Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA238G1164 Erigeron canadensis HOM05D006375 ORTHO05D008188 0.0e+00 1774.2 912 100.0
HanXRQChr14g0444701 Helianthus annuus HOM05D006375 ORTHO05D008188 0.0e+00 1226.8 931 70.6
Lsat_1_v5_gn_2_69340 Lactuca sativa HOM05D006375 ORTHO05D008188 7.3e-287 990.7 942 60.7
Lj4C263T11 Lonicera japonica HOM05D006375 ORTHO05D008188 3.5e-281 971.8 977 56.9
CSS0034734 Camellia sinensis var. sinensis HOM05D006375 ORTHO05D008188 6.2e-262 907.9 885 56.7
Actinidia06495 Actinidia chinensis HOM05D006375 ORTHO05D008188 1.4e-261 906.7 1000 53.3
Hma1.2p1_0158F.1_g070200 Hydrangea macrophylla HOM05D006375 ORTHO05D008188 2.0e-260 902.9 853 57.8
Rhsim10G0177200 Rhododendron simsii HOM05D006375 ORTHO05D008188 1.4e-258 896.7 963 53.6
QL02p058134 Quercus lobata HOM05D006375 ORTHO05D008188 1.9e-258 896.3 1006 51.3
Potri.004G087400 Populus trichocarpa HOM05D006375 ORTHO05D008188 5.7e-255 884.8 995 52.5
Cfa007814 Carpinus fangiana HOM05D006375 ORTHO05D008188 9.7e-255 884.0 966 52.1
PGSC0003DMG400015671 Solanum tuberosum HOM05D006375 ORTHO05D008188 1.6e-254 883.2 958 54.0
QL93p0100_0515 Quercus lobata HOM05D006375 ORTHO05D008188 2.8e-254 882.5 1006 51.1
Ciclev10010990m.g Citrus clementina HOM05D006375 ORTHO05D008188 3.1e-253 879.0 959 53.5
Thecc.04G114800 Theobroma cacao HOM05D006375 ORTHO05D008188 6.9e-253 877.9 972 51.9
Solyc11g011150.2 Solanum lycopersicum HOM05D006375 ORTHO05D008188 1.5e-252 876.7 959 53.4
CANSAT64G0280 Cannabis sativa HOM05D006375 ORTHO05D008188 4.5e-252 875.2 965 51.4
Sabra04G0058300 Salix brachista HOM05D006375 ORTHO05D008188 4.5e-252 875.2 925 54.1
Nitab4.5_0000201g0170 Nicotiana tabacum HOM05D006375 ORTHO05D008188 1.7e-251 873.2 919 54.4
Sopen11g005910 Solanum pennellii HOM05D006375 ORTHO05D008188 2.9e-251 872.5 956 53.2
Manes.01G118300 Manihot esculenta HOM05D006375 ORTHO05D008188 9.4e-250 867.5 919 54.4
Haze_14261 Corylus avellana HOM05D006375 ORTHO05D008188 3.6e-249 865.5 1021 49.8
SGA_v2.0_scaffold2G00936 Striga asiatica HOM05D006375 ORTHO05D008188 3.9e-248 862.1 939 53.2
DCAR_003431 Daucus carota HOM05D006375 ORTHO05D008188 1.7e-246 856.7 959 52.5
SalBow3G0693 Salvia bowleyana HOM05D006375 ORTHO05D008188 2.2e-246 856.3 990 51.3
Nitab4.5_0010112g0040 Nicotiana tabacum HOM05D006375 ORTHO05D008188 3.7e-246 855.5 962 51.9
Gohir.A07G078100 Gossypium hirsutum HOM05D006375 ORTHO05D008188 8.2e-246 854.4 1005 50.4
TAR374G0480 Trochodendron aralioides HOM05D006375 ORTHO05D008188 1.8e-245 853.2 999 50.5
MSTRG.2615 Avicennia marina HOM05D006375 ORTHO05D008188 3.8e-243 845.5 967 51.1
Gohir.D07G082900 Gossypium hirsutum HOM05D006375 ORTHO05D008188 1.2e-241 840.5 1008 49.3
