Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA232G2821 Erigeron canadensis HOM05D001849 ORTHO05D004689 0.0e+00 2124.0 1055 100.0
HanXRQChr09g0277131 Helianthus annuus HOM05D001849 ORTHO05D004689 0.0e+00 1727.6 1058 82.2
Lsat_1_v5_gn_4_91381 Lactuca sativa HOM05D001849 ORTHO05D004689 0.0e+00 1716.0 1075 80.8
vmacro15054 Vaccinium macrocarpon HOM05D001849 ORTHO05D004689 0.0e+00 1463.0 1098 69.0
CiPaw.01G216000 Carya illinoinensis HOM05D001849 ORTHO05D004689 0.0e+00 1462.2 1089 69.4
Sopen12g023890 Solanum pennellii HOM05D001849 ORTHO05D004689 0.0e+00 1455.7 1076 69.1
QL05p003662 Quercus lobata HOM05D001849 ORTHO05D004689 0.0e+00 1452.2 1106 68.5
Cfa003503 Carpinus fangiana HOM05D001849 ORTHO05D004689 0.0e+00 1442.2 1099 68.7
CSS0036951 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 0.0e+00 1437.2 1086 69.2
Prupe.3G037400 Prunus persica HOM05D001849 ORTHO05D004689 0.0e+00 1433.3 1091 68.8
SGA_v2.0_scaffold4G02078 Striga asiatica HOM05D001849 ORTHO05D004689 0.0e+00 1425.2 1069 68.8
Manes.11G016400 Manihot esculenta HOM05D001849 ORTHO05D004689 0.0e+00 1420.6 1094 67.7
TWI59G1440 Tripterygium wilfordii HOM05D001849 ORTHO05D004689 0.0e+00 1418.3 1095 66.7
RcHm_v2.0_Chr2g0146431 Rosa chinensis HOM05D001849 ORTHO05D004689 0.0e+00 1415.6 1083 68.1
Lj9C535G6 Lonicera japonica HOM05D001849 ORTHO05D004689 0.0e+00 1414.8 1062 70.2
Sabra01G0127400 Salix brachista HOM05D001849 ORTHO05D004689 0.0e+00 1410.2 1103 67.0
Solyc12g049410.3 Solanum lycopersicum HOM05D001849 ORTHO05D004689 0.0e+00 1406.0 1026 69.6
Potri.001G165900 Populus trichocarpa HOM05D001849 ORTHO05D004689 0.0e+00 1404.0 1097 67.2
MD09G1178100 Malus domestica HOM05D001849 ORTHO05D004689 0.0e+00 1401.3 1089 67.1
CSS0020628 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 0.0e+00 1399.8 1100 67.6
MBI13_g01700_MAGBIO Magnolia biondii HOM05D001849 ORTHO05D004689 0.0e+00 1390.9 1087 66.1
Gohir.A09G079900 Gossypium hirsutum HOM05D001849 ORTHO05D004689 0.0e+00 1389.0 1097 66.5
Ciclev10027090m.g Citrus clementina HOM05D001849 ORTHO05D004689 0.0e+00 1385.9 1096 66.0
Duzib192G0006 Durio zibethinus HOM05D001849 ORTHO05D004689 0.0e+00 1383.2 1091 66.5
PGR119G1999 Punica granatum HOM05D001849 ORTHO05D004689 0.0e+00 1383.2 1091 66.1
THA.LOC104822664 Tarenaya hassleriana HOM05D001849 ORTHO05D004689 0.0e+00 1381.3 1087 66.1
EL10Ac7g16444 Beta vulgaris HOM05D001849 ORTHO05D004689 0.0e+00 1380.5 1104 64.7
Duzib235G0671 Durio zibethinus HOM05D001849 ORTHO05D004689 0.0e+00 1380.2 1098 65.8
FvH4_6g35170 Fragaria vesca HOM05D001849 ORTHO05D004689 0.0e+00 1379.0 1081 66.4
FAN05G2930 Fragaria x ananassa HOM05D001849 ORTHO05D004689 0.0e+00 1369.0 1082 66.1
MD17G1148600 Malus domestica HOM05D001849 ORTHO05D004689 0.0e+00 1369.0 1095 65.7
Thhalv10019957m.g Eutrema salsugineum HOM05D001849 ORTHO05D004689 0.0e+00 1368.2 1082 65.3
