Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Duzib264G0885 Durio zibethinus HOM05D004134 ORTHO05D005240 0.0e+00 1401.7 681 100.0
Thecc.01G149600 Theobroma cacao HOM05D004134 ORTHO05D005240 0.0e+00 1302.0 680 91.9
Gohir.D12G002200 Gossypium hirsutum HOM05D004134 ORTHO05D005240 0.0e+00 1273.1 674 90.9
Gorai.008G001600 Gossypium raimondii HOM05D004134 ORTHO05D005240 0.0e+00 1272.3 674 91.1
Gohir.A12G002500 Gossypium hirsutum HOM05D004134 ORTHO05D005240 0.0e+00 1270.0 674 90.8
Duzib147G1693 Durio zibethinus HOM05D004134 ORTHO05D005240 0.0e+00 1269.2 658 92.2
COL.COLO4_33567 Corchorus olitorius HOM05D004134 ORTHO05D005240 0.0e+00 1214.9 705 84.1
Dinv19398 Davidia involucrata HOM05D004134 ORTHO05D005240 0.0e+00 1138.6 665 80.9
CiPaw.05G006000 Carya illinoinensis HOM05D004134 ORTHO05D005240 0.0e+00 1132.1 656 80.9
Potri.003G009600 Populus trichocarpa HOM05D004134 ORTHO05D005240 0.0e+00 1121.3 635 82.2
CSS0009525 Camellia sinensis var. sinensis HOM05D004134 ORTHO05D005240 0.0e+00 1114.8 622 83.4
CSS0031590 Camellia sinensis var. sinensis HOM05D004134 ORTHO05D005240 0.0e+00 1114.0 621 83.7
Ciclev10000416m.g Citrus clementina HOM05D004134 ORTHO05D005240 0.0e+00 1107.0 619 83.0
THA.LOC104801417 Tarenaya hassleriana HOM05D004134 ORTHO05D005240 0.0e+00 1101.7 646 79.7
Actinidia26163 Actinidia chinensis HOM05D004134 ORTHO05D005240 0.0e+00 1096.6 644 79.3
Manes.02G223500 Manihot esculenta HOM05D004134 ORTHO05D005240 0.0e+00 1095.1 617 83.0
Nn1g06242 Nelumbo nucifera HOM05D004134 ORTHO05D005240 0.0e+00 1093.6 650 78.9
Haze_10069 Corylus avellana HOM05D004134 ORTHO05D005240 0.0e+00 1093.2 649 79.5
Haze_10066 Corylus avellana HOM05D004134 ORTHO05D005240 0.0e+00 1092.8 678 77.1
PGR042G0619 Punica granatum HOM05D004134 ORTHO05D005240 0.0e+00 1089.3 645 79.2
Atru.chr6.762 Acer truncatum HOM05D004134 ORTHO05D005240 0.0e+00 1083.6 627 81.2
TAR381G1335 Trochodendron aralioides HOM05D004134 ORTHO05D005240 0.0e+00 1083.2 694 74.8
TWI23G0224 Tripterygium wilfordii HOM05D004134 ORTHO05D005240 0.0e+00 1082.8 639 78.7
RhsimUnG0241700 Rhododendron simsii HOM05D004134 ORTHO05D005240 0.0e+00 1081.2 679 75.6
CANSAT54G0881 Cannabis sativa HOM05D004134 ORTHO05D005240 0.0e+00 1078.9 676 75.7
Rhsim10G0097200 Rhododendron simsii HOM05D004134 ORTHO05D005240 0.0e+00 1075.8 695 74.0
PGSC0003DMG400024925 Solanum tuberosum HOM05D004134 ORTHO05D005240 0.0e+00 1075.5 644 77.5
Sed0024495 Sechium edule HOM05D004134 ORTHO05D005240 0.0e+00 1075.1 665 76.2