Gorai.001G088500 Gossypium raimondii HOM05D006375 ORTHO05D008188 1.2e-241 840.5 1005 49.8
arahy.Tifrunner.gnm1.ann1.WVM8AG Arachis hypogaea HOM05D006375 ORTHO05D008188 1.7e-238 830.1 928 51.5
LjContig00141g0022245 Lotus japonicus HOM05D006375 ORTHO05D008188 1.7e-238 830.1 941 50.7
Sc14g0006560 Simmondsia chinensis HOM05D006375 ORTHO05D008188 2.4e-237 826.2 990 49.3
arahy.Tifrunner.gnm1.ann1.EH3TRU Arachis hypogaea HOM05D006375 ORTHO05D008188 2.0e-236 823.2 930 51.6
MD17G1258300 Malus domestica HOM05D006375 ORTHO05D008188 4.5e-236 822.0 937 50.1
Atru.chr1.1908 Acer truncatum HOM05D006375 ORTHO05D008188 5.9e-236 821.6 944 51.6
Nn3g18305 Nelumbo nucifera HOM05D006375 ORTHO05D008188 2.2e-235 819.7 859 52.2
TWI53G2003 Tripterygium wilfordii HOM05D006375 ORTHO05D008188 1.5e-234 817.0 912 51.3
GSVIVG01030782001 Vitis vinifera HOM05D006375 ORTHO05D008188 1.4e-232 810.4 953 49.7
Glyma.14G214000 Glycine max HOM05D006375 ORTHO05D008188 1.8e-232 810.1 915 51.6
Lalb_Chr04g0251361 Lupinus albus HOM05D006375 ORTHO05D008188 1.8e-232 810.1 913 51.0
VMungo0647G2002 Vigna mungo HOM05D006375 ORTHO05D008188 3.7e-230 802.4 925 50.8
EL10Ac6g15274 Beta vulgaris HOM05D006375 ORTHO05D008188 4.8e-230 802.0 891 51.5
vmacro07694 Vaccinium macrocarpon HOM05D006375 ORTHO05D008188 4.8e-230 802.0 974 48.8
Medtr5g078360 Medicago truncatula HOM05D006375 ORTHO05D008188 6.3e-230 801.6 924 50.9
Migut.H02262 Erythranthe guttata HOM05D006375 ORTHO05D008188 8.2e-230 801.2 849 53.5
TPR.G8261 Trifolium pratense HOM05D006375 ORTHO05D008188 2.4e-229 799.7 934 50.6
RcHm_v2.0_Chr3g0493161 Rosa chinensis HOM05D006375 ORTHO05D008188 1.2e-228 797.3 951 48.5
PSO478G2715 Papaver somniferum HOM05D006375 ORTHO05D008188 5.9e-228 795.0 932 49.8
CsaV3_5G024160 Cucumis sativus L. HOM05D006375 ORTHO05D008188 1.5e-226 790.4 966 48.1
Hund04476 Selenicereus undatus HOM05D006375 ORTHO05D008188 1.5e-226 790.4 875 50.1
Sed0006511 Sechium edule HOM05D006375 ORTHO05D008188 7.2e-226 788.1 994 47.3
AUR62003604 Chenopodium quinoa HOM05D006375 ORTHO05D008188 1.8e-224 783.5 870 51.1
FvH4_1g28770 Fragaria vesca HOM05D006375 ORTHO05D008188 2.3e-224 783.1 962 48.4
CiPaw.03G071800 Carya illinoinensis HOM05D006375 ORTHO05D008188 4.0e-224 782.3 957 48.4
COL.COLO4_05994 Corchorus olitorius HOM05D006375 ORTHO05D008188 4.0e-224 782.3 978 48.5
Aqoxy3G00081 Aquilegia oxysepala HOM05D006375 ORTHO05D008188 6.8e-224 781.6 937 48.6
PGR004G2253 Punica granatum HOM05D006375 ORTHO05D008188 1.5e-223 780.4 918 50.0
TWI74G0084 Tripterygium wilfordii HOM05D006375 ORTHO05D008188 2.6e-223 779.6 923 50.7
