Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Duzib212G0988 Durio zibethinus HOM05D006900 ORTHO05D008651 9.0e-218 760.8 663 100.0
Gohir.A10G171600 Gossypium hirsutum HOM05D006900 ORTHO05D008651 6.5e-160 568.5 642 86.4
Gorai.011G199800 Gossypium raimondii HOM05D006900 ORTHO05D008651 8.5e-160 568.2 643 86.5
Thecc.04G300100 Theobroma cacao HOM05D006900 ORTHO05D008651 2.1e-158 563.5 646 87.5
Gohir.D10G178700 Gossypium hirsutum HOM05D006900 ORTHO05D008651 8.0e-158 561.6 643 86.2
COL.COLO4_34620 Corchorus olitorius HOM05D006900 ORTHO05D008651 5.2e-141 505.8 616 85.4
GSVIVG01034997001 Vitis vinifera HOM05D006900 ORTHO05D008651 2.6e-108 397.1 639 74.8
TAR362G0296 Trochodendron aralioides HOM05D006900 ORTHO05D008651 5.8e-108 396.0 656 73.9
Hma1.2p1_0013F.1_g008570 Hydrangea macrophylla HOM05D006900 ORTHO05D008651 5.4e-106 389.4 658 72.8
Manes.03G204600 Manihot esculenta HOM05D006900 ORTHO05D008651 5.4e-106 389.4 660 74.7
Cfa015319 Carpinus fangiana HOM05D006900 ORTHO05D008651 2.3e-104 384.0 641 74.1
TWI09G0824 Tripterygium wilfordii HOM05D006900 ORTHO05D008651 1.5e-103 381.3 651 73.7
Haze_01304 Corylus avellana HOM05D006900 ORTHO05D008651 1.6e-102 377.9 642 74.5
MD13G1154800 Malus domestica HOM05D006900 ORTHO05D008651 3.6e-102 376.7 638 73.8
QL06p012004 Quercus lobata HOM05D006900 ORTHO05D008651 6.2e-102 375.9 658 74.2
Prupe.1G117800 Prunus persica HOM05D006900 ORTHO05D008651 2.4e-101 374.0 636 73.6
Sabra10G0112000 Salix brachista HOM05D006900 ORTHO05D008651 1.2e-100 371.7 673 71.8
Dinv15174 Davidia involucrata HOM05D006900 ORTHO05D008651 9.9e-100 368.6 558 81.5
Potri.010G145000 Populus trichocarpa HOM05D006900 ORTHO05D008651 2.9e-99 367.1 666 71.5
CAN.G274.12 Capsicum annuum HOM05D006900 ORTHO05D008651 4.9e-99 366.3 658 71.7
PGR004G2297 Punica granatum HOM05D006900 ORTHO05D008651 6.4e-99 365.9 653 71.8
arahy.Tifrunner.gnm1.ann1.Z0RY6M Arachis hypogaea HOM05D006900 ORTHO05D008651 3.2e-98 363.6 646 73.7
Nn3g21725 Nelumbo nucifera HOM05D006900 ORTHO05D008651 4.2e-98 363.2 677 70.3
Peaxi162Scf00681g00223 Petunia axillaris HOM05D006900 ORTHO05D008651 5.4e-98 362.8 672 69.9
Solyc04g009020.4 Solanum lycopersicum HOM05D006900 ORTHO05D008651 7.1e-98 362.5 660 71.2
PGSC0003DMG400011531 Solanum tuberosum HOM05D006900 ORTHO05D008651 9.3e-98 362.1 660 71.4
Ciclev10004521m.g Citrus clementina HOM05D006900 ORTHO05D008651 1.6e-97 361.3 629 74.1
arahy.Tifrunner.gnm1.ann1.88EKIY Arachis hypogaea HOM05D006900 ORTHO05D008651 7.9e-97 359.0 647 73.0