Lju50A15T20 Lonicera japonica HOM05D004134 ORTHO05D005240 5.6e-311 1070.5 680 74.9
Eucgr.G00349 Eucalyptus grandis HOM05D004134 ORTHO05D005240 1.7e-309 1065.4 619 80.1
Cfa014311 Carpinus fangiana HOM05D004134 ORTHO05D001258 3.0e-309 1064.7 615 80.8
Glyma.16G003700 Glycine max HOM05D004134 ORTHO05D005240 2.8e-307 1058.1 683 73.9
Phvul.006G218200 Phaseolus vulgaris HOM05D004134 ORTHO05D005240 2.4e-306 1055.0 634 77.9
Aa31LG3G10940 Aethionema arabicum HOM05D004134 ORTHO05D005240 4.0e-306 1054.3 644 75.6
Lj8C281T2 Lonicera japonica HOM05D004134 ORTHO05D005240 5.3e-306 1053.9 616 79.5
Glyma.12G167800 Glycine max HOM05D004134 ORTHO05D005240 2.6e-305 1051.6 634 77.6
QL02p100166 Quercus lobata HOM05D004134 ORTHO05D005240 5.8e-305 1050.4 682 73.9
GSVIVG01004116001 Vitis vinifera HOM05D004134 ORTHO05D005240 5.8e-305 1050.4 633 79.1
MELO3C022134.2 Cucumis melo HOM05D004134 ORTHO05D005240 7.6e-305 1050.0 655 75.6
Sc12g0003380 Simmondsia chinensis HOM05D004134 ORTHO05D005240 8.4e-304 1046.6 638 76.0
CsaV3_5G039580 Cucumis sativus L. HOM05D004134 ORTHO05D005240 1.6e-302 1042.3 655 75.0
VMungo0540G2254 Vigna mungo HOM05D004134 ORTHO05D005240 2.1e-302 1042.0 632 76.9
TPR.G2118 Trifolium pratense HOM05D004134 ORTHO05D005240 2.7e-302 1041.6 668 73.4
MSTRG.5116 Avicennia marina HOM05D004134 ORTHO05D005240 1.8e-301 1038.9 644 74.8
Prupe.7G053600 Prunus persica HOM05D004134 ORTHO05D005240 6.5e-296 1020.4 648 75.3
HanXRQChr07g0187421 Helianthus annuus HOM05D004134 ORTHO05D005240 8.4e-296 1020.0 660 73.8
Ca_00047_v3 Cicer arietinum L. HOM05D004134 ORTHO05D005240 1.1e-295 1019.6 619 75.8
arahy.Tifrunner.gnm1.ann1.FJZE1E Arachis hypogaea HOM05D004134 ORTHO05D005240 1.4e-295 1019.2 652 74.2
arahy.Tifrunner.gnm1.ann1.PV76CP Arachis hypogaea HOM05D004134 ORTHO05D005240 2.5e-295 1018.5 652 74.2
Sp4g27170 Schrenkiella parvula HOM05D004134 ORTHO05D005240 2.5e-295 1018.5 627 76.2
Psat0s1535g0080 Pisum sativum HOM05D004134 ORTHO05D005240 7.1e-295 1016.9 641 74.4
BcaC02g12241 Brassica carinata HOM05D004134 ORTHO05D005240 1.0e-293 1013.1 626 75.6
C04p06100 Brassica napus HOM05D004134 ORTHO05D005240 1.0e-293 1013.1 626 75.6
BolC4t22236H Brassica oleracea HOM05D004134 ORTHO05D005240 1.0e-293 1013.1 626 75.6
CAN.G798.51 Capsicum annuum HOM05D004134 ORTHO05D005240 2.3e-293 1011.9 644 74.8
A05p05210 Brassica napus HOM05D004134 ORTHO05D005240 5.1e-293 1010.7 619 75.9
BraA05t19492Z Brassica rapa HOM05D004134 ORTHO05D005240 1.1e-292 1009.6 618 76.1
BcaB02g08952 Brassica carinata HOM05D004134 ORTHO05D005240 1.5e-292 1009.2 622 75.7
