Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA236G2574 Erigeron canadensis HOM05D004134 ORTHO05D005240 3.4e-145 518.5 289 100.0
HanXRQChr07g0187421 Helianthus annuus HOM05D004134 ORTHO05D005240 4.7e-78 295.4 172 83.1
Lsat_1_v5_gn_7_76380 Lactuca sativa HOM05D004134 ORTHO05D005240 1.8e-66 256.9 256 63.7
Thecc.01G149600 Theobroma cacao HOM05D004134 ORTHO05D005240 3.5e-65 252.7 163 76.1
unitig_899.g15494 Utricularia gibba HOM05D004134 ORTHO05D005240 1.0e-64 251.1 173 72.8
Dinv19398 Davidia involucrata HOM05D004134 ORTHO05D005240 2.2e-64 250.0 252 56.3
MSTRG.5116 Avicennia marina HOM05D004134 ORTHO05D005240 2.9e-64 249.6 172 71.5
PGSC0003DMG400024925 Solanum tuberosum HOM05D004134 ORTHO05D005240 8.5e-64 248.1 259 54.4
Sopen01g046140 Solanum pennellii HOM05D004134 ORTHO05D005240 1.9e-63 246.9 262 53.8
CiPaw.05G006000 Carya illinoinensis HOM05D004134 ORTHO05D005240 7.2e-63 245.0 171 71.9
Duzib147G1693 Durio zibethinus HOM05D004134 ORTHO05D005240 1.2e-62 244.2 169 72.8
Nitab4.5_0002596g0050 Nicotiana tabacum HOM05D004134 ORTHO05D005240 2.1e-62 243.4 260 53.5
Dinv07474 Davidia involucrata HOM05D004134 ORTHO05D005240 2.7e-62 243.0 191 64.9
Duzib264G0885 Durio zibethinus HOM05D004134 ORTHO05D005240 2.7e-62 243.0 159 76.1
Hma1.2p1_0427F.1_g150710 Hydrangea macrophylla HOM05D004134 ORTHO05D005240 2.7e-62 243.0 135 84.4
Gohir.A12G002500 Gossypium hirsutum HOM05D004134 ORTHO05D005240 4.7e-62 242.3 173 69.9
Gohir.D12G002200 Gossypium hirsutum HOM05D004134 ORTHO05D005240 4.7e-62 242.3 173 69.9
GSVIVG01004116001 Vitis vinifera HOM05D004134 ORTHO05D005240 4.7e-62 242.3 184 66.3
Haze_10069 Corylus avellana HOM05D004134 ORTHO05D005240 8.0e-62 241.5 171 71.3
CAN.G798.51 Capsicum annuum HOM05D004134 ORTHO05D005240 1.4e-61 240.7 151 75.5
SGA_v2.0_scaffold272G46372 Striga asiatica HOM05D004134 ORTHO05D005240 1.4e-61 240.7 181 68.5
Gorai.008G001600 Gossypium raimondii HOM05D004134 ORTHO05D005240 1.8e-61 240.4 173 69.4
Peaxi162Scf00011g00938 Petunia axillaris HOM05D004134 ORTHO05D005240 2.3e-61 240.0 179 68.2
Haze_10066 Corylus avellana HOM05D004134 ORTHO05D005240 4.0e-61 239.2 179 69.3
SGA_v2.0_scaffold304G47905 Striga asiatica HOM05D004134 ORTHO05D005240 5.2e-61 238.8 148 76.4
Migut.B00788 Erythranthe guttata HOM05D004134 ORTHO05D005240 6.8e-61 238.4 267 54.7
Lju50A15T20 Lonicera japonica HOM05D004134 ORTHO05D005240 8.8e-61 238.0 174 66.7
Nitab4.5_0000948g0120 Nicotiana tabacum HOM05D004134 ORTHO05D005240 1.2e-60 237.7 271 50.9
SalBow1G3184 Salvia bowleyana HOM05D004134 ORTHO05D005240 2.6e-60 236.5 150 72.0
Aa31LG3G10940 Aethionema arabicum HOM05D004134 ORTHO05D005240 7.5e-60 235.0 153 72.5
BcaC02g12241 Brassica carinata HOM05D004134 ORTHO05D005240 7.5e-60 235.0 140 76.4
C04p06100 Brassica napus HOM05D004134 ORTHO05D005240 7.5e-60 235.0 140 76.4
BolC4t22236H Brassica oleracea HOM05D004134 ORTHO05D005240 7.5e-60 235.0 140 76.4
SalBow8G3818 Salvia bowleyana HOM05D004134 ORTHO05D005240 2.2e-59 233.4 150 71.3
