Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Duzib168G2252 Durio zibethinus HOM05D006496 ORTHO05D008390 2.7e-106 388.7 195 100.0
COL.COLO4_18451 Corchorus olitorius HOM05D006496 ORTHO05D008390 1.7e-63 246.5 190 68.4
Thecc.09G327500 Theobroma cacao HOM05D006496 ORTHO05D008390 4.1e-62 241.9 182 67.6
Atru.chr3.3823 Acer truncatum HOM05D006496 ORTHO05D008390 8.1e-42 174.5 194 50.5
QL01p033240 Quercus lobata HOM05D006496 ORTHO05D008390 4.4e-40 168.7 187 48.1
QL01p033291 Quercus lobata HOM05D006496 ORTHO05D008390 4.4e-40 168.7 187 48.1
Ciclev10028859m.g Citrus clementina HOM05D006496 ORTHO05D008390 1.3e-39 167.2 165 53.3
CiPaw.13G099300 Carya illinoinensis HOM05D006496 ORTHO05D008390 1.5e-35 153.7 136 51.5
MD03G1099500 Malus domestica HOM05D006496 ORTHO05D008390 6.9e-33 144.8 198 41.4
Manes.04G031000 Manihot esculenta HOM05D006496 ORTHO05D008390 3.8e-31 139.0 181 44.8
QL01p033212 Quercus lobata HOM05D006496 ORTHO05D008390 3.2e-30 136.0 154 48.1
Potri.009G027600 Populus trichocarpa HOM05D006496 ORTHO05D008390 1.7e-28 130.2 142 47.2
Prupe.6G084300 Prunus persica HOM05D006496 ORTHO05D008390 3.9e-28 129.0 168 44.6
FAN16G0777 Fragaria x ananassa HOM05D006496 ORTHO05D008390 1.9e-27 126.7 126 49.2
RcHm_v2.0_Chr5g0062931 Rosa chinensis HOM05D006496 ORTHO05D008390 4.3e-27 125.6 130 48.5
MD11G1113700 Malus domestica HOM05D006496 ORTHO05D008390 1.3e-26 124.0 204 40.2
TWI75G0988 Tripterygium wilfordii HOM05D006496 ORTHO05D008390 3.6e-26 122.5 178 43.3
FvH4_3g35010 Fragaria vesca HOM05D006496 ORTHO05D008390 1.4e-25 120.6 134 46.3
FAN11G0827 Fragaria x ananassa HOM05D006496 ORTHO05D008390 2.0e-24 116.7 159 40.3
Nitab4.5_0003498g0030 Nicotiana tabacum HOM05D006496 ORTHO05D008390 3.4e-24 115.9 185 38.4
Actinidia37238 Actinidia chinensis HOM05D006496 ORTHO05D008390 2.2e-23 113.2 179 39.7
Prupe.6G084200 Prunus persica HOM05D006496 ORTHO05D008390 3.8e-23 112.5 131 48.9
MD03G1099400 Malus domestica HOM05D006496 ORTHO05D008390 6.4e-23 111.7 203 37.9
TPR.G34315 Trifolium pratense HOM05D006496 ORTHO05D008390 1.1e-22 110.9 145 43.4
CSS0000664 Camellia sinensis var. sinensis HOM05D006496 ORTHO05D008390 1.4e-22 110.5 169 39.6
Actinidia07064 Actinidia chinensis HOM05D006496 ORTHO05D008390 1.9e-22 110.2 188 37.8
FAN21G0875 Fragaria x ananassa HOM05D006496 ORTHO05D008390 3.2e-22 109.4 134 42.5
Oeu058535.1 Olea europaea HOM05D006496 ORTHO05D008390 3.2e-22 109.4 172 38.4
RcHm_v2.0_Chr5g0062921 Rosa chinensis HOM05D006496 ORTHO05D008390 5.4e-22 108.6 179 38.5
CARHR273380 Cardamine hirsuta HOM05D006496 ORTHO05D008390 2.1e-21 106.7 133 45.1
Rhsim13G0086700 Rhododendron simsii HOM05D006496 ORTHO05D008390 2.1e-21 106.7 210 34.8
Medtr2g096520 Medicago truncatula HOM05D006496 ORTHO05D008390 2.7e-21 106.3 149 40.3
Thhalv10014093m.g Eutrema salsugineum HOM05D006496 ORTHO05D008390 3.5e-21 105.9 125 48.8