SGA_v2.0_scaffold272G46372 Striga asiatica HOM05D004134 ORTHO05D005240 1.9e-292 1008.8 683 70.9
Lj6g0001374 Lotus japonicus HOM05D004134 ORTHO05D005240 2.5e-292 1008.4 627 74.6
Medtr2g006020 Medicago truncatula HOM05D004134 ORTHO05D005240 9.6e-292 1006.5 663 70.4
Carub.0004s2260 Capsella rubella HOM05D004134 ORTHO05D005240 1.3e-291 1006.1 627 75.1
Lj8C283T12 Lonicera japonica HOM05D004134 ORTHO05D005240 2.0e-289 998.8 616 75.8
AL4G38180 Arabidopsis lyrata HOM05D004134 ORTHO05D005240 5.8e-289 997.3 627 74.6
Migut.B00788 Erythranthe guttata HOM05D004134 ORTHO05D005240 6.5e-288 993.8 679 69.2
C03p29850 Brassica napus HOM05D004134 ORTHO05D005240 6.7e-285 983.8 626 73.8
BcaC01g05160 Brassica carinata HOM05D004134 ORTHO05D005240 5.7e-284 980.7 633 73.0
BolC3t15332H Brassica oleracea HOM05D004134 ORTHO05D005240 5.7e-284 980.7 626 73.6
BraA03t11704Z Brassica rapa HOM05D004134 ORTHO05D005240 7.4e-284 980.3 660 70.6
AT2G40360 Arabidopsis thaliana HOM05D004134 ORTHO05D005240 9.7e-284 979.9 627 73.2
A03p25010 Brassica napus HOM05D004134 ORTHO05D005240 1.3e-283 979.5 660 70.8
SGA_v2.0_scaffold304G47905 Striga asiatica HOM05D004134 ORTHO05D005240 2.2e-283 978.8 665 70.4
BcaB01g03295 Brassica carinata HOM05D004134 ORTHO05D005240 6.3e-283 977.2 617 74.2
Lsat_1_v5_gn_7_76380 Lactuca sativa HOM05D004134 ORTHO05D005240 1.1e-282 976.5 626 73.6
FvH4_5g21650 Fragaria vesca HOM05D004134 ORTHO05D005240 3.1e-282 974.9 682 68.9
FAN18G3216 Fragaria x ananassa HOM05D004134 ORTHO05D005240 6.9e-282 973.8 682 68.9
MD10G1070100 Malus domestica HOM05D004134 ORTHO05D005240 1.5e-281 972.6 638 73.0
Hund16551 Selenicereus undatus HOM05D004134 ORTHO05D005240 3.8e-280 968.0 686 68.4
CARHR135440 Cardamine hirsuta HOM05D004134 ORTHO05D005240 5.0e-280 967.6 668 68.1
vmacro19872 Vaccinium macrocarpon HOM05D004134 ORTHO05D005240 3.2e-279 964.9 624 73.7
Solyc01g103720.4 Solanum lycopersicum HOM05D004134 ORTHO05D005240 4.2e-279 964.5 564 78.7
MD05G1062400 Malus domestica HOM05D004134 ORTHO05D005240 1.4e-277 959.5 623 73.5
Potri.004G222500 Populus trichocarpa HOM05D004134 ORTHO05D005240 3.0e-277 958.4 539 81.4
PSO339G3543 Papaver somniferum HOM05D004134 ORTHO05D005240 2.4e-274 948.7 619 72.1
PSO384G1237 Papaver somniferum HOM05D004134 ORTHO05D005240 1.2e-273 946.4 683 66.9
Dinv07474 Davidia involucrata HOM05D004134 ORTHO05D005240 1.5e-273 946.0 556 80.9
MBI13_g20493_MAGBIO Magnolia biondii HOM05D004134 ORTHO05D005240 4.5e-273 944.5 639 72.3
