Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv42301 Davidia involucrata HOM05D004448 ORTHO05D005919 0.0e+00 1343.2 690 100.0
Dinv36750 Davidia involucrata HOM05D004448 ORTHO05D005919 1.5e-204 716.8 657 57.7
Hma1.2p1_0663F.1_g198910 Hydrangea macrophylla HOM05D004448 ORTHO05D005919 1.3e-174 617.5 636 52.7
QL02p063021 Quercus lobata HOM05D004448 ORTHO05D005919 7.2e-170 601.7 639 51.6
CSS0023607 Camellia sinensis var. sinensis HOM05D004448 ORTHO05D005919 1.2e-169 600.9 510 59.4
Actinidia25266 Actinidia chinensis HOM05D004448 ORTHO05D005919 4.9e-150 535.8 482 57.1
Cc06_g11170 Coffea canephora HOM05D004448 ORTHO05D005919 8.3e-150 535.0 632 47.8
GSVIVG01015227001 Vitis vinifera HOM05D004448 ORTHO05D005919 8.6e-147 525.0 571 51.1
Rhsim05G0022900 Rhododendron simsii HOM05D004448 ORTHO05D005919 5.6e-146 522.3 519 53.4
PGSC0003DMG400033614 Solanum tuberosum HOM05D004448 ORTHO05D005919 7.3e-146 521.9 554 50.2
RhsimUnG0189000 Rhododendron simsii HOM05D004448 ORTHO05D005919 1.1e-141 508.1 465 57.2
Haze_25890 Corylus avellana HOM05D004448 ORTHO05D005919 2.4e-141 506.9 571 49.7
Nitab4.5_0000713g0030 Nicotiana tabacum HOM05D004448 ORTHO05D005919 2.4e-141 506.9 646 44.6
vmacro22686 Vaccinium macrocarpon HOM05D004448 ORTHO05D005919 1.2e-140 504.6 477 55.8
vmacro17218 Vaccinium macrocarpon HOM05D004448 ORTHO05D005919 1.6e-140 504.2 477 55.8
CiPaw.03G218000 Carya illinoinensis HOM05D004448 ORTHO05D005919 3.0e-139 500.0 544 50.6
Cfa003108 Carpinus fangiana HOM05D004448 ORTHO05D005919 1.1e-138 498.0 571 49.0
Nitab4.5_0000938g0020 Nicotiana tabacum HOM05D004448 ORTHO05D005919 1.4e-136 491.1 532 49.8
Rhsim03G0233500 Rhododendron simsii HOM05D004448 ORTHO05D005919 3.5e-132 476.5 617 45.9
Peaxi162Scf00175g00047 Petunia axillaris HOM05D004448 ORTHO05D005919 1.0e-131 474.9 561 48.0
Thecc.09G092200 Theobroma cacao HOM05D004448 ORTHO05D005919 3.9e-131 473.0 635 45.0
CSS0050052 Camellia sinensis var. sinensis HOM05D004448 ORTHO05D005919 4.3e-130 469.5 554 47.5
Sopen07g011050 Solanum pennellii HOM05D004448 ORTHO05D005919 2.8e-129 466.8 492 51.0
Solyc07g021550.3 Solanum lycopersicum HOM05D004448 ORTHO05D005919 9.0e-128 461.8 492 51.0
Potri.006G150000 Populus trichocarpa HOM05D004448 ORTHO05D005919 1.6e-124 451.1 674 42.3
Prupe.7G212600 Prunus persica HOM05D004448 ORTHO05D005919 7.3e-122 442.2 486 49.4
TWI32G1061 Tripterygium wilfordii HOM05D004448 ORTHO05D005919 1.6e-121 441.0 482 49.8
Nn8g38906 Nelumbo nucifera HOM05D004448 ORTHO05D005919 1.1e-120 438.3 509 49.7
Duzib168G0645 Durio zibethinus HOM05D004448 ORTHO05D005919 6.9e-120 435.6 557 45.4
COL.COLO4_18221 Corchorus olitorius HOM05D004448 ORTHO05D005919 2.1e-116 424.1 546 45.8
ClCG03G015750 Citrullus lanatus HOM05D004448 ORTHO05D005919 5.1e-115 419.5 497 47.3
