Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Duzib084G1177 Durio zibethinus HOM05D005564 ORTHO05D006872 4.3e-164 581.3 290 100.0
Thecc.03G145600 Theobroma cacao HOM05D005564 ORTHO05D006872 2.0e-137 492.7 289 84.1
Gohir.A13G032000 Gossypium hirsutum HOM05D005564 ORTHO05D006872 1.3e-136 490.0 291 84.5
Gohir.D07G048900 Gossypium hirsutum HOM05D005564 ORTHO05D006872 2.2e-136 489.2 291 84.5
Gorai.001G052100 Gossypium raimondii HOM05D005564 ORTHO05D006872 8.4e-136 487.3 291 84.2
Gorai.007G289400 Gossypium raimondii HOM05D005564 ORTHO05D006872 7.8e-134 480.7 290 83.4
Gorai.005G129900 Gossypium raimondii HOM05D005564 ORTHO05D006872 2.3e-133 479.2 291 83.5
COL.COLO4_37310 Corchorus olitorius HOM05D005564 ORTHO05D006872 3.1e-122 442.2 259 85.3
Manes.06G130000 Manihot esculenta HOM05D005564 ORTHO05D006872 4.3e-116 421.8 292 73.3
Cfa013601 Carpinus fangiana HOM05D005564 ORTHO05D006872 6.2e-115 417.9 292 72.6
Gorai.013G121700 Gossypium raimondii HOM05D005564 ORTHO05D006872 2.6e-113 412.5 261 81.2
Sabra15G0133100 Salix brachista HOM05D005564 ORTHO05D006872 1.3e-112 410.2 290 71.4
Cpa.g.sc13.231 Carica papaya HOM05D005564 ORTHO05D006872 1.7e-112 409.8 294 70.7
Potri.015G111628 Populus trichocarpa HOM05D005564 ORTHO05D006872 2.9e-112 409.1 289 71.3
FvH4_7g26720 Fragaria vesca HOM05D005564 ORTHO05D006872 3.8e-112 408.7 290 70.3
Gohir.A07G044400 Gossypium hirsutum HOM05D005564 ORTHO05D006872 1.6e-110 403.3 265 76.2
GSVIVG01024470001 Vitis vinifera HOM05D005564 ORTHO05D006872 3.0e-109 399.1 285 69.8
TAR629G2772 Trochodendron aralioides HOM05D005564 ORTHO05D006872 3.3e-108 395.6 293 69.6
MD07G1241800 Malus domestica HOM05D005564 ORTHO05D006872 4.3e-108 395.2 290 68.3
Dinv34536 Davidia involucrata HOM05D005564 ORTHO05D006872 6.3e-107 391.3 274 71.9
THA.LOC104825050 Tarenaya hassleriana HOM05D005564 ORTHO05D006872 1.4e-106 390.2 292 68.2
CSS0008072 Camellia sinensis var. sinensis HOM05D005564 ORTHO05D006872 6.9e-106 387.9 290 68.6
Ciclev10032148m.g Citrus clementina HOM05D005564 ORTHO05D006872 6.9e-106 387.9 314 64.6
Atru.chr6.1979 Acer truncatum HOM05D005564 ORTHO05D006872 3.4e-105 385.6 245 75.1
Atru.chr6.2007 Acer truncatum HOM05D005564 ORTHO05D006872 3.4e-105 385.6 245 75.1
TWI39G1038 Tripterygium wilfordii HOM05D005564 ORTHO05D006872 4.5e-105 385.2 290 68.6
Prupe.2G270700 Prunus persica HOM05D005564 ORTHO05D006872 5.9e-105 384.8 285 67.4
Hma1.2p1_1014F.1_g247960 Hydrangea macrophylla HOM05D005564 ORTHO05D006872 1.3e-104 383.6 292 67.5
Hma1.2p1_1305F.1_g274526 Hydrangea macrophylla HOM05D005564 ORTHO05D006872 1.3e-104 383.6 292 67.5
Haze_22223 Corylus avellana HOM05D005564 ORTHO05D006872 1.7e-104 383.3 278 71.2
Lalb_Chr19g0127411 Lupinus albus HOM05D005564 ORTHO05D006872 1.7e-104 383.3 288 67.4
Migut.F00541 Erythranthe guttata HOM05D005564 ORTHO05D006872 2.2e-104 382.9 295 67.1
CANSAT56G0249 Cannabis sativa HOM05D005564 ORTHO05D006872 6.5e-104 381.3 290 66.9
CiPaw.07G183300 Carya illinoinensis HOM05D005564 ORTHO05D006872 8.5e-104 380.9 235 77.0
