Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA234G0414 Erigeron canadensis HOM05D006964 ORTHO05D008861 3.0e-304 1047.7 550 100.0
Lsat_1_v5_gn_1_40040 Lactuca sativa HOM05D006964 ORTHO05D008861 1.2e-199 700.3 556 69.1
HanXRQChr11g0342451 Helianthus annuus HOM05D006964 ORTHO05D008861 8.9e-195 684.1 572 66.8
CAN.G843.21 Capsicum annuum HOM05D006964 ORTHO05D008861 2.3e-182 642.9 586 58.7
Medtr5g098850 Medicago truncatula HOM05D006964 ORTHO05D008861 1.2e-180 637.1 552 61.1
Nitab4.5_0000660g0010 Nicotiana tabacum HOM05D006964 ORTHO05D008861 1.2e-180 637.1 573 60.0
arahy.Tifrunner.gnm1.ann1.EIVX2Z Arachis hypogaea HOM05D006964 ORTHO05D008861 1.1e-179 634.0 571 63.6
Lalb_Chr10g0101591 Lupinus albus HOM05D006964 ORTHO05D008861 1.1e-179 634.0 543 62.6
PGSC0003DMG400014180 Solanum tuberosum HOM05D006964 ORTHO05D008861 1.1e-179 634.0 587 61.0
Solyc03g118320.1 Solanum lycopersicum HOM05D006964 ORTHO05D008861 8.9e-179 630.9 585 59.0
ClCG07G011010 Citrullus lanatus HOM05D006964 ORTHO05D008861 2.6e-178 629.4 559 61.9
arahy.Tifrunner.gnm1.ann1.3RSR9Y Arachis hypogaea HOM05D006964 ORTHO05D008861 4.4e-178 628.6 576 60.4
Nitab4.5_0000663g0200 Nicotiana tabacum HOM05D006964 ORTHO05D008861 7.5e-178 627.9 603 56.6
Thhalv10009719m.g Eutrema salsugineum HOM05D006964 ORTHO05D008861 9.8e-178 627.5 547 62.2
Sopen03g037220 Solanum pennellii HOM05D006964 ORTHO05D008861 1.3e-177 627.1 585 58.5
Ca_06492_v3 Cicer arietinum L. HOM05D006964 ORTHO05D008861 1.7e-177 626.7 571 63.0
BraA07t28989Z Brassica rapa HOM05D006964 ORTHO05D008861 8.3e-177 624.4 547 62.5
A07p12030 Brassica napus HOM05D006964 ORTHO05D008861 1.1e-176 624.0 547 62.3
AT1G24290 Arabidopsis thaliana HOM05D006964 ORTHO05D008861 1.9e-176 623.2 547 61.2
Lj1A623T74 Lonicera japonica HOM05D006964 ORTHO05D008861 1.9e-176 623.2 574 60.8
Nitab4.5_0004302g0010 Nicotiana tabacum HOM05D006964 ORTHO05D008861 2.4e-176 622.9 573 58.6
Sp1g23470 Schrenkiella parvula HOM05D006964 ORTHO05D008861 4.1e-176 622.1 551 61.3
Sed0000140 Sechium edule HOM05D006964 ORTHO05D008861 4.1e-176 622.1 556 62.2
Cfa016256 Carpinus fangiana HOM05D006964 ORTHO05D008861 7.0e-176 621.3 547 62.2
PGR031G2089 Punica granatum HOM05D006964 ORTHO05D008861 7.0e-176 621.3 572 59.4
Potri.011G023800 Populus trichocarpa HOM05D006964 ORTHO05D008861 3.5e-175 619.0 562 62.5
CARHR026810 Cardamine hirsuta HOM05D006964 ORTHO05D008861 6.0e-175 618.2 547 63.6
Glyma.14G003100 Glycine max HOM05D006964 ORTHO05D008861 6.0e-175 618.2 548 63.9
Carub.0001s2577 Capsella rubella HOM05D006964 ORTHO05D008861 1.0e-174 617.5 541 61.2
Oeu061991.1 Olea europaea HOM05D006964 ORTHO05D008861 1.7e-174 616.7 549 61.2
Rhsim02G0171800 Rhododendron simsii HOM05D006964 ORTHO05D008861 1.7e-174 616.7 588 59.2