Oeu024590.1 Olea europaea HOM05D004448 ORTHO05D005919 1.5e-114 417.9 394 55.1
FAN23G3053 Fragaria x ananassa HOM05D004448 ORTHO05D005919 1.3e-113 414.8 669 38.0
FAN26G0987 Fragaria x ananassa HOM05D004448 ORTHO05D005919 3.1e-112 410.2 494 43.5
PGR142G4073 Punica granatum HOM05D004448 ORTHO05D005919 1.2e-111 408.3 487 48.5
FAN26G2794 Fragaria x ananassa HOM05D004448 ORTHO05D005919 7.6e-111 405.6 494 43.1
FAN19G1271 Fragaria x ananassa HOM05D004448 ORTHO05D005919 2.9e-110 403.7 665 37.6
RcHm_v2.0_Chr2g0093041 Rosa chinensis HOM05D004448 ORTHO05D005919 3.8e-110 403.3 497 44.5
CANSAT56G0950 Cannabis sativa HOM05D004448 ORTHO05D005919 6.5e-110 402.5 397 53.7
Eucgr.C00913 Eucalyptus grandis HOM05D004448 ORTHO05D005919 4.2e-109 399.8 585 41.9
Phvul.004G171600 Phaseolus vulgaris HOM05D004448 ORTHO05D005919 3.5e-108 396.7 494 48.2
FvH4_1g07151 Fragaria vesca HOM05D004448 ORTHO05D005919 6.0e-108 396.0 489 43.4
Sabra06G0118700 Salix brachista HOM05D004448 ORTHO05D005919 6.0e-108 396.0 482 47.1
DCAR_024685 Daucus carota HOM05D004448 ORTHO05D005919 7.9e-108 395.6 453 49.0
Nitab4.5_0004087g0010 Nicotiana tabacum HOM05D004448 ORTHO05D005919 3.9e-107 393.3 387 51.9
Lj2g0008301 Lotus japonicus HOM05D004448 ORTHO05D005919 5.1e-107 392.9 500 46.2
MELO3C015453.2 Cucumis melo HOM05D004448 ORTHO05D005919 3.3e-106 390.2 493 46.2
Lsat_1_v5_gn_5_145680 Lactuca sativa HOM05D004448 ORTHO05D005919 5.7e-106 389.4 400 54.2
Ciclev10010615m.g Citrus clementina HOM05D004448 ORTHO05D005919 7.4e-106 389.0 556 41.0
Manes.03G032000 Manihot esculenta HOM05D004448 ORTHO05D005919 1.3e-105 388.3 491 47.0
PSO210G3334 Papaver somniferum HOM05D004448 ORTHO05D005919 2.6e-103 380.6 506 43.3
PSO210G5509 Papaver somniferum HOM05D004448 ORTHO05D005919 2.2e-102 377.5 502 43.6
HanXRQChr12g0354731 Helianthus annuus HOM05D004448 ORTHO05D005919 9.3e-101 372.1 385 50.9
Glyma.07G128700 Glycine max HOM05D004448 ORTHO05D005919 2.7e-100 370.5 479 45.9
CsaV3_1G040260 Cucumis sativus L. HOM05D004448 ORTHO05D005919 1.0e-99 368.6 497 44.5
MBI08_g34934_MAGBIO Magnolia biondii HOM05D004448 ORTHO05D005919 2.5e-98 364.0 398 50.8
Gohir.D08G265800 Gossypium hirsutum HOM05D004448 ORTHO05D005919 7.4e-98 362.5 567 40.9
SalBow6G4094 Salvia bowleyana HOM05D004448 ORTHO05D005919 1.6e-97 361.3 395 49.6
Gohir.A08G245000 Gossypium hirsutum HOM05D004448 ORTHO05D005919 2.8e-97 360.5 566 41.0
ECA234G2909 Erigeron canadensis HOM05D004448 ORTHO05D005919 4.1e-96 356.7 290 59.7
AUR62031324 Chenopodium quinoa HOM05D004448 ORTHO05D005919 5.3e-96 356.3 493 41.6
EL10Ac8g19309 Beta vulgaris HOM05D004448 ORTHO05D005919 6.9e-96 355.9 489 41.9
Medtr7g090060 Medicago truncatula HOM05D004448 ORTHO05D005919 6.9e-96 355.9 388 50.5
Duzib150G0429 Durio zibethinus HOM05D004448 ORTHO05D005919 1.5e-95 354.8 711 35.7