AT3G14120 Arabidopsis thaliana HOM05D001849 ORTHO05D004689 0.0e+00 1366.3 1080 65.6
SalBow7G1889 Salvia bowleyana HOM05D001849 ORTHO05D004689 0.0e+00 1365.5 1196 61.0
Carub.0003s1373 Capsella rubella HOM05D001849 ORTHO05D004689 0.0e+00 1364.7 1082 65.1
Gorai.006G094800 Gossypium raimondii HOM05D001849 ORTHO05D004689 0.0e+00 1362.4 1120 64.7
Peaxi162Scf00177g00518 Petunia axillaris HOM05D001849 ORTHO05D004689 0.0e+00 1362.4 1071 66.5
C05p53520 Brassica napus HOM05D001849 ORTHO05D004689 0.0e+00 1359.4 1078 65.9
Gohir.D09G079550 Gossypium hirsutum HOM05D001849 ORTHO05D004689 0.0e+00 1358.2 1120 64.8
BolC5t34029H Brassica oleracea HOM05D001849 ORTHO05D004689 0.0e+00 1357.0 1077 65.6
A05p35330 Brassica napus HOM05D001849 ORTHO05D004689 0.0e+00 1356.7 1077 65.7
Lj3g0004011 Lotus japonicus HOM05D001849 ORTHO05D004689 0.0e+00 1356.3 1129 62.8
BolC1t05000H Brassica oleracea HOM05D001849 ORTHO05D004689 0.0e+00 1355.1 1091 64.8
FAN02G0489 Fragaria x ananassa HOM05D001849 ORTHO05D004689 0.0e+00 1353.6 1139 62.9
COL.COLO4_30797 Corchorus olitorius HOM05D001849 ORTHO05D004689 0.0e+00 1353.2 1096 65.2
Sp3g12380 Schrenkiella parvula HOM05D001849 ORTHO05D004689 0.0e+00 1352.8 1082 65.2
CANSAT56G0878 Cannabis sativa HOM05D001849 ORTHO05D004689 0.0e+00 1352.4 1078 65.4
AUR62001443 Chenopodium quinoa HOM05D001849 ORTHO05D004689 0.0e+00 1351.3 1064 65.9
Thecc.06G124800 Theobroma cacao HOM05D001849 ORTHO05D004689 0.0e+00 1350.5 1007 69.2
C01p50480 Brassica napus HOM05D001849 ORTHO05D004689 0.0e+00 1350.1 1091 64.6
DCAR_026423 Daucus carota HOM05D001849 ORTHO05D004689 0.0e+00 1350.1 1076 65.8
FAN14G1459 Fragaria x ananassa HOM05D001849 ORTHO05D004689 0.0e+00 1346.6 1081 65.3
PSO724G1390 Papaver somniferum HOM05D001849 ORTHO05D004689 0.0e+00 1345.9 1074 65.7
BcaC05g29121 Brassica carinata HOM05D001849 ORTHO05D004689 0.0e+00 1343.2 1078 65.3
Aqoxy7G04006 Aquilegia oxysepala HOM05D001849 ORTHO05D004689 0.0e+00 1342.8 1087 66.0
PSO386G0179 Papaver somniferum HOM05D001849 ORTHO05D004689 0.0e+00 1335.1 1069 65.4
Glyma.07G042000 Glycine max HOM05D001849 ORTHO05D004689 0.0e+00 1333.5 1092 63.7
BraA05t22343Z Brassica rapa HOM05D001849 ORTHO05D004689 0.0e+00 1328.9 1115 63.3
VMungo0331G1611 Vigna mungo HOM05D001849 ORTHO05D004689 0.0e+00 1328.9 1105 63.0
AL3G26350 Arabidopsis lyrata HOM05D001849 ORTHO05D004689 0.0e+00 1327.0 1028 66.1
TPR.G29992 Trifolium pratense HOM05D001849 ORTHO05D004689 0.0e+00 1323.1 1091 63.8
Rhsim08G0241300 Rhododendron simsii HOM05D001849 ORTHO05D004689 0.0e+00 1319.3 1082 65.1
Aa31LG8G1350 Aethionema arabicum HOM05D001849 ORTHO05D004689 0.0e+00 1318.9 1086 63.1
ClCG09G001140 Citrullus lanatus HOM05D001849 ORTHO05D004689 0.0e+00 1317.8 1144 61.6
Psat4g166880 Pisum sativum HOM05D001849 ORTHO05D004689 0.0e+00 1310.0 1107 62.6