FAN25G3002 Fragaria x ananassa HOM05D006496 ORTHO05D008390 3.5e-21 105.9 173 41.0
Peaxi162Scf00411g00117 Petunia axillaris HOM05D006496 ORTHO05D008390 1.8e-20 103.6 163 38.0
CSS0042381 Camellia sinensis var. sinensis HOM05D006496 ORTHO05D008390 3.0e-20 102.8 216 34.7
AT5G59800 Arabidopsis thaliana HOM05D006496 ORTHO05D008390 3.9e-20 102.4 129 48.1
A03p11480 Brassica napus HOM05D006496 ORTHO05D008390 3.9e-20 102.4 124 46.8
BraA03t10462Z Brassica rapa HOM05D006496 ORTHO05D008390 3.9e-20 102.4 124 46.8
Carub.0008s2046 Capsella rubella HOM05D006496 ORTHO05D008390 5.1e-20 102.1 149 42.3
FvH4_3g35002 Fragaria vesca HOM05D006496 ORTHO05D008390 5.1e-20 102.1 173 41.6
FAN11G2800 Fragaria x ananassa HOM05D006496 ORTHO05D008390 5.1e-20 102.1 173 41.6
AL8G36350 Arabidopsis lyrata HOM05D006496 ORTHO05D008390 6.7e-20 101.7 131 46.6
BcaC04g19631 Brassica carinata HOM05D006496 ORTHO05D008390 8.7e-20 101.3 184 37.5
BcaB08g36218 Brassica carinata HOM05D006496 ORTHO05D008390 1.5e-19 100.5 185 37.8
Sp6g21470 Schrenkiella parvula HOM05D006496 ORTHO05D008390 1.5e-19 100.5 125 45.6
C03p13280 Brassica napus HOM05D006496 ORTHO05D008390 1.9e-19 100.1 124 46.0
BolC3t13791H Brassica oleracea HOM05D006496 ORTHO05D008390 1.9e-19 100.1 124 46.0
C09p52290 Brassica napus HOM05D006496 ORTHO05D008390 2.5e-19 99.8 184 37.5
BolC9t58098H Brassica oleracea HOM05D006496 ORTHO05D008390 2.5e-19 99.8 184 37.5
SalBow3G1961 Salvia bowleyana HOM05D006496 ORTHO05D008390 2.5e-19 99.8 169 37.3
Ah.08g218920 Amaranthus hybridus HOM05D006496 ORTHO05D008390 4.3e-19 99.0 183 39.3
BraA10t43786Z Brassica rapa HOM05D006496 ORTHO05D008390 9.6e-19 97.8 185 37.8
BcaC01g06549 Brassica carinata HOM05D006496 ORTHO05D008390 1.3e-18 97.4 169 38.5
HanXRQChr01g0009851 Helianthus annuus HOM05D006496 ORTHO05D008390 1.3e-18 97.4 152 39.5
A10p17060 Brassica napus HOM05D006496 ORTHO05D008390 2.1e-18 96.7 185 37.8
Lj2A1055T49 Lonicera japonica HOM05D006496 ORTHO05D008390 2.1e-18 96.7 201 35.3
vmacro03111 Vaccinium macrocarpon HOM05D006496 ORTHO05D008390 2.1e-18 96.7 209 33.5
Sopen11g030740 Solanum pennellii HOM05D006496 ORTHO05D008390 2.8e-18 96.3 165 35.2
CAN.G420.5 Capsicum annuum HOM05D006496 ORTHO05D008390 4.8e-18 95.5 157 40.1
Sc06g0008220 Simmondsia chinensis HOM05D006496 ORTHO05D008390 8.1e-18 94.7 189 40.2
Solyc11g073080.3 Solanum lycopersicum HOM05D006496 ORTHO05D008390 1.1e-17 94.4 165 34.5
Hma1.2p1_0035F.1_g022050 Hydrangea macrophylla HOM05D006496 ORTHO05D008390 1.8e-17 93.6 175 34.3
Lsat_1_v5_gn_9_22140 Lactuca sativa HOM05D006496 ORTHO05D008390 1.8e-17 93.6 225 32.0
FAN21G2388 Fragaria x ananassa HOM05D006496 ORTHO05D008390 4.0e-17 92.4 209 34.4
THA.LOC104810806 Tarenaya hassleriana HOM05D006496 ORTHO05D008390 4.0e-17 92.4 161 36.6
FAN16G2573 Fragaria x ananassa HOM05D006496 ORTHO05D008390 6.9e-17 91.7 184 35.9