CsaV3_UNG066510 Cucumis sativus L. HOM05D004448 ORTHO05D005919 3.4e-95 353.6 467 45.2
VMungo0464G0625 Vigna mungo HOM05D005189 ORTHO05D006093 4.5e-95 353.2 394 51.0
arahy.Tifrunner.gnm1.ann1.LLR3FQ Arachis hypogaea HOM05D004448 ORTHO05D005919 5.9e-95 352.8 390 50.5
arahy.Tifrunner.gnm1.ann1.6Q96ZG Arachis hypogaea HOM05D004448 ORTHO05D005919 1.0e-94 352.1 386 50.8
Gohir.D08G266000 Gossypium hirsutum HOM05D004448 ORTHO05D005919 3.8e-94 350.1 398 48.2
vmacro06280 Vaccinium macrocarpon HOM05D004448 ORTHO05D005919 3.8e-94 350.1 477 44.2
Psat1g049640 Pisum sativum HOM05D004448 ORTHO05D005919 4.2e-93 346.7 387 49.1
RcHm_v2.0_Chr2g0093031 Rosa chinensis HOM05D004448 ORTHO05D005919 9.4e-93 345.5 555 38.6
Aqoxy5G03492 Aquilegia oxysepala HOM05D004448 ORTHO05D005919 7.9e-92 342.4 430 43.7
Ah.14g085380 Amaranthus hybridus HOM05D004448 ORTHO05D005919 3.9e-91 340.1 480 41.2
Cpa.g.sc7.238 Carica papaya HOM05D004448 ORTHO05D005919 5.1e-91 339.7 317 55.8
AUR62027409 Chenopodium quinoa HOM05D004448 ORTHO05D005919 6.7e-91 339.3 477 41.9
Atru.chr7.1561 Acer truncatum HOM05D004448 ORTHO05D005919 8.8e-91 339.0 416 46.4
Medtr6g092520 Medicago truncatula HOM05D004448 ORTHO05D005919 1.7e-89 334.7 389 49.9
CDE09G0006 Ceratophyllum demersum HOM05D004448 ORTHO05D005919 1.8e-88 331.3 465 43.4
unitig_0.g218 Utricularia gibba HOM05D004448 ORTHO05D005919 2.0e-87 327.8 393 47.3
Sc18g0001910 Simmondsia chinensis HOM05D004448 ORTHO05D005919 1.9e-85 321.2 393 43.3
Hund06702 Selenicereus undatus HOM05D004448 ORTHO05D005919 2.1e-84 317.8 392 44.6
Ciclev10008074m.g Citrus clementina HOM05D004448 ORTHO05D005919 6.1e-84 316.2 551 37.6
Migut.J00591 Erythranthe guttata HOM05D004448 ORTHO05D005919 7.9e-84 315.8 305 54.8
Aa31LG3G12720 Aethionema arabicum HOM05D004448 ORTHO05D005919 2.8e-81 307.4 507 38.5
BcaC04g20054 Brassica carinata HOM05D004448 ORTHO05D005919 3.5e-79 300.4 441 41.3
Sp6g18520 Schrenkiella parvula HOM05D004448 ORTHO05D005919 7.7e-79 299.3 445 41.1
BolC9t57684H Brassica oleracea HOM05D004448 ORTHO05D005919 1.3e-78 298.5 440 40.9
BcaB08g36059 Brassica carinata HOM05D004448 ORTHO05D005919 1.5e-77 295.0 395 44.1
C09p48340 Brassica napus HOM05D004448 ORTHO05D005919 1.9e-77 294.7 441 40.8
AT5G56780 Arabidopsis thaliana HOM05D004448 ORTHO05D005919 2.5e-77 294.3 394 45.2
Thhalv10015325m.g Eutrema salsugineum HOM05D004448 ORTHO05D005919 3.6e-76 290.4 439 42.1
Carub.0008s1726 Capsella rubella HOM05D004448 ORTHO05D005919 4.7e-76 290.0 483 38.9
BraA10t43502Z Brassica rapa HOM05D004448 ORTHO05D005919 8.0e-76 289.3 397 42.8
A10p14110 Brassica napus HOM05D004448 ORTHO05D005919 1.0e-75 288.9 397 43.1
Gohir.A08G244900 Gossypium hirsutum HOM05D004448 ORTHO05D005919 3.3e-74 283.9 497 40.2
AL8G32620 Arabidopsis lyrata HOM05D004448 ORTHO05D005919 9.7e-74 282.3 528 36.4