Sed0016273 Sechium edule HOM05D001849 ORTHO05D004689 0.0e+00 1308.5 1086 62.9
AUR62009922 Chenopodium quinoa HOM05D001849 ORTHO05D004689 0.0e+00 1305.8 1097 63.1
CsaV3_7G034250 Cucumis sativus L. HOM05D001849 ORTHO05D004689 0.0e+00 1305.0 1123 61.9
Phvul.010G127100 Phaseolus vulgaris HOM05D001849 ORTHO05D004689 0.0e+00 1301.2 1084 62.9
Medtr8g022010 Medicago truncatula HOM05D001849 ORTHO05D004689 0.0e+00 1300.4 1075 62.9
FAN09G4066 Fragaria x ananassa HOM05D001849 ORTHO05D004689 0.0e+00 1284.2 1076 63.4
Cc04_g01040 Coffea canephora HOM05D001849 ORTHO05D004689 0.0e+00 1282.7 896 72.5
Haze_16076 Corylus avellana HOM05D001849 ORTHO05D004689 0.0e+00 1282.7 1191 60.2
GSVIVG01016717001 Vitis vinifera HOM05D001849 ORTHO05D004689 0.0e+00 1280.0 876 71.9
arahy.Tifrunner.gnm1.ann1.RMM65D Arachis hypogaea HOM05D001849 ORTHO05D004689 0.0e+00 1276.9 1051 63.3
arahy.Tifrunner.gnm1.ann1.1RN2YG Arachis hypogaea HOM05D001849 ORTHO05D004689 0.0e+00 1274.6 1051 63.1
CAN.G1243.9 Capsicum annuum HOM05D001849 ORTHO05D004689 0.0e+00 1261.5 863 72.4
Actinidia32206 Actinidia chinensis HOM05D001849 ORTHO05D004689 0.0e+00 1257.7 1089 62.2
ATR0681G401 Amborella trichopoda HOM05D001849 ORTHO05D004689 0.0e+00 1256.5 1078 60.0
Dinv20408 Davidia involucrata HOM05D001849 ORTHO05D004689 0.0e+00 1241.1 824 75.8
Eucgr.K02038 Eucalyptus grandis HOM05D001849 ORTHO05D004689 0.0e+00 1236.5 873 70.9
Atru.chr2.1505 Acer truncatum HOM05D001849 ORTHO05D004689 0.0e+00 1236.1 878 70.0
MELO3C024334.2 Cucumis melo HOM05D001849 ORTHO05D004689 0.0e+00 1227.6 1174 57.7
TAR626G0833 Trochodendron aralioides HOM05D001849 ORTHO05D004689 0.0e+00 1216.1 851 70.7
Hund18672 Selenicereus undatus HOM05D001849 ORTHO05D004689 0.0e+00 1209.1 880 69.0
Migut.D00924 Erythranthe guttata HOM05D001849 ORTHO05D004689 0.0e+00 1206.4 917 67.8
Oeu008524.4 Olea europaea HOM05D001849 ORTHO05D004689 0.0e+00 1190.3 1191 55.9
HPP92_022009 Vanilla planifolia HOM05D001849 ORTHO05D004689 0.0e+00 1178.7 1089 58.4
Nitab4.5_0000189g0010 Nicotiana tabacum HOM05D001849 ORTHO05D004689 0.0e+00 1177.5 834 70.3
Zm00001eb165950 Zea mays HOM05D001849 ORTHO05D004689 0.0e+00 1175.2 1084 58.1
Lalb_Chr10g0101321 Lupinus albus HOM05D001849 ORTHO05D004689 0.0e+00 1152.9 877 66.1
CDE06G0404 Ceratophyllum demersum HOM05D001849 ORTHO05D004689 0.0e+00 1126.7 1019 60.0
CSS0050059 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 0.0e+00 1125.2 1005 61.7
CSS0003623 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 0.0e+00 1118.2 1014 61.3
CDE07G1134 Ceratophyllum demersum HOM05D001849 ORTHO05D004689 0.0e+00 1082.0 868 63.8
unitig_578.g16691 Utricularia gibba HOM05D001849 ORTHO05D004689 4.6e-309 1064.7 1042 54.6
A01p39550 Brassica napus HOM05D001849 ORTHO05D004689 4.8e-306 1054.7 1082 54.4
Hma1.2p1_0229F.1_g096770 Hydrangea macrophylla HOM05D001849 ORTHO05D004689 4.9e-303 1044.6 705 74.2