DCAR_001836 Daucus carota HOM05D004134 ORTHO05D005240 1.0e-272 943.3 655 68.5
Thhalv10001320m.g Eutrema salsugineum HOM05D004134 ORTHO05D005240 1.7e-272 942.6 642 70.4
Oeu034147.1 Olea europaea HOM05D004134 ORTHO05D005240 1.4e-271 939.5 601 73.9
Sabra01G0168600 Salix brachista HOM05D004134 ORTHO05D005240 4.7e-270 934.5 706 66.3
Aqoxy6G03049 Aquilegia oxysepala HOM05D004134 ORTHO05D005240 3.0e-269 931.8 629 70.4
Hma1.2p1_0427F.1_g150710 Hydrangea macrophylla HOM05D004134 ORTHO05D005240 2.0e-268 929.1 624 72.0
PSO063G3695 Papaver somniferum HOM05D004134 ORTHO05D005240 3.3e-268 928.3 684 66.1
Zm00001eb131370 Zea mays HOM05D004134 ORTHO05D005240 4.8e-267 924.5 679 63.6
Sabra03G0005000 Salix brachista HOM05D004134 ORTHO05D005240 2.0e-265 919.1 638 71.8
EL10Ac6g14818 Beta vulgaris HOM05D004134 ORTHO05D005240 3.8e-264 914.8 644 67.2
FAN13G2390 Fragaria x ananassa HOM05D004134 ORTHO05D005240 3.3e-260 901.7 735 61.8
FAN04G2346 Fragaria x ananassa HOM05D004134 ORTHO05D005240 3.1e-258 895.2 690 64.8
unitig_899.g15494 Utricularia gibba HOM05D004134 ORTHO05D005240 1.2e-252 876.7 638 67.1
AL3G45050 Arabidopsis lyrata HOM05D004134 ORTHO05D005240 2.0e-249 865.9 620 67.1
SalBow1G3184 Salvia bowleyana HOM05D004134 ORTHO05D005240 1.5e-247 859.8 647 65.5
RcHm_v2.0_Chr7g0241541 Rosa chinensis HOM05D004134 ORTHO05D005240 7.5e-244 847.4 681 64.0
Mapoly0025s0073 Marchantia polymorpha HOM05D004134 ORTHO05D005240 2.0e-241 839.3 629 62.3
RcHm_v2.0_Chr7g0209131 Rosa chinensis HOM05D004134 ORTHO05D005240 7.7e-241 837.4 657 64.1
SalBow8G0286 Salvia bowleyana HOM05D004134 ORTHO05D005240 1.3e-240 836.6 646 64.4
Prupe.6G114000 Prunus persica HOM05D004134 ORTHO05D005240 1.0e-232 810.4 721 58.8
SMO361G0066 Selaginella moellendorffii HOM05D004134 ORTHO05D005240 8.6e-232 807.4 655 59.5
Haze_12759 Corylus avellana HOM05D004134 ORTHO05D005240 1.6e-230 803.1 524 74.0
Nitab4.5_0002596g0050 Nicotiana tabacum HOM05D004134 ORTHO05D005240 5.2e-229 798.1 650 61.4
CARHR115520 Cardamine hirsuta HOM05D004134 ORTHO05D005240 2.0e-228 796.2 553 68.5
Pp3c18_14790 Physcomitrium patens HOM05D004134 ORTHO05D005240 5.8e-228 794.7 644 58.1
CBR_g19000 Chara braunii HOM05D004134 ORTHO05D005240 8.6e-224 780.8 680 56.5
SMO004G0015 Selaginella moellendorffii HOM05D004134 ORTHO05D005240 2.2e-219 766.1 621 59.6
Cpa.g.sc612.1 Carica papaya HOM05D004134 ORTHO05D005240 3.9e-208 728.8 654 58.4
Sopen01g046140 Solanum pennellii HOM05D004134 ORTHO05D005240 7.3e-207 724.5 451 75.2
ClCG08G001520 Citrullus lanatus HOM05D004134 ORTHO05D005240 2.6e-204 716.1 456 73.5