C03p29850 Brassica napus HOM05D004134 ORTHO05D005240 2.8e-59 233.0 142 74.6
BolC3t15332H Brassica oleracea HOM05D004134 ORTHO05D005240 2.8e-59 233.0 142 74.6
BcaC01g05160 Brassica carinata HOM05D004134 ORTHO05D005240 1.1e-58 231.1 142 73.9
Rhsim10G0097200 Rhododendron simsii HOM05D004134 ORTHO05D005240 1.1e-58 231.1 168 65.5
RhsimUnG0241700 Rhododendron simsii HOM05D004134 ORTHO05D005240 1.1e-58 231.1 168 65.5
Sc12g0003380 Simmondsia chinensis HOM05D004134 ORTHO05D005240 1.1e-58 231.1 166 66.9
CARHR135440 Cardamine hirsuta HOM05D004134 ORTHO05D005240 1.4e-58 230.7 272 48.5
Potri.003G009600 Populus trichocarpa HOM05D004134 ORTHO05D005240 4.1e-58 229.2 168 66.7
QL02p100166 Quercus lobata HOM05D004134 ORTHO05D005240 4.1e-58 229.2 216 58.3
SalBow8G2435 Salvia bowleyana HOM05D004134 ORTHO05D005240 4.1e-58 229.2 150 70.0
THA.LOC104801417 Tarenaya hassleriana HOM05D004134 ORTHO05D005240 5.3e-58 228.8 154 71.4
Nn1g06242 Nelumbo nucifera HOM05D004134 ORTHO05D005240 7.0e-58 228.4 175 65.1
Thhalv10001320m.g Eutrema salsugineum HOM05D004134 ORTHO05D005240 1.6e-57 227.3 251 51.0
RcHm_v2.0_Chr7g0209131 Rosa chinensis HOM05D004134 ORTHO05D005240 2.7e-57 226.5 167 69.5
Cpa.g.sc612.1 Carica papaya HOM05D004134 ORTHO05D005240 3.5e-57 226.1 156 68.6
Lj8C283T12 Lonicera japonica HOM05D004134 ORTHO05D005240 4.5e-57 225.7 128 78.1
Oeu034147.1 Olea europaea HOM05D004134 ORTHO05D005240 4.5e-57 225.7 142 74.6
RcHm_v2.0_Chr7g0241541 Rosa chinensis HOM05D004134 ORTHO05D005240 5.9e-57 225.3 176 66.5
A03p25010 Brassica napus HOM05D004134 ORTHO05D005240 7.7e-57 224.9 272 49.3
Lj8C281T2 Lonicera japonica HOM05D004134 ORTHO05D005240 1.0e-56 224.6 128 77.3
Prupe.7G053600 Prunus persica HOM05D004134 ORTHO05D005240 1.0e-56 224.6 171 64.3
BcaB02g08952 Brassica carinata HOM05D004134 ORTHO05D005240 1.3e-56 224.2 132 76.5
Atru.chr6.762 Acer truncatum HOM05D004134 ORTHO05D005240 1.7e-56 223.8 137 75.9
COL.COLO4_33567 Corchorus olitorius HOM05D004134 ORTHO05D005240 1.7e-56 223.8 200 60.5
BraA03t11704Z Brassica rapa HOM05D004134 ORTHO05D005240 2.2e-56 223.4 272 48.9
Sed0024495 Sechium edule HOM05D004134 ORTHO05D005240 3.8e-56 222.6 171 64.9
PGR042G0619 Punica granatum HOM05D004134 ORTHO05D005240 5.0e-56 222.2 178 64.0
arahy.Tifrunner.gnm1.ann1.FJZE1E Arachis hypogaea HOM05D004134 ORTHO05D005240 6.5e-56 221.9 154 67.5
arahy.Tifrunner.gnm1.ann1.PV76CP Arachis hypogaea HOM05D004134 ORTHO05D005240 6.5e-56 221.9 154 67.5
CANSAT54G0881 Cannabis sativa HOM05D004134 ORTHO05D005240 6.5e-56 221.9 241 52.3
RcHm_v2.0_Chr7g0241521 Rosa chinensis HOM05D004134 ORTHO05D005240 1.1e-55 221.1 177 65.5
A05p05210 Brassica napus HOM05D004134 ORTHO05D005240 1.5e-55 220.7 129 76.0
FvH4_5g21650 Fragaria vesca HOM05D004134 ORTHO05D005240 1.5e-55 220.7 235 54.0
Actinidia26163 Actinidia chinensis HOM05D004134 ORTHO05D005240 1.9e-55 220.3 167 64.7
ClCG08G001520 Citrullus lanatus HOM05D004134 ORTHO05D005240 2.5e-55 219.9 171 63.7
