Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA240G2604 Erigeron canadensis HOM05D005363 ORTHO05D006607 0.0e+00 1363.2 724 100.0
HanXRQChr03g0077211 Helianthus annuus HOM05D005363 ORTHO05D006607 0.0e+00 1207.2 728 86.7
Lsat_1_v5_gn_9_95600 Lactuca sativa HOM05D005363 ORTHO05D006607 0.0e+00 1178.7 728 87.6
CSS0003917 Camellia sinensis var. sinensis HOM05D005363 ORTHO05D006607 0.0e+00 1078.2 716 79.3
CiPaw.11G177000 Carya illinoinensis HOM05D005363 ORTHO05D006607 1.0e-307 1059.7 729 76.1
Thecc.07G070700 Theobroma cacao HOM05D005363 ORTHO05D006607 8.1e-305 1050.0 734 76.0
CANSAT11G0579 Cannabis sativa HOM05D005363 ORTHO05D006607 1.4e-304 1049.3 729 76.0
MSTRG.5819 Avicennia marina HOM05D005363 ORTHO05D006607 7.6e-303 1043.5 737 74.5
Actinidia35283 Actinidia chinensis HOM05D005363 ORTHO05D006607 3.8e-302 1041.2 731 75.8
Oeu009902.1 Olea europaea HOM05D005363 ORTHO05D006607 1.2e-300 1036.2 736 77.0
TAR629G3355 Trochodendron aralioides HOM05D005363 ORTHO05D006607 1.2e-300 1036.2 730 75.2
Duzib170G0704 Durio zibethinus HOM05D005363 ORTHO05D006607 6.0e-300 1033.9 727 75.9
GSVIVG01014441001 Vitis vinifera HOM05D005363 ORTHO05D006607 7.8e-300 1033.5 732 76.6
Potri.001G407300 Populus trichocarpa HOM05D005363 ORTHO05D006607 3.0e-299 1031.6 733 75.4
Manes.15G082900 Manihot esculenta HOM05D005363 ORTHO05D006607 1.1e-298 1029.6 731 74.7
COL.COLO4_09485 Corchorus olitorius HOM05D005363 ORTHO05D006607 1.5e-298 1029.2 733 76.0
Dinv08347 Davidia involucrata HOM05D005363 ORTHO05D006607 7.3e-298 1026.9 748 75.9
QL08p017669 Quercus lobata HOM05D005363 ORTHO05D006607 2.1e-297 1025.4 783 70.4
Migut.J00972 Erythranthe guttata HOM05D005363 ORTHO05D006607 5.8e-295 1017.3 730 76.7
Ciclev10007579m.g Citrus clementina HOM05D005363 ORTHO05D006607 2.9e-294 1015.0 733 72.9
Prupe.4G191100 Prunus persica HOM05D005363 ORTHO05D006607 7.1e-293 1010.4 725 73.0
Cpa.g.sc12.44 Carica papaya HOM05D005363 ORTHO05D006607 5.1e-291 1004.2 721 73.8
RcHm_v2.0_Chr5g0036071 Rosa chinensis HOM05D005363 ORTHO05D006607 6.6e-291 1003.8 725 73.4
MD11G1235900 Malus domestica HOM05D005363 ORTHO05D006607 8.7e-291 1003.4 728 74.2
vmacro09564 Vaccinium macrocarpon HOM05D005363 ORTHO05D006607 5.6e-290 1000.7 685 77.2
PSO210G7030 Papaver somniferum HOM05D005363 ORTHO05D006607 2.1e-289 998.8 736 72.3
Gorai.009G430700 Gossypium raimondii HOM05D005363 ORTHO05D006607 4.8e-289 997.7 730 74.0
SGA_v2.0_scaffold13G06767 Striga asiatica HOM05D005363 ORTHO05D006607 2.4e-288 995.3 743 73.6
Sc03g0009580 Simmondsia chinensis HOM05D005363 ORTHO05D006607 3.1e-288 995.0 730 74.7
Gohir.D05G362100 Gossypium hirsutum HOM05D005363 ORTHO05D006607 5.3e-288 994.2 730 73.7
PSO832G2870 Papaver somniferum HOM05D005363 ORTHO05D006607 6.9e-288 993.8 739 72.3
arahy.Tifrunner.gnm1.ann1.42XSYF Arachis hypogaea HOM05D005363 ORTHO05D006607 7.6e-287 990.3 721 75.2
SalBow3G2312 Salvia bowleyana HOM05D005363 ORTHO05D006607 9.9e-287 989.9 754 70.8
Glyma.12G219100 Glycine max HOM05D005363 ORTHO05D006607 4.9e-286 987.6 725 72.8