Lalb_Chr21g0308281 Lupinus albus HOM05D004134 ORTHO05D005240 7.6e-204 714.5 430 77.0
Nitab4.5_0000948g0120 Nicotiana tabacum HOM05D004134 ORTHO05D005240 7.6e-204 714.5 650 56.6
AagrBONN_evm.TU.Sc2ySwM_344.2863 Anthoceros agrestis HOM05D004134 ORTHO05D005240 6.4e-203 711.4 559 61.7
SalBow8G3818 Salvia bowleyana HOM05D004134 ORTHO05D005240 2.3e-200 703.0 546 63.9
RcHm_v2.0_Chr7g0241521 Rosa chinensis HOM05D004134 ORTHO05D005240 2.2e-195 686.4 529 66.2
SalBow8G2435 Salvia bowleyana HOM05D004134 ORTHO05D005240 2.1e-193 679.9 647 56.0
Peaxi162Scf00011g00938 Petunia axillaris HOM05D004134 ORTHO05D005240 4.5e-188 662.1 410 76.1
Cc07_g19170 Coffea canephora HOM05D004134 ORTHO05D005240 3.1e-181 639.4 432 68.8
Ah.09g229700 Amaranthus hybridus HOM05D004134 ORTHO05D005240 1.0e-179 634.4 459 65.1
AUR62027202 Chenopodium quinoa HOM05D004134 ORTHO05D005240 6.5e-179 631.7 441 66.7
ATR0681G288 Amborella trichopoda HOM05D004134 ORTHO05D005240 4.8e-174 615.5 423 66.4
ATR0598G150 Amborella trichopoda HOM05D004134 ORTHO05D005240 1.5e-172 610.5 423 66.0
Cre10.g417950 Chlamydomonas reinhardtii HOM05D004134 ORTHO05D005240 2.5e-170 603.2 677 47.7
PRCOL_00006650 Prasinoderma coloniale HOM05D004134 ORTHO05D005240 2.2e-158 563.5 713 42.5
HPP92_014183 Vanilla planifolia HOM05D004134 ORTHO05D005240 6.1e-145 518.8 460 58.3
Haze_26888 Corylus avellana HOM05D004134 ORTHO05D005240 8.8e-144 515.0 650 40.9
AUR62003266 Chenopodium quinoa HOM05D004134 ORTHO05D005240 2.7e-140 503.4 458 55.7
Cfa026475 Carpinus fangiana HOM05D004134 ORTHO05D005240 3.2e-138 496.5 662 41.8
MCO01G460 Micromonas commoda HOM05D004134 ORTHO05D005240 9.5e-130 468.4 619 39.1
AL6G11500 Arabidopsis lyrata HOM05D004134 ORTHO05D005240 1.2e-127 461.5 319 68.0
Ah.09g232800 Amaranthus hybridus HOM05D004134 ORTHO05D005240 4.0e-112 409.8 434 49.5
Cpa.g.sc5814.1 Carica papaya HOM05D004134 ORTHO05D005240 3.3e-106 390.2 226 81.0
Cc07_g19180 Coffea canephora HOM05D004134 ORTHO05D005240 2.2e-94 350.9 189 84.1
Lalb_Chr21g0308271 Lupinus albus HOM05D004134 ORTHO05D005240 2.2e-94 350.9 192 83.9
Sopen01g046130 Solanum pennellii HOM05D004134 ORTHO05D005240 2.5e-90 337.4 183 84.2
TAR376G0266 Trochodendron aralioides HOM05D004134 ORTHO05D005240 1.7e-86 324.7 169 87.0
Carub.0008s0866 Capsella rubella HOM05D004134 ORTHO05D005240 1.5e-82 311.6 197 74.1
ATR0598G203 Amborella trichopoda HOM05D004134 ORTHO05D005240 1.2e-79 302.0 185 74.6
ATR0681G369 Amborella trichopoda HOM05D004134 ORTHO05D005240 3.4e-79 300.4 185 73.5