THA.LOC104827506 Tarenaya hassleriana HOM05D006964 ORTHO05D008861 1.7e-174 616.7 555 62.7
BcaC06g35275 Brassica carinata HOM05D006964 ORTHO05D008861 3.0e-174 615.9 551 61.7
BolC7t42303H Brassica oleracea HOM05D006964 ORTHO05D008861 3.0e-174 615.9 551 61.7
COL.COLO4_20003 Corchorus olitorius HOM05D006964 ORTHO05D008861 3.0e-174 615.9 569 60.5
Atru.chr8.1035 Acer truncatum HOM05D006964 ORTHO05D008861 5.0e-174 615.1 567 59.4
AL1G40630 Arabidopsis lyrata HOM05D006964 ORTHO05D008861 5.0e-174 615.1 547 62.9
C07p17970 Brassica napus HOM05D006964 ORTHO05D008861 1.5e-173 613.6 553 61.5
MBI18_g18636_MAGBIO Magnolia biondii HOM05D006964 ORTHO05D008861 1.5e-173 613.6 538 62.1
Aqoxy7G03560 Aquilegia oxysepala HOM05D006964 ORTHO05D008861 1.9e-173 613.2 582 59.8
Aa31LG7G9960 Aethionema arabicum HOM05D006964 ORTHO05D008861 2.5e-173 612.8 541 62.1
Dinv35124 Davidia involucrata HOM05D006964 ORTHO05D008861 2.5e-173 612.8 566 60.4
LjContig00081g0000792 Lotus japonicus HOM05D006964 ORTHO05D008861 3.3e-173 612.5 577 62.4
Sabra11G0014800 Salix brachista HOM05D006964 ORTHO05D008861 4.3e-173 612.1 560 63.4
Ciclev10011398m.g Citrus clementina HOM05D006964 ORTHO05D008861 9.5e-173 610.9 565 60.9
Nn7g38387 Nelumbo nucifera HOM05D006964 ORTHO05D008861 4.7e-172 608.6 584 58.2
vmacro11021 Vaccinium macrocarpon HOM05D006964 ORTHO05D008861 4.7e-172 608.6 446 70.4
Gorai.004G062600 Gossypium raimondii HOM05D006964 ORTHO05D008861 6.2e-172 608.2 563 59.9
Gohir.D08G060500 Gossypium hirsutum HOM05D006964 ORTHO05D008861 1.1e-171 607.4 563 59.9
BcaB03g13997 Brassica carinata HOM05D006964 ORTHO05D008861 1.4e-171 607.1 549 61.6
Haze_00006 Corylus avellana HOM05D006964 ORTHO05D008861 1.4e-171 607.1 552 62.1
TPR.G35899 Trifolium pratense HOM05D006964 ORTHO05D008861 1.8e-171 606.7 560 62.3
Gohir.A08G050700 Gossypium hirsutum HOM05D006964 ORTHO05D008861 2.3e-171 606.3 569 59.6
Psat2g001680 Pisum sativum HOM05D006964 ORTHO05D008861 3.1e-171 605.9 458 67.7
Eucgr.A00951 Eucalyptus grandis HOM05D006964 ORTHO05D008861 1.2e-170 604.0 589 58.6
QL04p064712 Quercus lobata HOM05D006964 ORTHO05D008861 2.6e-170 602.8 589 59.3
CiPaw.05G264600 Carya illinoinensis HOM05D006964 ORTHO05D008861 3.4e-170 602.4 564 60.5
Peaxi162Scf00314g00515 Petunia axillaris HOM05D006964 ORTHO05D008861 4.4e-170 602.1 558 57.9
QL04p064780 Quercus lobata HOM05D006964 ORTHO05D008861 4.4e-170 602.1 589 59.3
Manes.16G000700 Manihot esculenta HOM05D006964 ORTHO05D008861 5.8e-170 601.7 556 59.5
TAR464G0001 Trochodendron aralioides HOM05D006964 ORTHO05D008861 5.8e-170 601.7 579 58.0
Phvul.008G290000 Phaseolus vulgaris HOM05D006964 ORTHO05D008861 7.5e-170 601.3 559 61.5
Hma1.2p1_0391F.1_g142860 Hydrangea macrophylla HOM05D006964 ORTHO05D008861 9.9e-170 600.9 587 58.3
