g073080.3 Solanum lycopersicum HOM05D006496 ORTHO05D008390 1.2e-22 111.7 249 34.9
MD03G1099400 Malus domestica HOM05D006496 ORTHO05D008390 4.5e-22 109.8 315 29.2
RcHm_v2.0_Chr5g0062921 Rosa chinensis HOM05D006496 ORTHO05D008390 5.9e-22 109.4 364 28.0
Atru.chr3.3823 Acer truncatum HOM05D006496 ORTHO05D008390 7.7e-22 109.0 351 28.5
FAN11G2800 Fragaria x ananassa HOM05D006496 ORTHO05D008390 7.7e-22 109.0 306 30.1
RcHm_v2.0_Chr5g0062931 Rosa chinensis HOM05D006496 ORTHO05D008390 1.7e-21 107.8 360 27.8
CiPaw.13G099300 Carya illinoinensis HOM05D006496 ORTHO05D008390 2.2e-21 107.5 372 27.2
FvH4_3g35002 Fragaria vesca HOM05D006496 ORTHO05D008390 1.1e-20 105.1 333 28.2
FAN25G3002 Fragaria x ananassa HOM05D006496 ORTHO05D008390 2.5e-20 104.0 333 27.9
CARHR273380 Cardamine hirsuta HOM05D006496 ORTHO05D008390 3.2e-20 103.6 306 28.4
AL8G36350 Arabidopsis lyrata HOM05D006496 ORTHO05D008390 3.6e-19 100.1 302 27.2
FvH4_3g35010 Fragaria vesca HOM05D006496 ORTHO05D008390 3.6e-19 100.1 353 27.2
CSS0005064 Camellia sinensis var. sinensis HOM05D006496 ORTHO05D008390 8.0e-19 99.0 126 46.8
GSVIVG01025031001 Vitis vinifera HOM05D006496 ORTHO05D008390 8.0e-19 99.0 302 27.5
AT5G59800 Arabidopsis thaliana HOM05D006496 ORTHO05D008390 1.4e-18 98.2 300 26.7
BcaB08g36218 Brassica carinata HOM05D006496 ORTHO05D008390 6.7e-18 95.9 304 28.0
BolC9t58098H Brassica oleracea HOM05D006496 ORTHO05D008390 1.1e-17 95.1 309 26.9
BraA10t43786Z Brassica rapa HOM05D006496 ORTHO05D008390 1.1e-17 95.1 309 26.9
MSTRG.21184 Avicennia marina HOM05D006496 ORTHO05D008390 1.5e-17 94.7 116 48.3
Carub.0008s2046 Capsella rubella HOM05D006496 ORTHO05D008390 2.0e-17 94.4 312 27.2
Sp6g21470 Schrenkiella parvula HOM05D006496 ORTHO05D008390 2.6e-17 94.0 311 26.4
Lj3g0009171 Lotus japonicus HOM05D006496 ORTHO05D008390 3.3e-17 93.6 169 37.3
BcaC04g19631 Brassica carinata HOM05D006496 ORTHO05D008390 9.7e-17 92.0 309 27.2
A10p17060 Brassica napus HOM05D006496 ORTHO05D008390 1.3e-16 91.7 300 26.7
C09p52290 Brassica napus HOM05D006496 ORTHO05D008390 1.3e-16 91.7 309 26.9
Dinv06145 Davidia involucrata HOM05D006496 ORTHO05D008390 1.7e-16 91.3 172 36.0
FAN16G0777 Fragaria x ananassa HOM05D006496 ORTHO05D008390 1.7e-16 91.3 337 27.9
Manes.04G031000 Manihot esculenta HOM05D006496 ORTHO05D008390 6.3e-16 89.4 169 35.5
Medtr2g096520 Medicago truncatula HOM05D006496 ORTHO05D008390 8.2e-16 89.0 336 27.1
FAN21G2388 Fragaria x ananassa HOM05D006496 ORTHO05D008390 1.1e-15 88.6 208 31.7
FAN16G2573 Fragaria x ananassa HOM05D006496 ORTHO05D008390 1.4e-15 88.2 357 25.5
Potri.009G027600 Populus trichocarpa HOM05D006496 ORTHO05D008390 1.4e-15 88.2 184 33.2
FAN21G0875 Fragaria x ananassa HOM05D006496 ORTHO05D008390 1.8e-15 87.8 374 25.9
EL10Ac7g15965 Beta vulgaris HOM05D006496 ORTHO05D008390 5.3e-15 86.3 301 25.6
Thhalv10014093m.g Eutrema salsugineum HOM05D006496 ORTHO05D008390 9.1e-15 85.5 311 25.7
Phvul.004G007200 Phaseolus vulgaris HOM05D006496 ORTHO05D008390 1.6e-14 84.7 205 29.8
Lalb_Chr22g0349991 Lupinus albus HOM05D006496 ORTHO05D008390 2.7e-14 84.0 209 29.7
Duzib168G2252 Durio zibethinus HOM05D006496 ORTHO05D008390 3.5e-14 83.6 224 29.0
TWI75G0988 Tripterygium wilfordii HOM05D006496 ORTHO05D008390 4.5e-14 83.2 313 26.2