Atru.chr4.3007 Acer truncatum HOM05D006900 ORTHO05D008651 1.0e-96 358.6 643 72.5
Lj6A690T75 Lonicera japonica HOM05D006900 ORTHO05D008651 1.0e-96 358.6 647 73.9
Eucgr.H04042 Eucalyptus grandis HOM05D006900 ORTHO05D008651 3.9e-96 356.7 577 69.8
CSS0034541 Camellia sinensis var. sinensis HOM05D006900 ORTHO05D008651 6.7e-96 355.9 665 71.0
Sopen04g004200 Solanum pennellii HOM05D006900 ORTHO05D008651 1.9e-95 354.4 659 70.6
Lj4g0008712 Lotus japonicus HOM05D006900 ORTHO05D008651 5.6e-95 352.8 633 72.8
CiPaw.02G075100 Carya illinoinensis HOM05D006900 ORTHO05D008651 2.8e-94 350.5 599 76.1
Actinidia13360 Actinidia chinensis HOM05D006900 ORTHO05D008651 2.4e-93 347.4 645 71.5
Nitab4.5_0004979g0030 Nicotiana tabacum HOM05D006900 ORTHO05D008651 1.3e-91 341.7 685 68.0
CANSAT64G2951 Cannabis sativa HOM05D006900 ORTHO05D008651 1.7e-91 341.3 642 71.0
Lalb_Chr07g0182071 Lupinus albus HOM05D006900 ORTHO05D008651 3.2e-90 337.0 637 70.6
Cc03_g00870 Coffea canephora HOM05D006900 ORTHO05D008651 7.1e-90 335.9 669 69.7
ClCG05G006560 Citrullus lanatus HOM05D006900 ORTHO05D008651 1.2e-89 335.1 642 70.4
FvH4_4g19660 Fragaria vesca HOM05D006900 ORTHO05D008651 2.1e-89 334.3 627 72.2
Nitab4.5_0010299g0060 Nicotiana tabacum HOM05D006900 ORTHO05D008651 2.1e-89 334.3 714 52.7
HanXRQChr13g0393421 Helianthus annuus HOM05D006900 ORTHO05D008651 4.6e-89 333.2 634 70.3
FAN07G1219 Fragaria x ananassa HOM05D006900 ORTHO05D008651 1.3e-88 331.6 624 71.5
FAN12G3178 Fragaria x ananassa HOM05D006900 ORTHO05D008651 1.8e-88 331.3 629 71.9
Sp3g15260 Schrenkiella parvula HOM05D006900 ORTHO05D008651 1.8e-88 331.3 603 73.8
C05p49400 Brassica napus HOM05D006900 ORTHO05D008651 3.0e-88 330.5 588 74.5
MSTRG.10150 Avicennia marina HOM05D006900 ORTHO05D008651 3.9e-88 330.1 679 69.2
Medtr4g122060 Medicago truncatula HOM05D006900 ORTHO05D008651 6.7e-88 329.3 647 69.4
BraA05t22092Z Brassica rapa HOM05D006900 ORTHO05D008651 1.5e-87 328.2 588 74.1
Carub.0003s1679 Capsella rubella HOM05D006900 ORTHO05D008651 1.5e-87 328.2 590 75.4
Lsat_1_v5_gn_6_18120 Lactuca sativa HOM05D006900 ORTHO05D008651 1.5e-87 328.2 653 68.9
Aa31LG8G4070 Aethionema arabicum HOM05D006900 ORTHO05D008651 1.9e-87 327.8 625 72.3
A05p32690 Brassica napus HOM05D006900 ORTHO05D008651 1.9e-87 327.8 588 74.1
CARHR092290 Cardamine hirsuta HOM05D006900 ORTHO05D008651 4.3e-87 326.6 603 73.5
Psat0s740g0280 Pisum sativum HOM05D006900 ORTHO05D008651 7.4e-87 325.9 564 75.2
RcHm_v2.0_Chr4g0425111 Rosa chinensis HOM05D006900 ORTHO05D008651 7.4e-87 325.9 627 71.6
BcaC05g28835 Brassica carinata HOM05D006900 ORTHO05D008651 1.3e-86 325.1 590 74.1