VMungo1383G3643 Vigna mungo HOM05D005564 ORTHO05D006872 8.5e-104 380.9 288 68.8
QL09p027441 Quercus lobata HOM05D005564 ORTHO05D006872 1.1e-103 380.6 288 68.4
MD07G1243700 Malus domestica HOM05D005564 ORTHO05D006872 1.4e-103 380.2 290 65.5
Nitab4.5_0003973g0040 Nicotiana tabacum HOM05D005564 ORTHO05D006872 5.5e-103 378.3 291 66.3
Glyma.01G079300 Glycine max HOM05D005564 ORTHO05D006872 9.3e-103 377.5 288 67.0
Lj1g0017373 Lotus japonicus HOM05D005564 ORTHO05D006872 9.3e-103 377.5 288 68.8
TPR.G39148 Trifolium pratense HOM05D005564 ORTHO05D006872 2.7e-102 375.9 303 65.7
HanXRQChr08g0221891 Helianthus annuus HOM05D005564 ORTHO05D006872 3.6e-102 375.6 291 66.7
Thhalv10014247m.g Eutrema salsugineum HOM05D005564 ORTHO05D006872 7.9e-102 374.4 296 66.9
BraSC35t46004Z Brassica rapa HOM05D005564 ORTHO05D006872 1.0e-101 374.0 295 65.1
Sp6g13380 Schrenkiella parvula HOM05D005564 ORTHO05D006872 1.3e-101 373.6 293 66.6
Aa31LG3G7670 Aethionema arabicum HOM05D005564 ORTHO05D006872 1.8e-101 373.2 295 64.4
HanXRQChr08g0223121 Helianthus annuus HOM05D005564 ORTHO05D006872 1.8e-101 373.2 291 66.7
A10p07960 Brassica napus HOM05D005564 ORTHO05D006872 2.3e-101 372.9 295 64.7
Phvul.008G143300 Phaseolus vulgaris HOM05D005564 ORTHO05D006872 3.9e-101 372.1 284 66.9
FAN06G0976 Fragaria x ananassa HOM05D005564 ORTHO05D006872 5.1e-101 371.7 261 70.5
AL8G25430 Arabidopsis lyrata HOM05D005564 ORTHO05D006872 8.7e-101 370.9 295 66.1
Carub.0008s1121 Capsella rubella HOM05D005564 ORTHO05D006872 8.7e-101 370.9 295 64.7
Medtr0053s0020 Medicago truncatula HOM05D005564 ORTHO05D006872 8.7e-101 370.9 303 63.0
C09p39850 Brassica napus HOM05D005564 ORTHO05D006872 1.1e-100 370.5 294 64.3
AT5G51170 Arabidopsis thaliana HOM05D005564 ORTHO05D006872 1.9e-100 369.8 290 65.2
BcaC04g20726 Brassica carinata HOM05D005564 ORTHO05D006872 2.5e-100 369.4 294 63.9
BolC9t56884H Brassica oleracea HOM05D005564 ORTHO05D006872 2.5e-100 369.4 294 63.9
arahy.Tifrunner.gnm1.ann1.2T0BFY Arachis hypogaea HOM05D005564 ORTHO05D006872 4.3e-100 368.6 288 67.0
FAN03G1301 Fragaria x ananassa HOM05D005564 ORTHO05D006872 7.4e-100 367.9 261 70.1
EL10Ac7g17720 Beta vulgaris HOM05D005564 ORTHO05D006872 1.6e-99 366.7 347 57.3
Phvul.005G030000 Phaseolus vulgaris HOM05D005564 ORTHO05D006872 4.8e-99 365.2 288 65.3
TAR636G1392 Trochodendron aralioides HOM05D005564 ORTHO05D008130 4.8e-99 365.2 278 67.6
CsaV3_5G005020 Cucumis sativus L. HOM05D005564 ORTHO05D006872 1.8e-98 363.2 291 62.5
BcaB08g35471 Brassica carinata HOM05D005564 ORTHO05D006872 2.4e-98 362.8 296 63.2
PGR042G2925 Punica granatum HOM05D005564 ORTHO05D006872 2.4e-98 362.8 294 64.6
CARHR256880 Cardamine hirsuta HOM05D005564 ORTHO05D006872 4.1e-98 362.1 295 64.7
Nn6g33765 Nelumbo nucifera HOM05D005564 ORTHO05D006872 1.2e-97 360.5 290 64.1
SalBow3G4594 Salvia bowleyana HOM05D005564 ORTHO05D006872 1.2e-97 360.5 288 64.6
MSTRG.27230 Avicennia marina HOM05D005564 ORTHO05D006872 2.6e-97 359.4 292 63.0