C03p13280 Brassica napus HOM05D006496 ORTHO05D008390 1.0e-13 82.0 327 25.1
Ca_01342_v3 Cicer arietinum L. HOM05D006496 ORTHO05D008390 1.3e-13 81.6 188 33.0
FAN25G1110 Fragaria x ananassa HOM05D006496 ORTHO05D008390 1.7e-13 81.3 222 31.1
BcaC01g06549 Brassica carinata HOM05D006496 ORTHO05D008390 2.2e-13 80.9 325 25.2
A03p11480 Brassica napus HOM05D006496 ORTHO05D008390 8.5e-13 79.0 322 24.5
Psat5g284120 Pisum sativum HOM05D006496 ORTHO05D008390 1.1e-12 78.6 202 31.7
Glyma.07G118700 Glycine max HOM05D006496 ORTHO05D008390 1.9e-12 77.8 230 27.8
BolC3t13791H Brassica oleracea HOM05D006496 ORTHO05D008390 7.2e-12 75.9 181 29.3
BraA03t10462Z Brassica rapa HOM05D006496 ORTHO05D008390 1.6e-11 74.7 178 28.1
Sc06g0008220 Simmondsia chinensis HOM05D006496 ORTHO05D008390 2.1e-11 74.3 201 30.3
Aa31sc23G160 Aethionema arabicum HOM05D006496 ORTHO05D008390 2.7e-11 73.9 147 30.6
Cpa.g.sc190.31 Carica papaya HOM05D006496 ORTHO05D008390 3.6e-11 73.6 240 29.6
arahy.Tifrunner.gnm1.ann1.4RYS79 Arachis hypogaea HOM05D006496 ORTHO05D008390 8.0e-11 72.4 232 24.1
THA.LOC104810806 Tarenaya hassleriana HOM05D006496 ORTHO05D008390 8.0e-11 72.4 149 30.9
VMungo0464G2068 Vigna mungo HOM05D006496 ORTHO05D008390 8.0e-11 72.4 219 26.9
MSTRG.21183 Avicennia marina HOM05D006496 ORTHO05D008390 1.0e-10 72.0 172 31.4
VMungo1080G1046 Vigna mungo HOM05D006496 ORTHO05D008390 1.0e-10 72.0 203 29.6
Dinv06143 Davidia involucrata HOM05D021242 ORTHO05D022491 1.4e-10 71.6 101 48.5
Phvul.004G006200 Phaseolus vulgaris HOM05D006496 ORTHO05D008390 2.3e-10 70.9 203 27.1
Psat5g284080 Pisum sativum HOM05D006496 ORTHO05D008390 8.8e-10 68.9 163 30.7
COL.COLO4_18451 Corchorus olitorius HOM05D006496 ORTHO05D008390 1.2e-09 68.6 69 52.2
Glyma.13G333300 Glycine max HOM05D006496 ORTHO05D008390 2.0e-09 67.8 69 53.6
Sp6g21060 Schrenkiella parvula HOM05D004190 ORTHO05D004692 2.6e-09 67.4 159 35.2
arahy.Tifrunner.gnm1.ann1.7PT1R0 Arachis hypogaea HOM05D006496 ORTHO05D008390 7.5e-09 65.9 64 50.0
Lj3g0006193 Lotus japonicus HOM05D006496 ORTHO05D008390 7.5e-09 65.9 46 67.4
Oeu049557.4 Olea europaea HOM05D003520 ORTHO05D003332 3.7e-08 63.5 235 26.8
Gohir.A13G227300 Gossypium hirsutum HOM05D004190 ORTHO05D004692 4.8e-08 63.2 142 32.4
Manes.01G173632 Manihot esculenta HOM05D004190 ORTHO05D004692 6.3e-08 62.8 142 33.1
QL01p033212 Quercus lobata HOM05D006496 ORTHO05D008390 1.1e-07 62.0 76 43.4
Thecc.09G327500 Theobroma cacao HOM05D006496 ORTHO05D008390 1.4e-07 61.6 117 34.2
TPR.G34315 Trifolium pratense HOM05D006496 ORTHO05D008390 1.4e-07 61.6 47 66.0
Gohir.D13G232900 Gossypium hirsutum HOM05D004190 ORTHO05D004692 1.8e-07 61.2 142 32.4
Gorai.013G263700 Gossypium raimondii HOM05D004190 ORTHO05D004692 1.8e-07 61.2 142 32.4
Medtr4g008590 Medicago truncatula HOM05D006496 ORTHO05D008390 1.8e-07 61.2 86 41.9
TWI31G0695 Tripterygium wilfordii HOM05D006496 ORTHO05D008390 4.1e-07 60.1 83 43.4
COL.COLO4_18512 Corchorus olitorius HOM05D004190 ORTHO05D004692 1.2e-06 58.5 147 30.6
MD11G1107500 Malus domestica HOM05D004190 ORTHO05D004692 2.7e-06 57.4 150 28.7
Prupe.6G084500 Prunus persica HOM05D006496 ORTHO05D008390 3.5e-06 57.0 50 58.0


User provided reference genes

Program Settings