MD03G1218100 Malus domestica HOM05D005363 ORTHO05D006607 1.4e-285 986.1 728 73.5
arahy.Tifrunner.gnm1.ann1.3P80NP Arachis hypogaea HOM05D005363 ORTHO05D006607 4.2e-285 984.6 719 75.2
Sabra16G0268700 Salix brachista HOM05D005363 ORTHO05D006607 1.0e-283 979.9 720 73.6
Lalb_Chr25g0286791 Lupinus albus HOM05D005363 ORTHO05D006607 1.8e-283 979.2 727 73.3
Hma1.2p1_1176F.1_g264200 Hydrangea macrophylla HOM05D005363 ORTHO05D006607 2.3e-283 978.8 781 70.7
Nn1g03887 Nelumbo nucifera HOM05D005363 ORTHO05D006607 3.9e-283 978.0 729 73.8
PGR083G1158 Punica granatum HOM05D005363 ORTHO05D006607 6.7e-283 977.2 733 71.6
Aqoxy1G03881 Aquilegia oxysepala HOM05D005363 ORTHO05D006607 2.8e-281 971.8 730 73.4
Phvul.005G085700 Phaseolus vulgaris HOM05D005363 ORTHO05D006607 8.1e-281 970.3 726 73.1
ClCG11G018480 Citrullus lanatus HOM05D005363 ORTHO05D006607 6.9e-280 967.2 720 72.5
FAN21G3123 Fragaria x ananassa HOM05D005363 ORTHO05D006607 2.0e-279 965.7 722 71.5
Psat2g184560 Pisum sativum HOM05D005363 ORTHO05D006607 4.5e-279 964.5 718 73.4
CsaV3_3G044350 Cucumis sativus L. HOM05D005363 ORTHO05D006607 3.8e-278 961.4 727 71.7
Sed0012869 Sechium edule HOM05D005363 ORTHO05D006607 6.4e-278 960.7 714 72.5
Lj3g0015043 Lotus japonicus HOM05D005363 ORTHO05D006607 1.4e-277 959.5 727 70.8
Sabra16G0270900 Salix brachista HOM05D005363 ORTHO05D006607 4.2e-277 958.0 667 75.3
EL10Ac4g08052 Beta vulgaris HOM05D005363 ORTHO05D006607 1.6e-276 956.1 762 67.7
FvH4_3g21040 Fragaria vesca HOM05D005363 ORTHO05D006607 4.6e-276 954.5 727 70.8
FAN11G3021 Fragaria x ananassa HOM05D005363 ORTHO05D006607 4.6e-276 954.5 727 70.8
CAN.G824.3 Capsicum annuum HOM05D005363 ORTHO05D006607 1.8e-275 952.6 669 74.4
Medtr2g081100 Medicago truncatula HOM05D005363 ORTHO05D006607 1.8e-275 952.6 711 72.3
Gohir.D01G056400 Gossypium hirsutum HOM05D005363 ORTHO05D006607 1.3e-273 946.4 712 72.3
Aa31LG3G10220 Aethionema arabicum HOM05D005363 ORTHO05D006607 3.7e-273 944.9 726 70.8
Lj8C160T16 Lonicera japonica HOM05D005363 ORTHO05D006607 3.7e-273 944.9 740 71.9
RhsimUnG0258300 Rhododendron simsii HOM05D005363 ORTHO05D006607 9.0e-272 940.3 667 72.4
Hund02186 Selenicereus undatus HOM05D005363 ORTHO05D006607 1.2e-271 939.9 752 69.5
Sopen09g004090 Solanum pennellii HOM05D005363 ORTHO05D006607 4.5e-271 937.9 580 79.7
Haze_09533 Corylus avellana HOM05D005363 ORTHO05D006607 7.6e-271 937.2 799 66.7
DCAR_018424 Daucus carota HOM05D005363 ORTHO05D006607 1.1e-269 933.3 637 77.1
HPP92_026561 Vanilla planifolia HOM05D005363 ORTHO05D006607 2.5e-269 932.2 683 71.0
CARHR267540 Cardamine hirsuta HOM05D005363 ORTHO05D006607 1.6e-268 929.5 729 68.9
FAN25G3415 Fragaria x ananassa HOM05D005363 ORTHO05D006607 1.6e-268 929.5 728 69.5
Sp6g16300 Schrenkiella parvula HOM05D005363 ORTHO05D006607 1.6e-268 929.5 726 71.3
AT5G54260 Arabidopsis thaliana HOM05D005363 ORTHO05D006607 7.9e-268 927.2 728 71.6
Carub.0008s1460 Capsella rubella HOM05D005363 ORTHO05D006607 3.3e-266 921.8 610 77.2