Ca_27086_v3 Cicer arietinum L. HOM05D005564 ORTHO05D006872 2.6e-97 359.4 277 68.2
vmacro19959 Vaccinium macrocarpon HOM05D005564 ORTHO05D006872 1.7e-96 356.7 286 66.4
Eucgr.A02932 Eucalyptus grandis HOM05D005564 ORTHO05D006872 2.9e-96 355.9 295 62.4
PSO063G5398 Papaver somniferum HOM05D005564 ORTHO05D006872 2.9e-96 355.9 289 61.9
Ah.08g213710 Amaranthus hybridus HOM05D005564 ORTHO05D006872 1.9e-95 353.2 286 64.0
Lj8A49G34 Lonicera japonica HOM05D005564 ORTHO05D006872 2.5e-95 352.8 258 69.8
VMungo1080G0069 Vigna mungo HOM05D005564 ORTHO05D006872 3.2e-95 352.4 329 58.4
ClCG01G004820 Citrullus lanatus HOM05D005564 ORTHO05D006872 1.2e-94 350.5 296 61.5
Oeu030874.1 Olea europaea HOM05D005564 ORTHO05D006872 1.4e-93 347.1 287 62.4
Hund18321 Selenicereus undatus HOM05D005564 ORTHO05D006872 1.4e-93 347.1 278 64.4
SGA_v2.0_scaffold60G20845 Striga asiatica HOM05D005564 ORTHO05D006872 1.8e-93 346.7 292 61.6
DCAR_020165 Daucus carota HOM05D005564 ORTHO05D006872 8.8e-93 344.4 287 63.8
ECA233G5472 Erigeron canadensis HOM05D005564 ORTHO05D006872 1.5e-92 343.6 259 67.2
CAN.G309.23 Capsicum annuum HOM05D005564 ORTHO05D006872 2.0e-92 343.2 292 61.3
CSS0031726 Camellia sinensis var. sinensis HOM05D005564 ORTHO05D006872 4.8e-91 338.6 285 63.5
MD01G1175500 Malus domestica HOM05D005564 ORTHO05D006872 4.8e-91 338.6 319 55.8
Cc00_g13030 Coffea canephora HOM05D005564 ORTHO05D006872 6.3e-91 338.2 290 60.3
Sed0010204 Sechium edule HOM05D005564 ORTHO05D006872 1.4e-90 337.0 271 62.7
ClCG09G010750 Citrullus lanatus HOM05D005564 ORTHO05D006872 3.1e-90 335.9 282 61.3
PGSC0003DMG400008328 Solanum tuberosum HOM05D005564 ORTHO05D006872 3.1e-90 335.9 291 60.1
Sopen03g024760 Solanum pennellii HOM05D005564 ORTHO05D006872 4.1e-90 335.5 291 60.1
Solyc03g093880.3 Solanum lycopersicum HOM05D005564 ORTHO05D006872 1.5e-89 333.6 291 59.8
PSO782G4004 Papaver somniferum HOM05D005564 ORTHO05D006872 4.5e-89 332.0 289 59.5
Peaxi162Scf00073g01727 Petunia axillaris HOM05D005564 ORTHO05D006872 3.8e-88 328.9 291 60.8
CDE02G1506 Ceratophyllum demersum HOM05D005564 ORTHO05D006872 5.5e-87 325.1 285 58.6
MD07G1244900 Malus domestica HOM05D005564 ORTHO05D006872 9.4e-87 324.3 206 74.3
RcHm_v2.0_Chr1g0373311 Rosa chinensis HOM05D005564 ORTHO05D006872 3.6e-86 322.4 224 71.9
PSO017G2767 Papaver somniferum HOM05D005564 ORTHO05D006872 4.4e-84 315.5 257 61.5
FAN10G0633 Fragaria x ananassa HOM05D005564 ORTHO05D006872 7.4e-84 314.7 224 70.5
SHI14145 Sapria himalayana HOM05D005564 ORTHO05D000001 9.7e-84 314.3 286 60.8
AUR62008825 Chenopodium quinoa HOM05D005564 ORTHO05D006872 1.1e-82 310.8 207 71.5
AUR62025416 Chenopodium quinoa HOM05D005564 ORTHO05D006872 7.0e-82 308.1 212 69.3
ATR0188G007 Amborella trichopoda HOM05D005564 ORTHO05D006872 2.2e-80 303.1 283 57.6
MELO3C005454.2 Cucumis melo HOM05D005564 ORTHO05D006872 2.9e-80 302.8 225 67.1
Zm00001eb249040 Zea mays HOM05D005564 ORTHO05D006872 6.5e-80 301.6 288 54.5
FAN01G2799 Fragaria x ananassa HOM05D005564 ORTHO05D006872 1.6e-78 297.0 296 55.4