RcHm_v2.0_Chr7g0241531 Rosa chinensis HOM05D004134 ORTHO05D005240 1.4e-72 278.5 185 69.2
HPP92_014184 Vanilla planifolia HOM05D004134 ORTHO05D005240 9.9e-71 272.3 156 78.8
Ah.09g229690 Amaranthus hybridus HOM05D004134 ORTHO05D005240 2.3e-67 261.2 169 73.4
ClCG09G010900 Citrullus lanatus HOM05D004134 ORTHO05D005240 1.6e-65 255.0 136 85.3
ECA236G2574 Erigeron canadensis HOM05D004134 ORTHO05D005240 2.2e-62 244.6 159 76.1
A05p05190 Brassica napus HOM05D004134 ORTHO05D005240 9.0e-56 222.6 151 68.9
SalBow8G0646 Salvia bowleyana HOM05D004134 ORTHO05D005240 6.7e-51 206.5 103 88.3
BcaC02g12245 Brassica carinata HOM05D004134 ORTHO05D005240 2.6e-42 177.9 113 75.2
Peaxi162Scf00011g00939 Petunia axillaris HOM05D004134 ORTHO05D005240 4.1e-40 170.6 84 89.3
Lsat_1_v5_gn_5_138060 Lactuca sativa HOM05D004134 ORTHO05D005240 4.2e-37 160.6 111 67.6
TAR087G0001 Trochodendron aralioides HOM05D004134 ORTHO05D005240 5.5e-37 160.2 124 67.7
C04p06060 Brassica napus HOM05D004134 ORTHO05D005240 3.5e-31 141.0 79 79.7
BcaC01g05161 Brassica carinata HOM05D004134 ORTHO05D005240 9.4e-29 132.9 115 53.0
Migut.I00323 Erythranthe guttata HOM05D004134 ORTHO05D005240 3.3e-26 124.4 75 74.7
Psat2g083520 Pisum sativum HOM05D004134 ORTHO05D023219 1.1e-24 119.4 147 44.9
SGA_v2.0_scaffold318G48508 Striga asiatica HOM05D001260 ORTHO05D002424 1.1e-24 119.4 72 72.2
TPR.G18539 Trifolium pratense HOM05D001024 ORTHO05D000878 1.1e-24 119.4 85 64.7
Lsat_1_v5_gn_2_109841 Lactuca sativa HOM05D004134 ORTHO05D005240 2.4e-24 118.2 72 75.0
Ah.03g141930 Amaranthus hybridus HOM05D004134 ORTHO05D005240 1.9e-13 82.0 50 68.0
SGA_v2.0_scaffold94G28534 Striga asiatica HOM05D004134 ORTHO05D023219 1.4e-11 75.9 50 70.0
Atru.chr11.847 Acer truncatum HOM05D004134 ORTHO05D023219 6.8e-11 73.6 38 86.8
SGA_v2.0_scaffold2705G54186 Striga asiatica HOM05D004134 ORTHO05D023219 4.9e-09 67.4 43 72.1
Haze_09130 Corylus avellana HOM05D000645 ORTHO05D000494 1.2e-07 62.8 261 24.5
Eucgr.K01267 Eucalyptus grandis HOM05D002560 ORTHO05D003782 1.0e-06 59.7 222 24.8
Sabra01G0062700 Salix brachista HOM05D000645 ORTHO05D000494 1.0e-06 59.7 350 21.4
HPP92_014454 Vanilla planifolia HOM05D000645 ORTHO05D000494 1.7e-06 58.9 242 23.1
Rhsim11G0125000 Rhododendron simsii HOM05D004134 ORTHO05D339485 6.6e-06 57.0 63 50.8
HPP92_003386 Vanilla planifolia HOM05D004736 ORTHO05D006424 8.6e-06 56.6 104 28.8
HPP92_003388 Vanilla planifolia HOM05D004736 ORTHO05D006424 8.6e-06 56.6 104 28.8


User provided reference genes

Program Settings