Thhalv10012804m.g Eutrema salsugineum HOM05D005363 ORTHO05D006607 5.7e-266 921.0 727 70.6
ATR0693G020 Amborella trichopoda HOM05D005363 ORTHO05D006607 2.8e-265 918.7 714 69.2
TPR.G32857 Trifolium pratense HOM05D005363 ORTHO05D006607 8.2e-265 917.1 723 70.3
HPP92_026534 Vanilla planifolia HOM05D005363 ORTHO05D006607 2.4e-264 915.6 724 67.3
BcaC04g20356 Brassica carinata HOM05D005363 ORTHO05D006607 3.4e-263 911.8 726 69.8
Gorai.002G076500 Gossypium raimondii HOM05D005363 ORTHO05D006607 5.9e-263 911.0 730 69.5
Peaxi162Scf00290g00111 Petunia axillaris HOM05D005363 ORTHO05D006607 7.7e-263 910.6 622 76.2
BcaB08g35781 Brassica carinata HOM05D005363 ORTHO05D006607 6.5e-262 907.5 726 70.1
MBI15_g19746_MAGBIO Magnolia biondii HOM05D005363 ORTHO05D006607 4.2e-261 904.8 664 71.2
AL8G29590 Arabidopsis lyrata HOM05D005363 ORTHO05D006607 5.5e-261 904.4 706 70.5
BolC9t57330H Brassica oleracea HOM05D005363 ORTHO05D006607 5.1e-259 897.9 733 69.0
BraA10t43250Z Brassica rapa HOM05D005363 ORTHO05D006607 1.1e-258 896.7 733 69.0
Os04g0635900 Oryza sativa ssp. japonica HOM05D005363 ORTHO05D006607 7.4e-258 894.0 723 66.8
Cc06_g05460 Coffea canephora HOM05D005363 ORTHO05D006607 1.8e-256 889.4 504 84.9
SHI33827 Sapria himalayana HOM05D005363 ORTHO05D006607 3.1e-256 888.6 721 64.8
THA.LOC104813315 Tarenaya hassleriana HOM05D005363 ORTHO05D006607 1.2e-255 886.7 520 81.9
unitig_8.g4146 Utricularia gibba HOM05D005363 ORTHO05D006607 3.4e-255 885.2 729 65.0
C09p44570 Brassica napus HOM05D005363 ORTHO05D006607 4.7e-252 874.8 752 67.2
A10p11550 Brassica napus HOM05D005363 ORTHO05D006607 1.0e-251 873.6 754 67.0
Gohir.A04G025700 Gossypium hirsutum HOM05D005363 ORTHO05D006607 1.8e-251 872.8 743 67.2
Zm00001eb069270 Zea mays HOM05D005363 ORTHO05D006607 8.8e-251 870.5 721 65.6
MELO3C018187.2 Cucumis melo HOM05D005363 ORTHO05D006607 3.5e-239 832.0 727 64.6
VMungo1080G1535 Vigna mungo HOM05D005363 ORTHO05D006607 4.5e-239 831.6 472 84.1
AUR62029306 Chenopodium quinoa HOM05D005363 ORTHO05D006607 2.2e-238 829.3 797 58.3
Gohir.A04G026000 Gossypium hirsutum HOM05D005363 ORTHO05D006607 1.6e-228 796.6 626 71.6
Mapoly0023s0117 Marchantia polymorpha HOM05D005363 ORTHO05D006607 4.2e-221 771.9 705 58.6
AUR62015595 Chenopodium quinoa HOM05D005363 ORTHO05D006607 2.8e-220 769.2 670 61.8
FAN16G0276 Fragaria x ananassa HOM05D005363 ORTHO05D006607 1.5e-218 763.5 731 60.9
Pp3c24_2350 Physcomitrium patens HOM05D005363 ORTHO05D006607 1.2e-212 743.8 539 66.6
AagrBONN_evm.TU.Sc2ySwM_117.2240 Anthoceros agrestis HOM05D005363 ORTHO05D006607 1.6e-207 726.9 685 57.5
SMO347G0170 Selaginella moellendorffii HOM05D005363 ORTHO05D006607 3.4e-202 709.1 499 68.5
CDE12G0672 Ceratophyllum demersum HOM05D005363 ORTHO05D006607 5.2e-195 685.3 408 80.4
Nitab4.5_0001969g0080 Nicotiana tabacum HOM05D005363 ORTHO05D006607 8.1e-188 661.4 693 56.6
Atru.chr2.2913 Acer truncatum HOM05D005363 ORTHO05D006607 8.4e-185 651.4 345 88.1
CBR_g48040 Chara braunii HOM05D005363 ORTHO05D006607 2.0e-178 630.2 544 56.2