THA.LOC104813490 Tarenaya hassleriana HOM05D004448 ORTHO05D005919 2.8e-73 280.8 524 36.8
Ca_08398_v3 Cicer arietinum L. HOM05D004448 ORTHO05D005919 1.2e-71 275.4 252 58.3
C04p01820 Brassica napus HOM05D004448 ORTHO05D005919 9.4e-69 265.8 400 41.0
BcaC02g12705 Brassica carinata HOM05D004448 ORTHO05D005919 2.1e-68 264.6 407 40.0
BraA05t19157Z Brassica rapa HOM05D004448 ORTHO05D005919 2.1e-68 264.6 425 39.5
CARHR270530 Cardamine hirsuta HOM05D004448 ORTHO05D005919 8.0e-68 262.7 416 39.9
Mapoly0070s0093 Marchantia polymorpha HOM05D004448 ORTHO05D005919 1.8e-67 261.5 422 37.7
BcaC02g12506 Brassica carinata HOM05D004448 ORTHO05D005919 2.3e-67 261.2 399 39.8
HPP92_006937 Vanilla planifolia HOM05D004448 ORTHO05D005919 3.0e-67 260.8 288 47.6
Aa31LG2G21230 Aethionema arabicum HOM05D004448 ORTHO05D005919 1.5e-66 258.5 385 40.5
FvH4_1g07150 Fragaria vesca HOM05D004448 ORTHO05D005919 7.5e-66 256.1 539 33.0
RhsimUnG0145000 Rhododendron simsii HOM05D004448 ORTHO05D005919 6.3e-65 253.1 247 52.2
A05p01610 Brassica napus HOM05D004448 ORTHO05D005919 4.5e-63 246.9 308 45.8
Zm00001eb325970 Zea mays HOM05D004448 ORTHO05D005919 7.7e-63 246.1 367 41.7
ATR0705G152 Amborella trichopoda HOM05D004448 ORTHO05D005919 1.3e-62 245.4 305 44.9
Rhsim03G0233900 Rhododendron simsii HOM05D004448 ORTHO05D005919 2.5e-61 241.1 291 44.0
Sed0012121 Sechium edule HOM05D004448 ORTHO05D005919 2.1e-60 238.0 347 40.9
Os07g0586700 Oryza sativa ssp. japonica HOM05D004448 ORTHO05D005919 1.2e-58 232.3 660 29.8
AagrBONN_evm.TU.Sc2ySwM_117.4075 Anthoceros agrestis HOM05D004448 ORTHO05D005919 1.3e-57 228.8 356 37.4
MD02G1076000 Malus domestica HOM05D004448 ORTHO05D005919 2.8e-57 227.6 154 70.8
RhsimUnG0144800 Rhododendron simsii HOM05D004448 ORTHO05D005919 2.0e-55 221.5 314 43.3
TPR.G40396 Trifolium pratense HOM05D004448 ORTHO05D005919 1.0e-54 219.2 240 50.8
Rhsim05G0023200 Rhododendron simsii HOM05D004448 ORTHO05D005919 2.9e-54 217.6 300 43.3
Pp3c3_34250 Physcomitrium patens HOM05D004448 ORTHO05D005919 3.8e-54 217.2 324 39.8
CANSAT56G3488 Cannabis sativa HOM05D004448 ORTHO05D005919 8.3e-49 199.5 243 45.7
Gohir.A08G245100 Gossypium hirsutum HOM05D004448 ORTHO05D005919 2.7e-47 194.5 375 37.1
SMO139G0129 Selaginella moellendorffii HOM05D006068 ORTHO05D007579 2.3e-46 191.4 333 36.9
Pp3c4_9790 Physcomitrium patens HOM05D004448 ORTHO05D005919 8.6e-46 189.5 328 36.6
CARHR270520 Cardamine hirsuta HOM05D004448 ORTHO05D005919 2.5e-45 188.0 325 39.7
Gorai.N024000 Gossypium raimondii HOM05D004448 ORTHO05D005919 9.8e-42 176.0 393 35.4
Pp3c27_3080 Physcomitrium patens HOM05D004448 ORTHO05D005919 2.2e-41 174.9 562 28.5
SGA_v2.0_scaffold62G21589 Striga asiatica HOM05D004448 ORTHO05D005919 2.2e-41 174.9 145 56.6
TPR.G35500 Trifolium pratense HOM05D004448 ORTHO05D005919 2.2e-41 174.9 146 58.9