Thecc.01G176000 Theobroma cacao HOM05D006964 ORTHO05D008861 9.9e-170 600.9 574 59.4
Cpa.g.sc332.3 Carica papaya HOM05D006964 ORTHO05D008861 1.4e-168 597.0 550 59.3
unitig_699.g19570 Utricularia gibba HOM05D006964 ORTHO05D008861 5.4e-168 595.1 542 58.5
CsaV3_4G007230 Cucumis sativus L. HOM05D006964 ORTHO05D008861 9.2e-168 594.3 442 69.0
MD03G1299000 Malus domestica HOM05D006964 ORTHO05D008861 1.2e-167 594.0 577 56.7
SGA_v2.0_scaffold73G24408 Striga asiatica HOM05D006964 ORTHO05D008861 1.2e-167 594.0 565 61.1
SHI28197 Sapria himalayana HOM05D006964 ORTHO05D008861 1.6e-167 593.6 561 57.8
Cc11_g00270 Coffea canephora HOM05D006964 ORTHO05D008861 4.6e-167 592.0 445 67.0
Lj1C622G7 Lonicera japonica HOM05D006964 ORTHO05D008861 4.6e-167 592.0 445 69.2
CDE02G0076 Ceratophyllum demersum HOM05D006964 ORTHO05D008861 5.1e-166 588.6 535 60.7
FAN18G1087 Fragaria x ananassa HOM05D006964 ORTHO05D008861 1.1e-165 587.4 545 61.5
RcHm_v2.0_Chr7g0233321 Rosa chinensis HOM05D006964 ORTHO05D008861 2.5e-165 586.3 552 58.9
GSVIVG01015905001 Vitis vinifera HOM05D006964 ORTHO05D008861 7.3e-165 584.7 430 71.9
FAN08G0714 Fragaria x ananassa HOM05D006964 ORTHO05D008861 2.8e-164 582.8 545 60.7
EL10Ac6g15329 Beta vulgaris HOM05D006964 ORTHO05D008861 6.8e-163 578.2 547 58.9
Sc07g0001890 Simmondsia chinensis HOM05D006964 ORTHO05D008861 6.8e-163 578.2 576 58.3
FvH4_5g33930 Fragaria vesca HOM05D006964 ORTHO05D008861 8.9e-163 577.8 560 59.6
Nitab4.5_0002450g0010 Nicotiana tabacum HOM05D006964 ORTHO05D008861 1.7e-161 573.5 594 55.1
AUR62017863 Chenopodium quinoa HOM05D006964 ORTHO05D008861 1.1e-160 570.9 545 57.8
Ah.02g121270 Amaranthus hybridus HOM05D006964 ORTHO05D008861 7.8e-159 564.7 560 55.7
DCAR_005902 Daucus carota HOM05D006964 ORTHO05D008861 3.0e-158 562.8 552 57.1
ATR0763G192 Amborella trichopoda HOM05D006964 ORTHO05D008861 9.9e-154 547.7 601 52.4
AUR62003549 Chenopodium quinoa HOM05D006964 ORTHO05D008861 2.6e-146 523.1 543 57.1
Actinidia35156 Actinidia chinensis HOM05D006964 ORTHO05D008861 6.4e-145 518.5 435 62.3
HPP92_016414 Vanilla planifolia HOM05D006964 ORTHO05D008861 3.9e-142 509.2 529 52.9
SEGI_30607 Sequoiadendron giganteum HOM05D006964 ORTHO05D008861 8.7e-142 508.1 534 53.2
SMO116G0181 Selaginella moellendorffii HOM05D006964 ORTHO05D008861 1.3e-137 494.2 429 58.7
Mapoly0100s0005 Marchantia polymorpha HOM05D006964 ORTHO05D008861 1.6e-127 460.7 576 46.5
HPP92_016337 Vanilla planifolia HOM05D006964 ORTHO05D008861 2.3e-118 430.3 475 51.4
Pp3c24_11680 Physcomitrium patens HOM05D006964 ORTHO05D008861 3.3e-117 426.4 585 43.6
Pp3c23_21270 Physcomitrium patens HOM05D006964 ORTHO05D008861 4.4e-109 399.4 573 42.1
Cfa024934 Carpinus fangiana HOM05D006964 ORTHO05D008861 9.4e-88 328.6 446 43.9