Zm00001eb171920 Zea mays HOM05D005363 ORTHO05D006607 4.0e-171 605.9 492 58.7
Os08g0177600 Oryza sativa ssp. japonica HOM05D005363 ORTHO05D006607 2.7e-167 593.2 469 61.0
Eucgr.F01076 Eucalyptus grandis HOM05D005363 ORTHO05D006607 6.7e-166 588.6 548 63.7
Ca_01813_v3 Cicer arietinum L. HOM05D005363 ORTHO05D006607 3.7e-164 582.8 364 78.0
Nitab4.5_0007366g0050 Nicotiana tabacum HOM05D005363 ORTHO05D006607 7.1e-160 568.5 492 65.2
Cre12.g556911 Chlamydomonas reinhardtii HOM05D005363 ORTHO05D006607 1.7e-132 477.6 499 49.5
unitig_13.g31430 Utricularia gibba HOM05D005363 ORTHO05D006607 6.3e-124 449.1 496 53.4
MCO13G379 Micromonas commoda HOM05D005363 ORTHO05D006607 1.1e-123 448.4 563 44.2
SEGI_22122 Sequoiadendron giganteum HOM05D005363 ORTHO05D006607 3.0e-118 430.3 254 76.4
PRCOL_00003292 Prasinoderma coloniale HOM05D005363 ORTHO05D006607 3.7e-108 396.7 734 37.1
Nitab4.5_0007366g0060 Nicotiana tabacum HOM05D005363 ORTHO05D006607 1.5e-101 374.8 214 84.1
Cfa025591 Carpinus fangiana HOM05D005363 ORTHO05D006607 7.5e-101 372.5 520 38.3
Atru.chr2.2912 Acer truncatum HOM05D005363 ORTHO05D006607 2.7e-98 364.0 375 60.8
PGSC0003DMG400002669 Solanum tuberosum HOM05D005363 ORTHO05D006607 1.1e-91 342.0 179 89.9
CAN.G397.4 Capsicum annuum HOM05D005363 ORTHO05D006607 7.5e-85 319.3 263 63.9
Eucgr.C01186 Eucalyptus grandis HOM05D005363 ORTHO05D006607 3.3e-72 277.3 361 54.8
MBI09_g27609_MAGBIO Magnolia biondii HOM05D005363 ORTHO05D006607 2.9e-68 264.2 153 79.1
CDE12G0057 Ceratophyllum demersum HOM05D005363 ORTHO05D006607 2.7e-58 231.1 172 66.3
CDE12G0487 Ceratophyllum demersum HOM05D005363 ORTHO05D006607 2.4e-51 208.0 310 44.8
SEGI_32923 Sequoiadendron giganteum HOM05D005363 ORTHO05D006607 3.4e-45 187.6 98 87.8
Ca_01800_v3 Cicer arietinum L. HOM05D005363 ORTHO05D006607 2.5e-35 154.8 244 45.5
Ca_30473_v3 Cicer arietinum L. HOM05D005363 ORTHO05D006607 7.2e-35 153.3 232 46.6
Cc06_g05450 Coffea canephora HOM05D005363 ORTHO05D006607 2.3e-25 121.7 229 50.7
GSVIVG01001519001 Vitis vinifera HOM05D005363 ORTHO05D006607 5.1e-25 120.6 96 65.6
SEGI_35588 Sequoiadendron giganteum HOM05D005363 ORTHO05D006607 2.6e-24 118.2 294 38.1
CDE12G0011 Ceratophyllum demersum HOM05D005363 ORTHO05D006607 3.3e-24 117.9 89 69.7
arahy.Tifrunner.gnm1.ann1.Q8WXS4 Arachis hypogaea HOM05D005363 ORTHO05D006607 2.8e-15 88.2 90 57.8
THA.LOC104811844 Tarenaya hassleriana HOM05D005363 ORTHO05D006607 7.0e-14 83.6 203 45.8
Sopen00g013530 Solanum pennellii HOM05D005363 ORTHO05D006607 7.7e-13 80.1 99 58.6
GSVIVG01002726001 Vitis vinifera HOM05D005363 ORTHO05D006607 1.2e-10 72.8 171 35.7
GSVIVG01001488001 Vitis vinifera HOM05D005363 ORTHO05D006607 4.0e-09 67.8 168 34.5
GSVIVG01001483001 Vitis vinifera HOM05D005363 ORTHO05D006607 1.3e-07 62.8 76 48.7
GSVIVG01004486001 Vitis vinifera HOM05D004774 ORTHO05D005514 1.3e-07 62.8 272 30.9
Sopen00g012230 Solanum pennellii HOM05D005363 ORTHO05D006607 2.8e-07 61.6 79 62.0


User provided reference genes

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