BolC5t33686H Brassica oleracea HOM05D006900 ORTHO05D008651 1.3e-86 325.1 590 74.1
CsaV3_3G015170 Cucumis sativus L. HOM05D006900 ORTHO05D008651 1.3e-86 325.1 642 69.9
THA.LOC104820304 Tarenaya hassleriana HOM05D006900 ORTHO05D008651 1.6e-86 324.7 651 70.2
Thhalv10020271m.g Eutrema salsugineum HOM05D006900 ORTHO05D008651 6.2e-86 322.8 589 75.0
Glyma.17G033400 Glycine max HOM05D006900 ORTHO05D008651 8.2e-86 322.4 644 69.6
SGA_v2.0_scaffold104G30080 Striga asiatica HOM05D006900 ORTHO05D008651 8.2e-86 322.4 661 70.0
Glyma.07G240000 Glycine max HOM05D006900 ORTHO05D008651 1.4e-85 321.6 642 69.6
Ah.04g156910 Amaranthus hybridus HOM05D006900 ORTHO05D008651 2.4e-85 320.9 638 69.1
BcaB06g25797 Brassica carinata HOM05D006900 ORTHO05D008651 2.4e-85 320.9 590 73.9
MBI18_g32026_MAGBIO Magnolia biondii HOM05D006900 ORTHO05D008651 2.4e-85 320.9 535 80.6
CDE12G0762 Ceratophyllum demersum HOM05D006900 ORTHO05D008651 3.1e-85 320.5 642 69.2
unitig_748.g8700 Utricularia gibba HOM05D006900 ORTHO05D008651 3.1e-85 320.5 645 68.1
MELO3C006715.2 Cucumis melo HOM05D006900 ORTHO05D008651 4.0e-85 320.1 642 69.5
PSO357G0537 Papaver somniferum HOM05D006900 ORTHO05D008651 4.0e-85 320.1 680 67.1
Migut.G00056 Erythranthe guttata HOM05D006900 ORTHO05D008651 1.2e-84 318.5 644 70.2
Aqoxy5G02843 Aquilegia oxysepala HOM05D006900 ORTHO05D008651 2.6e-84 317.4 538 78.8
VMungo1215G0487 Vigna mungo HOM05D006900 ORTHO05D008651 3.4e-84 317.0 655 69.2
ECA233G1261 Erigeron canadensis HOM05D006900 ORTHO05D008651 4.5e-84 316.6 524 80.5
Rhsim02G0004000 Rhododendron simsii HOM05D006900 ORTHO05D008651 7.6e-84 315.8 714 43.0
AL3G30020 Arabidopsis lyrata HOM05D006900 ORTHO05D008651 1.3e-83 315.1 591 73.9
PSO170G0176 Papaver somniferum HOM05D006900 ORTHO05D008651 2.9e-83 313.9 683 66.8
AUR62016204 Chenopodium quinoa HOM05D006900 ORTHO05D008651 1.6e-81 308.1 512 81.1
AUR62039284 Chenopodium quinoa HOM05D006900 ORTHO05D008651 7.9e-81 305.8 512 80.9
ATR0693G010 Amborella trichopoda HOM05D006900 ORTHO05D008651 1.5e-79 301.6 600 72.2
Phvul.003G114100 Phaseolus vulgaris HOM05D006900 ORTHO05D008651 9.7e-79 298.9 540 76.5
vmacro15184 Vaccinium macrocarpon HOM05D006900 ORTHO05D008651 3.7e-78 297.0 663 66.2
Sc15g0003210 Simmondsia chinensis HOM05D006900 ORTHO05D008651 2.4e-77 294.3 567 75.3
EL10Ac3g05503 Beta vulgaris HOM05D006900 ORTHO05D008651 8.5e-75 285.8 541 40.7
Zm00001eb014810 Zea mays HOM05D006900 ORTHO05D008651 1.9e-74 284.6 542 76.4
TPR.G16830 Trifolium pratense HOM05D006900 ORTHO05D008651 2.5e-74 284.3 633 55.9