Nitab4.5_0000843g0040 Nicotiana tabacum HOM05D006964 ORTHO05D008861 1.5e-85 321.2 247 64.4
Haze_26752 Corylus avellana HOM05D006964 ORTHO05D008861 3.7e-84 316.6 425 43.8
PSO677G0001 Papaver somniferum HOM05D006964 ORTHO05D008861 4.8e-84 316.2 239 68.2
Ca_28576_v3 Cicer arietinum L. HOM05D006964 ORTHO05D008861 7.2e-80 302.4 429 41.7
SalBow7G3142 Salvia bowleyana HOM05D006964 ORTHO05D008861 1.8e-70 271.2 345 49.6
SalBow7G2824 Salvia bowleyana HOM05D006964 ORTHO05D008861 6.6e-65 252.7 155 77.4
ECA238G2964 Erigeron canadensis HOM05D005083 ORTHO05D006310 1.6e-50 204.9 207 61.4
Eucgr.F00067 Eucalyptus grandis HOM05D006964 ORTHO05D008861 1.2e-42 178.7 146 64.4
Nn1g06845 Nelumbo nucifera HOM05D006964 ORTHO05D008861 3.0e-41 174.1 128 66.4
Migut.M00128 Erythranthe guttata HOM05D006964 ORTHO05D008861 8.7e-41 172.6 248 46.0
Actinidia18866 Actinidia chinensis HOM05D006964 ORTHO05D008861 4.8e-39 166.8 250 42.8
PGSC0003DMG400021041 Solanum tuberosum HOM05D006964 ORTHO05D008861 3.2e-27 127.5 78 75.6
Medtr6g036640 Medicago truncatula HOM05D006964 ORTHO05D008861 1.1e-24 119.0 114 59.6
Pp3c7_25960 Physcomitrium patens HOM05D006964 ORTHO05D008861 6.5e-20 103.2 108 50.0
MD11G1318300 Malus domestica HOM05D006964 ORTHO05D008861 4.6e-18 97.1 64 68.8
SEGI_03426 Sequoiadendron giganteum HOM05D006964 ORTHO05D008861 1.2e-10 72.4 100 44.0
Aa31LG4G7480 Aethionema arabicum HOM05D001470 ORTHO05D006756 1.0e-09 69.3 217 28.6
Carub.0002s2436 Capsella rubella HOM05D001470 ORTHO05D006756 1.8e-09 68.6 217 28.1
CARHR070990 Cardamine hirsuta HOM05D001470 ORTHO05D006756 5.1e-09 67.0 217 28.1
AL2G37670 Arabidopsis lyrata HOM05D001470 ORTHO05D006756 1.1e-08 65.9 217 28.1
Thhalv10018756m.g Eutrema salsugineum HOM05D001470 ORTHO05D006756 1.1e-08 65.9 217 27.2
Sp5g32630 Schrenkiella parvula HOM05D001470 ORTHO05D006756 1.1e-08 65.9 217 27.2
BcaB02g07107 Brassica carinata HOM05D001470 ORTHO05D006756 1.5e-08 65.5 217 27.2
BcaC08g45476 Brassica carinata HOM05D001470 ORTHO05D006756 1.5e-08 65.5 217 27.2
A07p27990 Brassica napus HOM05D001470 ORTHO05D006756 1.5e-08 65.5 217 27.2
C06p31240 Brassica napus HOM05D001470 ORTHO05D006756 1.5e-08 65.5 217 27.2
BolC6t38263H Brassica oleracea HOM05D001470 ORTHO05D006756 1.5e-08 65.5 217 27.2
BraA02t07148Z Brassica rapa HOM05D001470 ORTHO05D006756 1.5e-08 65.5 217 27.2
BraA07t30444Z Brassica rapa HOM05D001470 ORTHO05D006756 1.5e-08 65.5 217 27.2
C02p34610 Brassica napus HOM05D001470 ORTHO05D006756 1.9e-08 65.1 217 27.6
CBR_g61476 Chara braunii HOM05D001470 ORTHO05D006756 1.9e-08 65.1 220 26.8
BcaB05g25051 Brassica carinata HOM05D001470 ORTHO05D006756 4.3e-08 63.9 217 26.7
A02p21300 Brassica napus HOM05D001470 ORTHO05D006756 4.3e-08 63.9 217 26.7