Gorai.006G046400 Gossypium raimondii HOM05D005564 ORTHO05D006872 1.4e-74 283.9 225 69.8
Rhsim03G0157100 Rhododendron simsii HOM05D005564 ORTHO05D006872 3.1e-74 282.7 266 59.0
unitig_21.g20780 Utricularia gibba HOM05D005564 ORTHO05D006872 2.7e-73 279.6 253 57.7
SEGI_35477 Sequoiadendron giganteum HOM05D005564 ORTHO05D006872 2.4e-66 256.5 277 49.8
Medtr0092s0090 Medicago truncatula HOM05D005564 ORTHO05D006872 2.2e-64 250.0 217 61.3
Nitab4.5_0000103g0380 Nicotiana tabacum HOM05D005564 ORTHO05D006872 2.5e-63 246.5 167 70.7
Os02g0651000 Oryza sativa ssp. japonica HOM05D005564 ORTHO05D006872 3.0e-61 239.6 188 61.2
Sc19g0002740 Simmondsia chinensis HOM05D005564 ORTHO05D006872 8.8e-61 238.0 203 60.6
MD07G1243300 Malus domestica HOM05D005564 ORTHO05D006872 7.5e-60 235.0 233 56.2
Nn6g32633 Nelumbo nucifera HOM05D005564 ORTHO05D006872 1.7e-59 233.8 203 60.1
arahy.Tifrunner.gnm1.ann1.R6MN5Z Arachis hypogaea HOM05D005564 ORTHO05D006872 3.1e-58 229.6 277 50.2
SMO145G0164 Selaginella moellendorffii HOM05D005564 ORTHO05D006872 3.5e-57 226.1 296 42.6
MD07G1245400 Malus domestica HOM05D005564 ORTHO05D006872 7.8e-57 224.9 149 73.8
Hma1.2p1_1014F.1_g247920 Hydrangea macrophylla HOM05D005564 ORTHO05D006872 9.5e-55 218.0 181 61.9
Dinv34539 Davidia involucrata HOM05D005564 ORTHO05D006872 2.1e-54 216.9 269 49.4
AagrBONN_evm.TU.Sc2ySwM_228.2399 Anthoceros agrestis HOM05D005564 ORTHO05D006872 8.9e-53 211.5 245 45.7
CANSAT78G0945 Cannabis sativa HOM05D005564 ORTHO05D006872 2.2e-51 206.8 240 48.8
Gohir.D02G135666 Gossypium hirsutum HOM05D005564 ORTHO05D006872 2.9e-51 206.5 109 91.7
Gohir.D02G130966 Gossypium hirsutum HOM05D005564 ORTHO05D006872 3.5e-49 199.5 137 73.0
Aqoxy3G02663 Aquilegia oxysepala HOM05D005564 ORTHO05D006872 2.1e-46 190.3 130 72.3
Pp3c13_1340 Physcomitrium patens HOM05D005564 ORTHO05D006872 3.7e-43 179.5 244 43.9
Rhsim03G0158000 Rhododendron simsii HOM05D005564 ORTHO05D006872 3.7e-43 179.5 290 42.1
Prupe.4G133000 Prunus persica HOM05D005564 ORTHO05D006872 7.0e-42 175.3 170 55.3
CDE11G0070 Ceratophyllum demersum HOM05D005564 ORTHO05D006872 2.7e-41 173.3 209 50.2
CAN.G1016.1 Capsicum annuum HOM05D005564 ORTHO05D006872 2.3e-40 170.2 122 68.0
Lsat_1_v5_gn_8_13861 Lactuca sativa HOM05D000071 ORTHO05D006872 2.6e-36 156.8 118 66.1
Psat3g166160 Pisum sativum HOM05D005564 ORTHO05D006872 4.9e-35 152.5 219 44.3
CBR_g31024 Chara braunii HOM05D005564 ORTHO05D006872 4.6e-33 146.0 304 33.9
Psat3g164240 Pisum sativum HOM05D005564 ORTHO05D006872 1.7e-32 144.1 201 45.3
Nn6g32636 Nelumbo nucifera HOM05D005564 ORTHO05D006872 6.8e-29 132.1 88 72.7
Mapoly0036s0004 Marchantia polymorpha HOM05D005564 ORTHO05D006872 1.4e-21 107.8 178 41.0
MCO11G677 Micromonas commoda HOM05D005564 ORTHO05D006872 5.4e-18 95.9 250 27.2
Cre01.g041900 Chlamydomonas reinhardtii HOM05D005564 ORTHO05D006872 3.3e-15 86.7 224 27.7
Aqoxy3G02664 Aquilegia oxysepala HOM05D000665 ORTHO05D000140 2.3e-08 63.9 86 48.8


User provided reference genes

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