Sed0008833 Sechium edule HOM05D006900 ORTHO05D008651 2.1e-73 281.2 552 75.7
Hma1.2p1_0013F.1_g008580 Hydrangea macrophylla HOM05D006900 ORTHO05D008651 1.1e-69 268.9 223 63.7
Hund03124 Selenicereus undatus HOM05D006900 ORTHO05D008651 6.9e-69 266.2 721 57.3
Ca_21442_v3 Cicer arietinum L. HOM05D006900 ORTHO05D008651 1.2e-68 265.4 246 59.3
CDE01G0483 Ceratophyllum demersum HOM05D006900 ORTHO05D008651 1.1e-66 258.8 253 56.9
DCAR_030472 Daucus carota HOM05D006900 ORTHO05D008651 3.2e-66 257.3 628 60.7
AT3G17040 Arabidopsis thaliana HOM05D006900 ORTHO05D008651 2.6e-60 237.7 225 58.7
SalBow8G4068 Salvia bowleyana HOM05D006900 ORTHO05D008651 1.7e-59 235.0 212 60.4
Gohir.A10G171900 Gossypium hirsutum HOM05D006900 ORTHO05D008651 7.4e-55 219.5 192 64.1
Os03g0308800 Oryza sativa ssp. japonica HOM05D006900 ORTHO05D008651 5.5e-50 203.4 164 62.8
SEGI_12330 Sequoiadendron giganteum HOM05D006900 ORTHO05D008651 9.7e-47 192.6 496 73.6
Gohir.A10G171950 Gossypium hirsutum HOM05D006900 ORTHO05D008651 2.4e-45 188.0 114 82.5
CANSAT78G0722 Cannabis sativa HOM05D006900 ORTHO05D008651 2.5e-42 177.9 249 45.4
Cpa.g.sc9.62 Carica papaya HOM05D006900 ORTHO05D008651 2.3e-40 171.4 192 66.1
Mapoly0078s0010 Marchantia polymorpha HOM05D006900 ORTHO05D008651 6.6e-35 153.3 110 64.5
AagrBONN_evm.TU.Sc2ySwM_368.516 Anthoceros agrestis HOM05D006900 ORTHO05D008651 2.5e-34 151.4 140 54.3
Pp3c1_20310 Physcomitrium patens HOM05D006900 ORTHO05D008651 2.8e-30 137.9 172 45.9
SMO115G0152 Selaginella moellendorffii HOM05D006900 ORTHO05D008651 2.7e-28 131.3 110 59.1
CBR_g12177 Chara braunii HOM05D006900 ORTHO05D008651 4.5e-28 130.6 172 42.4
CSS0028196 Camellia sinensis var. sinensis HOM05D006900 ORTHO05D008651 2.9e-27 127.9 80 80.0
CSS0035140 Camellia sinensis var. sinensis HOM05D006900 ORTHO05D008651 3.3e-26 124.4 80 77.5
Cpa.g.sc9.61 Carica papaya HOM05D006900 ORTHO05D008651 1.0e-24 119.4 189 43.9
SGA_v2.0_scaffold157G37400 Striga asiatica HOM05D006900 ORTHO05D008651 1.7e-19 102.1 256 36.7
Cre09.g416200 Chlamydomonas reinhardtii HOM05D006900 ORTHO05D008651 9.5e-18 96.3 178 35.4
Oeu032012.1 Olea europaea HOM05D006900 ORTHO05D008651 3.6e-17 94.4 107 50.5
MCO01G208 Micromonas commoda HOM05D006900 ORTHO05D008651 6.2e-17 93.6 120 42.5
Oeu032144.1 Olea europaea HOM05D006900 ORTHO05D008651 1.9e-13 82.0 72 91.7
PRCOL_00006040 Prasinoderma coloniale HOM05D001216 ORTHO05D005688 6.0e-12 77.0 120 35.8


User provided reference genes

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