Aqoxy1G02492 Aquilegia oxysepala HOM05D006964 ORTHO05D008861 7.4e-08 63.2 72 47.2
PRCOL_00005755 Prasinoderma coloniale HOM05D001470 ORTHO05D006430 9.7e-08 62.8 233 26.2
CBR_g49986 Chara braunii HOM05D001470 ORTHO05D006430 1.6e-07 62.0 226 23.5
Lj1g0008455 Lotus japonicus HOM05D001470 ORTHO05D006756 1.6e-07 62.0 218 26.6
AT1G77470 Arabidopsis thaliana HOM05D001470 ORTHO05D006756 2.2e-07 61.6 217 27.2
PSO447G0240 Papaver somniferum HOM05D001195 ORTHO05D001138 2.8e-07 61.2 292 22.9
THA.LOC104800207 Tarenaya hassleriana HOM05D001470 ORTHO05D006756 3.7e-07 60.8 244 24.6
DCAR_026835 Daucus carota HOM05D001470 ORTHO05D006756 6.3e-07 60.1 228 25.0
AagrBONN_evm.TU.Sc2ySwM_344.153 Anthoceros agrestis HOM05D001470 ORTHO05D006756 1.1e-06 59.3 220 24.1
CANSAT25G1662 Cannabis sativa HOM05D001470 ORTHO05D006756 1.1e-06 59.3 235 23.8
Gohir.A05G236800 Gossypium hirsutum HOM05D001470 ORTHO05D006756 1.1e-06 59.3 240 25.4
Mapoly0024s0100 Marchantia polymorpha HOM05D001470 ORTHO05D006756 1.1e-06 59.3 218 25.2
Atru.chr13.1511 Acer truncatum HOM05D001470 ORTHO05D006756 1.4e-06 58.9 223 25.1
PSO210G3331 Papaver somniferum HOM05D001195 ORTHO05D001138 1.4e-06 58.9 292 23.3
arahy.Tifrunner.gnm1.ann1.0P0L33 Arachis hypogaea HOM05D001470 ORTHO05D006756 2.4e-06 58.2 221 24.0
Psat5g086560 Pisum sativum HOM05D001470 ORTHO05D006756 2.4e-06 58.2 215 26.0
AagrBONN_evm.TU.Sc2ySwM_344.1249 Anthoceros agrestis HOM05D001470 ORTHO05D006430 3.1e-06 57.8 229 22.7
MSTRG.25372 Avicennia marina HOM05D001470 ORTHO05D006756 3.1e-06 57.8 218 24.8
Phvul.009G126000 Phaseolus vulgaris HOM05D001470 ORTHO05D006756 3.1e-06 57.8 218 24.8
arahy.Tifrunner.gnm1.ann1.D58UPY Arachis hypogaea HOM05D001470 ORTHO05D006756 4.1e-06 57.4 221 24.9
ECA246G2621 Erigeron canadensis HOM05D001470 ORTHO05D006756 4.1e-06 57.4 228 23.7
Solyc06g060150.3 Solanum lycopersicum HOM05D001470 ORTHO05D006756 4.1e-06 57.4 218 26.6
Thecc.08G128800 Theobroma cacao HOM05D001470 ORTHO05D006756 4.1e-06 57.4 230 24.8
Cre06.g251800 Chlamydomonas reinhardtii HOM05D001470 ORTHO05D006430 5.3e-06 57.0 226 24.3
Lj4A633G16 Lonicera japonica HOM05D001470 ORTHO05D006756 5.3e-06 57.0 223 25.1
Manes.18G079501 Manihot esculenta HOM05D001470 ORTHO05D006756 5.3e-06 57.0 226 24.3
Sopen06g020270 Solanum pennellii HOM05D001470 ORTHO05D006756 5.3e-06 57.0 218 26.6
Pp3c3_37360 Physcomitrium patens HOM05D001470 ORTHO05D006430 6.9e-06 56.6 229 25.3
Potri.002G081200 Populus trichocarpa HOM05D001470 ORTHO05D006756 6.9e-06 56.6 218 24.8
Hund17307 Selenicereus undatus HOM05D001470 ORTHO05D006756 9.0e-06 56.2 230 23.0
Sc07g0004500 Simmondsia chinensis HOM05D001470 ORTHO05D006756 9.0e-06 56.2 218 25.2


User provided reference genes

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