CBR_g29538 Chara braunii HOM05D004448 ORTHO05D005919 4.1e-40 170.6 209 41.6
Pp3c15_21310 Physcomitrium patens HOM05D004448 ORTHO05D005919 7.0e-40 169.9 434 28.8
Atru.chr7.1554 Acer truncatum HOM05D004448 ORTHO05D005919 7.3e-37 159.8 264 38.6
RhsimUnG0032400 Rhododendron simsii HOM05D004448 ORTHO05D005919 2.1e-36 158.3 314 35.0
Pp3c16_1200 Physcomitrium patens HOM05D004448 ORTHO05D005919 2.8e-36 157.9 562 28.5
SMO157G0009 Selaginella moellendorffii HOM05D006068 ORTHO05D007579 3.1e-35 154.5 295 35.6
Hma1.2p1_0024F.1_g016070 Hydrangea macrophylla HOM05D004448 ORTHO05D005919 5.2e-35 153.7 96 71.9
Lalb_Chr24g0393831 Lupinus albus HOM05D004448 ORTHO05D005919 6.8e-35 153.3 149 55.0
TPR.G35590 Trifolium pratense HOM05D004448 ORTHO05D005919 4.9e-33 147.1 107 66.4
MD02G1075500 Malus domestica HOM05D004448 ORTHO05D005919 6.4e-33 146.7 246 37.8
AT5G56770 Arabidopsis thaliana HOM05D004448 ORTHO05D005919 1.5e-29 135.6 191 41.9
AL8G32610 Arabidopsis lyrata HOM05D004448 ORTHO05D005919 2.5e-29 134.8 169 42.6
Atru.chr7.1555 Acer truncatum HOM05D004448 ORTHO05D005919 9.9e-26 122.9 102 57.8
Gohir.D08G265900 Gossypium hirsutum HOM05D004448 ORTHO05D005919 2.9e-25 121.3 393 30.3
SalBow1G6253 Salvia bowleyana HOM05D004448 ORTHO05D005919 1.7e-22 112.1 138 44.2
Pp3c5_7060 Physcomitrium patens HOM05D004448 ORTHO05D005919 1.1e-19 102.8 383 28.5
Carub.0008s1725 Capsella rubella HOM05D004448 ORTHO05D005919 2.4e-19 101.7 187 35.8
Medtr6g092500 Medicago truncatula HOM05D004448 ORTHO05D005919 7.6e-18 96.7 120 44.2
Aa31LG3G540 Aethionema arabicum HOM05D001256 ORTHO05D001141 2.2e-17 95.1 436 24.8
Glyma.01G003300 Glycine max HOM05D004448 ORTHO05D005919 2.9e-17 94.7 98 53.1
CARHR233700 Cardamine hirsuta HOM05D004448 ORTHO05D015948 6.4e-17 93.6 415 24.6
FvH4_1g07231 Fragaria vesca HOM05D004448 ORTHO05D005919 7.1e-16 90.1 130 40.0
Thhalv10025245m.g Eutrema salsugineum HOM05D004448 ORTHO05D015948 1.0e-14 86.3 212 31.6
Medtr6g092480 Medicago truncatula HOM05D012533 ORTHO05D264910 3.9e-14 84.3 62 61.3
Pp3c9_23170 Physcomitrium patens HOM05D004448 ORTHO05D005919 5.1e-14 84.0 260 26.2
CBR_g20264 Chara braunii HOM05D000505 ORTHO05D000301 1.1e-13 82.8 138 34.1
AL7G26800 Arabidopsis lyrata HOM05D004448 ORTHO05D015948 4.3e-13 80.9 390 22.8
Carub.0007s1478 Capsella rubella HOM05D004448 ORTHO05D015948 3.6e-12 77.8 404 23.3
Sp7g24190 Schrenkiella parvula HOM05D004448 ORTHO05D015948 8.1e-12 76.6 330 25.2
AT4G26170 Arabidopsis thaliana HOM05D004448 ORTHO05D015948 9.0e-11 73.2 158 32.3
BcaNung02444 Brassica carinata HOM05D004448 ORTHO05D015948 3.9e-06 57.8 67 43.3
BraA01t01701Z Brassica rapa HOM05D004448 ORTHO05D015948 5.1e-06 57.4 220 23.6


User provided reference genes

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