Mapoly0024s0112 Marchantia polymorpha HOM05D001849 ORTHO05D004689 1.2e-259 900.6 979 48.8
AagrBONN_evm.TU.Sc2ySwM_362.2383 Anthoceros agrestis HOM05D001849 ORTHO05D004689 2.8e-258 896.0 976 48.6
Nitab4.5_0004322g0010 Nicotiana tabacum HOM05D001849 ORTHO05D004689 8.6e-255 884.4 650 69.2
SHI25232 Sapria himalayana HOM05D001849 ORTHO05D004689 2.2e-250 869.8 881 54.4
Hma1.2p1_0229F.1_g096760 Hydrangea macrophylla HOM05D001849 ORTHO05D004689 2.5e-246 856.3 603 71.6
Pp3c8_15880 Physcomitrium patens HOM05D001849 ORTHO05D004689 9.2e-241 837.8 969 46.2
SMO304G0023 Selaginella moellendorffii HOM05D001849 ORTHO05D004689 1.3e-215 754.2 942 44.1
Ca_23411_v3 Cicer arietinum L. HOM05D001849 ORTHO05D004689 1.8e-204 717.2 698 56.2
CARHR088980 Cardamine hirsuta HOM05D001849 ORTHO05D004689 1.3e-197 694.5 502 69.7
BraA01t03995Z Brassica rapa HOM05D001849 ORTHO05D004689 1.3e-191 674.5 542 65.1
Os11g0643700 Oryza sativa ssp. japonica HOM05D001849 ORTHO05D004689 1.7e-157 561.2 479 62.6
CBR_g39720 Chara braunii HOM05D001849 ORTHO05D004689 6.1e-144 516.2 1092 33.7
Ca_23412_v3 Cicer arietinum L. HOM05D001849 ORTHO05D004689 1.3e-141 508.4 402 66.4
FAN05G4033 Fragaria x ananassa HOM05D001849 ORTHO05D004689 3.0e-122 444.1 394 60.4
SEGI_21815 Sequoiadendron giganteum HOM05D001849 ORTHO05D004689 2.4e-116 424.5 394 54.8
Cpa.g.sc169.27 Carica papaya HOM05D001849 ORTHO05D004689 2.1e-115 421.4 319 66.8
Cpa.g.sc169.28 Carica papaya HOM05D001849 ORTHO05D004689 2.8e-88 331.3 250 68.8
CSS0033574 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 4.3e-73 280.8 230 66.1
CSS0020573 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 1.9e-68 265.4 238 61.3
QL11p014752 Quercus lobata HOM05D001849 ORTHO05D004689 6.1e-67 260.4 288 50.0
CSS0047517 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 1.1e-55 223.0 175 68.0
Glyma.16G010300 Glycine max HOM05D001849 ORTHO05D004689 2.2e-53 215.3 160 68.1
Cpa.g.sc169.30 Carica papaya HOM05D001849 ORTHO05D004689 8.5e-53 213.4 174 60.3
CSS0019722 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 8.8e-50 203.4 177 63.3
Lsat_1_v5_gn_3_42421 Lactuca sativa HOM05D001849 ORTHO05D004689 4.1e-47 194.5 161 64.0
Cc04_g01050 Coffea canephora HOM05D001849 ORTHO05D004689 7.0e-47 193.7 200 60.0
GSVIVG01016718001 Vitis vinifera HOM05D001849 ORTHO05D004689 1.1e-44 186.4 217 53.0
Lalb_Chr10g0101331 Lupinus albus HOM05D001849 ORTHO05D004689 7.2e-44 183.7 211 53.6
HPP92_021920 Vanilla planifolia HOM05D001849 ORTHO05D004689 1.6e-43 182.6 144 63.9
HanXRQChr11g0341991 Helianthus annuus HOM05D001849 ORTHO05D004689 1.5e-36 159.5 90 85.6
SEGI_09459 Sequoiadendron giganteum HOM05D001849 ORTHO05D004689 7.2e-36 157.1 176 47.7
Lsat_1_v5_gn_8_46020 Lactuca sativa HOM05D001849 ORTHO05D004689 1.2e-35 156.4 95 85.3
CAN.G1243.8 Capsicum annuum HOM05D001849 ORTHO05D004689 2.6e-33 148.7 182 50.0