BraA05t19492Z Brassica rapa HOM05D004134 ORTHO05D005240 5.5e-55 218.8 128 75.8
FAN18G3216 Fragaria x ananassa HOM05D004134 ORTHO05D005240 7.2e-55 218.4 235 54.5
TWI23G0224 Tripterygium wilfordii HOM05D004134 ORTHO05D005240 9.4e-55 218.0 154 68.8
VMungo0540G2254 Vigna mungo HOM05D004134 ORTHO05D005240 9.4e-55 218.0 135 73.3
BcaB01g03295 Brassica carinata HOM05D004134 ORTHO05D005240 2.7e-54 216.5 127 74.8
SalBow8G0286 Salvia bowleyana HOM05D004134 ORTHO05D005240 2.7e-54 216.5 150 68.7
Carub.0004s2260 Capsella rubella HOM05D004134 ORTHO05D005240 3.6e-54 216.1 253 49.0
Cfa014311 Carpinus fangiana HOM05D004134 ORTHO05D001258 3.6e-54 216.1 127 76.4
MELO3C022134.2 Cucumis melo HOM05D004134 ORTHO05D005240 3.6e-54 216.1 253 49.4
FAN04G2346 Fragaria x ananassa HOM05D004134 ORTHO05D005240 3.6e-54 216.1 235 54.0
Lj6g0001374 Lotus japonicus HOM05D004134 ORTHO05D005240 4.7e-54 215.7 136 71.3
TPR.G2118 Trifolium pratense HOM05D004134 ORTHO05D005240 8.0e-54 214.9 171 62.6
AUR62003266 Chenopodium quinoa HOM05D004134 ORTHO05D005240 1.0e-53 214.5 145 70.3
MD10G1070100 Malus domestica HOM05D004134 ORTHO05D005240 1.4e-53 214.2 188 57.4
AL4G38180 Arabidopsis lyrata HOM05D004134 ORTHO05D005240 1.8e-53 213.8 251 50.6
Sp4g27170 Schrenkiella parvula HOM05D004134 ORTHO05D005240 2.3e-53 213.4 262 53.8
Glyma.16G003700 Glycine max HOM05D004134 ORTHO05D005240 3.0e-53 213.0 179 62.0
Ciclev10000416m.g Citrus clementina HOM05D004134 ORTHO05D005240 5.2e-53 212.2 130 75.4
CSS0009525 Camellia sinensis var. sinensis HOM05D004134 ORTHO05D005240 6.8e-53 211.8 272 48.2
MD05G1062400 Malus domestica HOM05D004134 ORTHO05D005240 8.8e-53 211.5 129 74.4
Eucgr.G00349 Eucalyptus grandis HOM05D004134 ORTHO05D005240 2.0e-52 210.3 128 76.6
Psat0s1535g0080 Pisum sativum HOM05D004134 ORTHO05D005240 2.0e-52 210.3 154 65.6
Hund16551 Selenicereus undatus HOM05D004134 ORTHO05D005240 2.6e-52 209.9 149 65.8
TAR381G1335 Trochodendron aralioides HOM05D004134 ORTHO05D005240 2.6e-52 209.9 183 60.1
CsaV3_5G039580 Cucumis sativus L. HOM05D004134 ORTHO05D005240 4.4e-52 209.1 253 48.6
CSS0031590 Camellia sinensis var. sinensis HOM05D004134 ORTHO05D005240 7.5e-52 208.4 265 48.3
Medtr2g006020 Medicago truncatula HOM05D004134 ORTHO05D005240 7.5e-52 208.4 156 64.1
DCAR_001836 Daucus carota HOM05D004134 ORTHO05D005240 1.7e-51 207.2 123 74.8
SMO361G0066 Selaginella moellendorffii HOM05D004134 ORTHO05D005240 1.7e-51 207.2 145 64.8
AUR62027202 Chenopodium quinoa HOM05D004134 ORTHO05D005240 3.7e-51 206.1 237 50.6
Glyma.12G167800 Glycine max HOM05D004134 ORTHO05D005240 3.7e-51 206.1 227 60.8
vmacro19872 Vaccinium macrocarpon HOM05D004134 ORTHO05D005240 3.7e-51 206.1 199 55.3
FAN13G2390 Fragaria x ananassa HOM05D004134 ORTHO05D005240 4.8e-51 205.7 247 51.4
Ca_00047_v3 Cicer arietinum L. HOM05D004134 ORTHO05D005240 6.3e-51 205.3 132 68.9
Lalb_Chr21g0308281 Lupinus albus HOM05D004134 ORTHO05D005240 6.3e-51 205.3 258 54.3