AUR62017915 Chenopodium quinoa HOM05D006375 ORTHO05D008188 1.3e-222 777.3 845 52.0
PSO017G5819 Papaver somniferum HOM05D006375 ORTHO05D008188 4.8e-222 775.4 931 48.9
Cc07_g13460 Coffea canephora HOM05D006375 ORTHO05D008188 1.4e-221 773.9 924 49.4
FAN19G0463 Fragaria x ananassa HOM05D006375 ORTHO05D008188 9.1e-221 771.2 973 47.7
FAN23G0218 Fragaria x ananassa HOM05D006375 ORTHO05D008188 5.9e-220 768.5 995 46.6
Phvul.008G233100 Phaseolus vulgaris HOM05D006375 ORTHO05D008188 7.7e-220 768.1 916 50.8
AL6G27600 Arabidopsis lyrata HOM05D006375 ORTHO05D008188 1.5e-218 763.8 924 48.3
Cpa.g.sc116.55 Carica papaya HOM05D006375 ORTHO05D008188 7.2e-218 761.5 967 47.9
AT5G16630 Arabidopsis thaliana HOM05D006375 ORTHO05D008188 1.0e-216 757.7 916 48.6
Prupe.3G161000 Prunus persica HOM05D006375 ORTHO05D008188 1.8e-216 756.9 944 46.5
BcaC03g18507 Brassica carinata HOM05D006375 ORTHO05D008188 8.8e-216 754.6 923 48.3
MELO3C022863.2 Cucumis melo HOM05D006375 ORTHO05D008188 8.8e-216 754.6 941 47.1
Thhalv10012651m.g Eutrema salsugineum HOM05D006375 ORTHO05D008188 2.6e-215 753.1 923 48.6
Carub.0006s1484 Capsella rubella HOM05D006375 ORTHO05D008188 1.3e-214 750.7 906 48.0
Psat2g047400 Pisum sativum HOM05D006375 ORTHO05D008188 1.3e-214 750.7 829 50.9
CSS0009955 Camellia sinensis var. sinensis HOM05D006375 ORTHO05D008188 5.4e-213 745.3 734 55.9
THA.LOC104827188 Tarenaya hassleriana HOM05D006375 ORTHO05D008188 7.0e-213 745.0 968 46.0
Hma1.2p1_0158F.1_g070190 Hydrangea macrophylla HOM05D006375 ORTHO05D008188 1.6e-212 743.8 753 55.1
Sp6g27540 Schrenkiella parvula HOM05D006375 ORTHO05D008188 4.5e-212 742.3 936 48.1
CAN.G222.25 Capsicum annuum HOM05D006375 ORTHO05D008188 1.0e-211 741.1 889 49.6
C02p08510 Brassica napus HOM05D006375 ORTHO05D008188 1.3e-211 740.7 946 47.0
BraA02t05338Z Brassica rapa HOM05D006375 ORTHO05D008188 3.3e-210 736.1 922 47.5
Aa31LG11G13020 Aethionema arabicum HOM05D006375 ORTHO05D008188 4.3e-210 735.7 977 45.8
CARHR196570 Cardamine hirsuta HOM05D006375 ORTHO05D008188 1.2e-209 734.2 945 46.8
A02p03690 Brassica napus HOM05D006375 ORTHO05D008188 2.8e-209 733.0 922 46.7
ClCG01G008800 Citrullus lanatus HOM05D006375 ORTHO05D008188 5.7e-207 725.3 964 46.8
Ah.02g121850 Amaranthus hybridus HOM05D006375 ORTHO05D008188 9.8e-207 724.5 910 48.5
ATR0564G422 Amborella trichopoda HOM05D006375 ORTHO05D008188 9.8e-207 724.5 893 49.0
BolC2t06767H Brassica oleracea HOM05D006375 ORTHO05D000255 1.7e-203 713.8 960 45.4
Zm00001eb041880 Zea mays HOM05D006375 ORTHO05D008188 1.2e-201 707.6 863 47.6
Os08g0427500 Oryza sativa ssp. japonica HOM05D006375 ORTHO05D008188 2.0e-196 690.3 842 48.5
HPP92_024778 Vanilla planifolia HOM05D006375 ORTHO05D008188 4.3e-194 682.6 1014 44.1