Psat5g284080 Pisum sativum HOM05D006496 ORTHO05D008390 9.0e-17 91.3 141 41.1
GSVIVG01025031001 Vitis vinifera HOM05D006496 ORTHO05D008390 1.2e-16 90.9 155 38.7
Aa31sc23G160 Aethionema arabicum HOM05D006496 ORTHO05D008390 2.6e-16 89.7 125 43.2
Cc01_g12300 Coffea canephora HOM05D006496 ORTHO05D008390 4.5e-16 89.0 216 30.6
Sabra09G0018800 Salix brachista HOM05D006496 ORTHO05D008390 4.5e-16 89.0 202 31.7
HanXRQChr04g0106921 Helianthus annuus HOM05D006496 ORTHO05D008390 2.2e-15 86.7 209 32.1
FAN25G1110 Fragaria x ananassa HOM05D006496 ORTHO05D008390 2.9e-15 86.3 161 33.5
Migut.D02127 Erythranthe guttata HOM05D006496 ORTHO05D008390 6.4e-15 85.1 173 31.8
A02p06850 Brassica napus HOM05D006496 ORTHO05D008390 8.4e-15 84.7 137 38.7
C02p12140 Brassica napus HOM05D006496 ORTHO05D008390 8.4e-15 84.7 137 38.7
BraA02t05763Z Brassica rapa HOM05D006496 ORTHO05D008390 8.4e-15 84.7 144 38.2
ECA247G0375 Erigeron canadensis HOM05D006496 ORTHO05D008390 1.1e-14 84.3 224 29.0
Prupe.6G084500 Prunus persica HOM05D006496 ORTHO05D008390 1.1e-14 84.3 141 40.4
Lsat_1_v5_gn_5_167360 Lactuca sativa HOM05D006496 ORTHO05D008390 1.4e-14 84.0 143 37.8
ATR0680G240 Amborella trichopoda HOM05D003520 ORTHO05D003332 2.1e-13 80.1 154 36.4
HanXRQChr01g0009831 Helianthus annuus HOM05D006496 ORTHO05D008390 4.6e-13 79.0 130 36.9
Nitab4.5_0009215g0030 Nicotiana tabacum HOM05D006496 ORTHO05D008390 4.6e-13 79.0 255 27.5
ECA248G1113 Erigeron canadensis HOM05D006496 ORTHO05D008390 6.0e-13 78.6 181 32.6
SGA_v2.0_scaffold61G21263 Striga asiatica HOM05D006496 ORTHO05D008390 2.5e-11 73.2 162 34.6
PGSC0003DMG400015535 Solanum tuberosum HOM05D006496 ORTHO05D008390 4.8e-10 68.9 88 37.5
Cpa.g.sc190.31 Carica papaya HOM05D006496 ORTHO05D008390 6.2e-10 68.6 97 44.3
Lj3g0009171 Lotus japonicus HOM05D006496 ORTHO05D008390 8.2e-10 68.2 55 65.5
Medtr4g008590 Medicago truncatula HOM05D006496 ORTHO05D008390 1.1e-09 67.8 70 50.0
TPR.G34303 Trifolium pratense HOM05D006496 ORTHO05D008390 6.9e-09 65.1 117 39.3
TAR375G0279 Trochodendron aralioides HOM05D003520 ORTHO05D003332 6.9e-09 65.1 155 32.3
Glyma.07G118700 Glycine max HOM05D006496 ORTHO05D008390 1.5e-08 63.9 49 63.3
arahy.Tifrunner.gnm1.ann1.4RYS79 Arachis hypogaea HOM05D006496 ORTHO05D008390 2.0e-08 63.5 53 52.8
arahy.Tifrunner.gnm1.ann1.7PT1R0 Arachis hypogaea HOM05D006496 ORTHO05D008390 2.0e-08 63.5 53 52.8
AUR62009623 Chenopodium quinoa HOM05D006496 ORTHO05D008390 2.0e-08 63.5 71 39.4
Hund04996 Selenicereus undatus HOM05D006496 ORTHO05D008390 2.0e-08 63.5 59 49.2
Ca_01342_v3 Cicer arietinum L. HOM05D006496 ORTHO05D008390 3.4e-08 62.8 89 39.3
Phvul.004G007200 Phaseolus vulgaris HOM05D006496 ORTHO05D008390 5.8e-08 62.0 98 40.8
AUR62001835 Chenopodium quinoa HOM05D006496 ORTHO05D008390 7.6e-08 61.6 63 46.0
EL10Ac7g15965 Beta vulgaris HOM05D006496 ORTHO05D008390 1.3e-07 60.8 65 46.2