MBI18_g40032_MAGBIO Magnolia biondii HOM05D000132 ORTHO05D000058 1.7e-32 146.0 106 65.1
Cpa.g.sc169.31 Carica papaya HOM05D001849 ORTHO05D004689 2.7e-30 138.7 84 77.4
Lsat_1_v5_gn_7_52500 Lactuca sativa HOM05D001849 ORTHO05D004689 4.5e-30 137.9 166 50.0
SEGI_30532 Sequoiadendron giganteum HOM05D001849 ORTHO05D004689 6.5e-29 134.0 89 67.4
CSS0036362 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 9.8e-25 120.2 105 58.1
CSS0036461 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 3.7e-24 118.2 100 61.0
Hund18673 Selenicereus undatus HOM05D001849 ORTHO05D004689 1.1e-23 116.7 162 49.4
CDE07G1706 Ceratophyllum demersum HOM05D001849 ORTHO05D004689 4.5e-22 111.3 203 42.4
Cpa.g.sc169.33 Carica papaya HOM05D001849 ORTHO05D004689 1.1e-20 106.7 163 47.2
PRCOL_00005073 Prasinoderma coloniale HOM05D001849 ORTHO05D004689 6.1e-19 100.9 426 25.8
SEGI_11558 Sequoiadendron giganteum HOM05D001849 ORTHO05D004689 1.4e-18 99.8 93 57.0
Duzib235G0009 Durio zibethinus HOM05D001849 ORTHO05D004689 4.0e-18 98.2 178 43.8
Cre10.g425675 Chlamydomonas reinhardtii HOM05D001849 ORTHO05D004689 2.0e-17 95.9 349 26.4
Cpa.g.sc169.29 Carica papaya HOM05D001849 ORTHO05D004689 4.4e-17 94.7 93 57.0
TAR730G0002 Trochodendron aralioides HOM05D001849 ORTHO05D004689 2.9e-16 92.0 151 46.4
MCO04G165 Micromonas commoda HOM05D001849 ORTHO05D004689 1.8e-15 89.4 423 24.8
MBI03_g16538_MAGBIO Magnolia biondii HOM05D001849 ORTHO05D004689 2.7e-14 85.5 67 59.7
BcaNung06672 Brassica carinata HOM05D001849 ORTHO05D004689 7.8e-14 84.0 208 32.2
MBI04_g26258_MAGBIO Magnolia biondii HOM05D001849 ORTHO05D004689 1.0e-13 83.6 54 68.5
MBI13_g27860_MAGBIO Magnolia biondii HOM05D001849 ORTHO05D004689 3.9e-13 81.6 53 71.7
CSS0004697 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 1.1e-12 80.1 100 48.0
MBI15_g17575_MAGBIO Magnolia biondii HOM05D001849 ORTHO05D004689 1.9e-12 79.3 53 69.8
Zm00001eb307710 Zea mays HOM05D001849 ORTHO05D004689 7.3e-12 77.4 71 57.7
C02p44100 Brassica napus HOM05D001849 ORTHO05D004689 4.0e-10 71.6 53 66.0
BolC2t10453H Brassica oleracea HOM05D001849 ORTHO05D004689 1.5e-09 69.7 53 66.0
PGSC0003DMG402004368 Solanum tuberosum HOM05D001849 ORTHO05D004689 3.4e-09 68.6 71 52.1
CSS0017686 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 2.2e-08 65.9 50 60.0
Hma1.2p1_0225F.1_g094790 Hydrangea macrophylla HOM05D001849 ORTHO05D004689 1.1e-07 63.5 130 40.0
CSS0002239 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 9.2e-07 60.5 41 70.7
Actinidia08004 Actinidia chinensis HOM05D001849 ORTHO05D004689 1.6e-06 59.7 36 80.6
Atru.chr12.2396 Acer truncatum HOM05D001849 ORTHO05D004689 6.0e-06 57.8 136 39.0
SMO304G0058 Selaginella moellendorffii HOM05D042764 ORTHO05D004689 7.8e-06 57.4 190 25.3


User provided reference genes

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