CDE05G1980 Ceratophyllum demersum HOM05D006375 ORTHO05D008188 4.0e-192 676.0 880 46.0
Peaxi162Scf00305g00616 Petunia axillaris HOM05D006375 ORTHO05D008188 1.5e-191 674.1 688 54.5
unitig_899.g14571 Utricularia gibba HOM05D006375 ORTHO05D008188 3.7e-190 669.5 849 48.3
Phvul.010G024866 Phaseolus vulgaris HOM05D006375 ORTHO05D008188 3.2e-181 639.8 688 53.3
Eucgr.F02852 Eucalyptus grandis HOM05D006375 ORTHO05D008188 3.0e-171 606.7 679 50.5
SEGI_37856 Sequoiadendron giganteum HOM05D006375 ORTHO05D008188 5.6e-170 602.4 960 42.0
MBI19_g34823_MAGBIO Magnolia biondii HOM05D006375 ORTHO05D008188 9.0e-168 595.1 600 54.0
Dinv28205 Davidia involucrata HOM05D006375 ORTHO05D008188 8.7e-163 578.6 717 49.1
SHI25352 Sapria himalayana HOM05D006375 ORTHO05D008188 1.6e-161 574.3 692 49.7
Pp3c22_7360 Physcomitrium patens HOM05D006375 ORTHO05D008188 2.4e-152 543.9 1005 36.3
SMO139G0070 Selaginella moellendorffii HOM05D006375 ORTHO05D008188 5.3e-152 542.7 908 38.8
SMO157G0011 Selaginella moellendorffii HOM05D006375 ORTHO05D008188 4.9e-150 536.2 905 38.5
Mapoly0069s0010 Marchantia polymorpha HOM05D006375 ORTHO05D008188 3.7e-145 520.0 978 37.2
AagrBONN_evm.TU.Sc2ySwM_340.97 Anthoceros agrestis HOM05D006375 ORTHO05D008188 9.0e-136 488.8 856 37.0
FAN26G3226 Fragaria x ananassa HOM05D006375 ORTHO05D008188 3.0e-115 420.6 485 48.7
CBR_g3816 Chara braunii HOM05D006375 ORTHO05D008188 6.8e-107 392.9 1086 30.3
Ca_22495_v3 Cicer arietinum L. HOM05D006375 ORTHO05D008188 3.3e-93 347.4 257 66.5
Ca_22493_v3 Cicer arietinum L. HOM05D006375 ORTHO05D008188 9.6e-61 239.6 916 28.1
PRCOL_00001710 Prasinoderma coloniale HOM05D006375 ORTHO05D008188 7.8e-55 219.9 483 30.4
MCO12G035 Micromonas commoda HOM05D006375 ORTHO05D008188 2.4e-51 208.4 385 34.3
Haze_27154 Corylus avellana HOM05D006375 ORTHO05D008188 2.1e-44 185.3 375 32.0
Peaxi162Scf00305g00615 Petunia axillaris HOM05D006375 ORTHO05D008188 1.1e-43 183.0 245 46.5
Cre12.g557400 Chlamydomonas reinhardtii HOM05D006375 ORTHO05D008188 3.0e-30 138.3 321 30.5
Cfa025272 Carpinus fangiana HOM05D006375 ORTHO05D008188 9.7e-29 133.3 375 28.0
Nn2g13217 Nelumbo nucifera HOM05D006375 ORTHO05D008188 1.1e-27 129.8 136 48.5
Cfa024716 Carpinus fangiana HOM05D006375 ORTHO05D008188 3.4e-18 98.2 195 29.2
CAN.G222.26 Capsicum annuum HOM05D006375 ORTHO05D008188 5.9e-18 97.4 206 39.8
FAN26G2035 Fragaria x ananassa HOM05D006375 ORTHO05D008188 1.6e-15 89.4 174 35.6
COL.COLO4_05996 Corchorus olitorius HOM05D006375 ORTHO05D000012 1.5e-13 82.8 115 41.7
SHI25356 Sapria himalayana HOM05D006375 ORTHO05D008188 9.7e-13 80.1 85 50.6


User provided reference genes

Program Settings