Cc02_g03140 Coffea canephora HOM05D003520 ORTHO05D003332 1.7e-07 60.5 127 34.6
Duzib093G1405 Durio zibethinus HOM05D006496 ORTHO05D004692 1.7e-07 60.5 58 43.1
Sopen03g004790 Solanum pennellii HOM05D012625 ORTHO05D003332 1.7e-07 60.5 132 33.3
Cfa012135 Carpinus fangiana HOM05D003520 ORTHO05D003332 2.2e-07 60.1 167 32.3
DCAR_008413 Daucus carota HOM05D003520 ORTHO05D003332 2.2e-07 60.1 146 32.2
Glyma.13G333300 Glycine max HOM05D006496 ORTHO05D008390 2.2e-07 60.1 65 41.5
Lalb_Chr22g0349991 Lupinus albus HOM05D006496 ORTHO05D008390 2.9e-07 59.7 54 53.7
MD03G1092700 Malus domestica HOM05D004190 ORTHO05D004692 2.9e-07 59.7 63 50.8
Solyc03g025970.3 Solanum lycopersicum HOM05D012625 ORTHO05D003332 2.9e-07 59.7 132 33.3
Phvul.L002943 Phaseolus vulgaris HOM05D006496 ORTHO05D008390 3.8e-07 59.3 80 41.2
Psat5g284120 Pisum sativum HOM05D006496 ORTHO05D008390 3.8e-07 59.3 74 40.5
DCAR_015607 Daucus carota HOM05D006496 ORTHO05D008390 4.9e-07 58.9 63 47.6
Sed0005114 Sechium edule HOM05D003520 ORTHO05D003332 4.9e-07 58.9 125 33.6
MSTRG.21183 Avicennia marina HOM05D006496 ORTHO05D008390 6.5e-07 58.5 138 34.1
CAN.G1704.2 Capsicum annuum HOM05D012625 ORTHO05D003332 6.5e-07 58.5 133 30.8
Cfa011508 Carpinus fangiana HOM05D004190 ORTHO05D004692 6.5e-07 58.5 155 29.0
MD11G1107500 Malus domestica HOM05D004190 ORTHO05D004692 6.5e-07 58.5 63 50.8
PGSC0003DMG400014327 Solanum tuberosum HOM05D012625 ORTHO05D003332 6.5e-07 58.5 132 33.3
Lj3g0006193 Lotus japonicus HOM05D006496 ORTHO05D008390 1.1e-06 57.8 64 50.0
VMungo1080G1046 Vigna mungo HOM05D006496 ORTHO05D008390 1.1e-06 57.8 49 57.1
Lj2g0020727 Lotus japonicus HOM05D003520 ORTHO05D003332 1.9e-06 57.0 126 37.3
Manes.01G173632 Manihot esculenta HOM05D004190 ORTHO05D004692 1.9e-06 57.0 44 54.5
SHI05942 Sapria himalayana HOM05D004190 ORTHO05D004692 2.5e-06 56.6 72 38.9
Phvul.004G006200 Phaseolus vulgaris HOM05D006496 ORTHO05D008390 3.2e-06 56.2 53 52.8
ClCG03G001470 Citrullus lanatus HOM05D004190 ORTHO05D004692 4.2e-06 55.8 73 35.6
Gohir.A11G021700 Gossypium hirsutum HOM05D003520 ORTHO05D003332 4.2e-06 55.8 149 31.5
TWI81G1024 Tripterygium wilfordii HOM05D003520 ORTHO05D003332 4.2e-06 55.8 130 30.8
CiPaw.04G135700 Carya illinoinensis HOM05D004190 ORTHO05D004692 5.5e-06 55.5 39 61.5
Manes.02G024900 Manihot esculenta HOM05D003520 ORTHO05D003332 5.5e-06 55.5 140 27.1
AT5G59380 Arabidopsis thaliana HOM05D004190 ORTHO05D004692 7.1e-06 55.1 84 38.1
Thecc.05G039400 Theobroma cacao HOM05D014374 ORTHO05D020491 7.1e-06 55.1 44 54.5
VMungo0464G2068 Vigna mungo HOM05D006496 ORTHO05D008390 7.1e-06 55.1 69 44.9
Duzib084G0866 Durio zibethinus HOM05D003520 ORTHO05D003332 9.3e-06 54.7 128 32.8
PSO782G3336 Papaver somniferum HOM05D003520 ORTHO05D003332 9.3e-06 54.7 152 30.3


User provided reference genes

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