Manes.02G223500 Manihot esculenta HOM05D004134 ORTHO05D005240 8.3e-51 204.9 129 72.9
ATR0681G288 Amborella trichopoda HOM05D004134 ORTHO05D005240 5.4e-50 202.2 127 70.1
Zm00001eb131370 Zea mays HOM05D004134 ORTHO05D005240 7.0e-50 201.8 172 57.6
AT2G40360 Arabidopsis thaliana HOM05D004134 ORTHO05D005240 1.6e-49 200.7 249 50.6
Aqoxy6G03049 Aquilegia oxysepala HOM05D004134 ORTHO05D005240 4.5e-49 199.1 137 67.2
Phvul.006G218200 Phaseolus vulgaris HOM05D004134 ORTHO05D005240 5.9e-49 198.7 254 47.6
EL10Ac6g14818 Beta vulgaris HOM05D004134 ORTHO05D005240 7.7e-49 198.4 134 66.4
Ah.09g229700 Amaranthus hybridus HOM05D004134 ORTHO05D005240 5.0e-48 195.7 165 60.0
CBR_g19000 Chara braunii HOM05D004134 ORTHO05D005240 6.6e-48 195.3 156 60.9
AagrBONN_evm.TU.Sc2ySwM_344.2863 Anthoceros agrestis HOM05D004134 ORTHO05D005240 1.1e-47 194.5 155 61.3
ATR0598G150 Amborella trichopoda HOM05D004134 ORTHO05D005240 1.5e-47 194.1 127 68.5
Cc07_g19170 Coffea canephora HOM05D004134 ORTHO05D005240 2.5e-47 193.4 132 66.7
MBI13_g20493_MAGBIO Magnolia biondii HOM05D004134 ORTHO05D005240 2.5e-47 193.4 211 48.8
SMO004G0015 Selaginella moellendorffii HOM05D004134 ORTHO05D005240 2.8e-46 189.9 132 62.9
Mapoly0025s0073 Marchantia polymorpha HOM05D004134 ORTHO05D005240 3.6e-46 189.5 154 58.4
Pp3c18_14790 Physcomitrium patens HOM05D004134 ORTHO05D005240 6.1e-46 188.7 171 56.1
AL3G45050 Arabidopsis lyrata HOM05D004134 ORTHO05D005240 1.7e-43 180.6 178 55.6
PSO063G3695 Papaver somniferum HOM05D004134 ORTHO05D005240 1.9e-39 167.2 183 53.0
Sabra03G0005000 Salix brachista HOM05D004134 ORTHO05D005240 4.4e-36 156.0 137 60.6
PSO384G1237 Papaver somniferum HOM05D004134 ORTHO05D005240 7.5e-36 155.2 131 59.5
PSO339G3543 Papaver somniferum HOM05D004134 ORTHO05D005240 3.7e-35 152.9 131 58.8
PRCOL_00006650 Prasinoderma coloniale HOM05D004134 ORTHO05D005240 3.5e-33 146.4 148 49.3
Prupe.6G114000 Prunus persica HOM05D004134 ORTHO05D005240 6.0e-33 145.6 154 50.6
TAR087G0001 Trochodendron aralioides HOM05D004134 ORTHO05D005240 5.6e-31 139.0 105 65.7
Solyc01g103720.4 Solanum lycopersicum HOM05D004134 ORTHO05D005240 6.2e-30 135.6 75 78.7
Cre10.g417950 Chlamydomonas reinhardtii HOM05D004134 ORTHO05D005240 8.0e-30 135.2 177 43.5
Sabra01G0168600 Salix brachista HOM05D004134 ORTHO05D005240 9.8e-28 128.3 182 42.3
Haze_26888 Corylus avellana HOM05D004134 ORTHO05D005240 1.1e-23 114.8 132 40.2
Cfa026475 Carpinus fangiana HOM05D004134 ORTHO05D005240 1.4e-21 107.8 165 38.2
MCO01G460 Micromonas commoda HOM05D004134 ORTHO05D005240 5.2e-21 105.9 130 40.0
Potri.004G222500 Populus trichocarpa HOM05D004134 ORTHO05D005240 1.7e-19 100.9 51 78.4
CARHR115520 Cardamine hirsuta HOM05D004134 ORTHO05D005240 4.1e-18 96.3 63 71.4
HPP92_014183 Vanilla planifolia HOM05D004134 ORTHO05D005240 8.1e-14 82.0 122 41.8
Haze_12759 Corylus avellana HOM05D004134 ORTHO05D005240 1.2e-12 78.2 43 74.4


User provided reference genes

Program Settings