Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv39081 Davidia involucrata HOM05D004146 ORTHO05D004843 5.5e-265 917.1 489 100.0
Dinv12116 Davidia involucrata HOM05D004146 ORTHO05D004843 5.8e-230 800.8 489 87.3
CSS0038119 Camellia sinensis var. sinensis HOM05D004146 ORTHO05D004843 4.3e-209 731.5 490 79.8
Rhsim13G0002300 Rhododendron simsii HOM05D004146 ORTHO05D004843 2.8e-208 728.8 490 79.2
Actinidia17925 Actinidia chinensis HOM05D004146 ORTHO05D004843 4.0e-207 724.9 490 79.6
CSS0021664 Camellia sinensis var. sinensis HOM05D004146 ORTHO05D004843 3.8e-205 718.4 490 79.0
CSS0047407 Camellia sinensis var. sinensis HOM05D004146 ORTHO05D004843 2.1e-203 712.6 490 78.0
vmacro02380 Vaccinium macrocarpon HOM05D004146 ORTHO05D004843 3.3e-201 705.3 496 77.2
QL12p018794 Quercus lobata HOM05D004146 ORTHO05D004843 4.9e-197 691.4 487 76.4
Thecc.01G319000 Theobroma cacao HOM05D004146 ORTHO05D004843 1.5e-193 679.9 488 75.6
Ciclev10020117m.g Citrus clementina HOM05D004146 ORTHO05D004843 3.3e-193 678.7 488 74.8
Gohir.D08G141300 Gossypium hirsutum HOM05D004146 ORTHO05D004843 4.3e-193 678.3 489 74.2
GSVIVG01028167001 Vitis vinifera HOM05D004146 ORTHO05D004843 1.6e-192 676.4 487 73.7
Gorai.004G145300 Gossypium raimondii HOM05D004146 ORTHO05D004843 1.8e-191 672.9 492 73.8
Gohir.A08G120400 Gossypium hirsutum HOM05D004146 ORTHO05D004843 5.3e-191 671.4 492 73.6
Manes.05G012300 Manihot esculenta HOM05D004146 ORTHO05D004843 6.9e-191 671.0 488 74.8
TAR633G1592 Trochodendron aralioides HOM05D004146 ORTHO05D004843 5.8e-190 667.9 489 72.4
Nn2g12083 Nelumbo nucifera HOM05D004146 ORTHO05D004843 2.2e-189 666.0 488 73.4
Cc01_g21680 Coffea canephora HOM05D004146 ORTHO05D004843 3.8e-189 665.2 501 71.3
Atru.chr5.940 Acer truncatum HOM05D004146 ORTHO05D004843 6.5e-189 664.5 488 73.4
Potri.014G117400 Populus trichocarpa HOM05D004146 ORTHO05D004843 1.1e-188 663.7 488 73.6
COL.COLO4_23187 Corchorus olitorius HOM05D004146 ORTHO05D004843 1.4e-188 663.3 484 73.6
Eucgr.K03560 Eucalyptus grandis HOM05D004146 ORTHO05D004843 5.5e-188 661.4 487 72.7
CiPaw.08G086700 Carya illinoinensis HOM05D004146 ORTHO05D004843 7.1e-188 661.0 487 73.5
Cpa.g.sc18.100 Carica papaya HOM05D004146 ORTHO05D004843 1.3e-186 656.8 488 73.6
Sabra14G0087100 Salix brachista HOM05D004146 ORTHO05D004843 1.3e-186 656.8 496 72.6
Sopen01g030990 Solanum pennellii HOM05D004146 ORTHO05D004843 1.8e-186 656.4 490 72.4
PGSC0003DMG400009054 Solanum tuberosum HOM05D004146 ORTHO05D004843 1.6e-184 649.8 490 71.8
TWI14G0575 Tripterygium wilfordii HOM05D004146 ORTHO05D004843 1.4e-183 646.7 488 72.1
TAR362G0580 Trochodendron aralioides HOM05D004146 ORTHO05D004843 2.6e-182 642.5 434 78.1
Lj1C336G0 Lonicera japonica HOM05D004146 ORTHO05D004843 4.5e-182 641.7 491 72.5
ECA236G0429 Erigeron canadensis HOM05D004146 ORTHO05D004843 1.3e-181 640.2 495 71.7
HanXRQChr06g0168071 Helianthus annuus HOM05D004146 ORTHO05D004843 3.8e-181 638.6 430 78.1
MSTRG.21711 Avicennia marina HOM05D004146 ORTHO05D004843 6.1e-179 631.3 489 69.5
CANSAT80G2876 Cannabis sativa HOM05D004146 ORTHO05D004843 1.3e-178 630.2 490 70.0
CAN.G293.4 Capsicum annuum HOM05D004146 ORTHO05D004843 3.9e-178 628.6 490 70.4
MD01G1004200 Malus domestica HOM05D004146 ORTHO05D004843 2.5e-177 625.9 488 70.9
TWI23G0480 Tripterygium wilfordii HOM05D004146 ORTHO05D004843 2.5e-177 625.9 488 69.7
Migut.D00054 Erythranthe guttata HOM05D004146 ORTHO05D004843 1.3e-176 623.6 489 69.5
Solyc01g079210.3 Solanum lycopersicum HOM05D004146 ORTHO05D004843 4.8e-176 621.7 426 76.8
CsaV3_7G030200 Cucumis sativus L. HOM05D004146 ORTHO05D004843 6.3e-176 621.3 487 69.2
Duzib211G0650 Durio zibethinus HOM05D004146 ORTHO05D004843 1.1e-175 620.5 488 70.9
AUR62024599 Chenopodium quinoa HOM05D004146 ORTHO05D004843 2.4e-175 619.4 489 68.7
PGR083G0515 Punica granatum HOM05D004146 ORTHO05D004843 5.3e-175 618.2 487 68.4
MELO3C015904.2 Cucumis melo HOM05D004146 ORTHO05D004843 2.0e-174 616.3 487 69.0
RcHm_v2.0_Chr3g0486991 Rosa chinensis HOM05D004146 ORTHO05D004843 2.6e-174 615.9 489 70.3
EL10As5g23605 Beta vulgaris HOM05D004146 ORTHO05D004843 7.7e-174 614.4 489 69.3
Phvul.001G214900 Phaseolus vulgaris HOM05D004146 ORTHO05D004843 1.0e-173 614.0 488 68.0
Sc24g0004180 Simmondsia chinensis HOM05D004146 ORTHO05D004843 1.3e-173 613.6 489 68.3
FAN23G2063 Fragaria x ananassa HOM05D004146 ORTHO05D004843 2.9e-173 612.5 489 69.1
Duzib211G0108 Durio zibethinus HOM05D004146 ORTHO05D004843 5.0e-173 611.7 454 72.7
SGA_v2.0_scaffold376G50305 Striga asiatica HOM05D004146 ORTHO05D004843 6.5e-173 611.3 490 67.6
FvH4_1g26770 Fragaria vesca HOM05D004146 ORTHO05D004843 8.5e-173 610.9 489 69.1
VMungo1383G2606 Vigna mungo HOM05D004146 ORTHO05D004843 5.5e-172 608.2 488 68.4
Peaxi162Scf00770g00128 Petunia axillaris HOM05D004146 ORTHO05D004843 7.2e-172 607.8 480 68.8
arahy.Tifrunner.gnm1.ann1.E9GQEB Arachis hypogaea HOM05D004146 ORTHO05D004843 3.6e-171 605.5 487 67.6
Actinidia21373 Actinidia chinensis HOM05D004146 ORTHO05D004843 4.6e-171 605.1 489 70.1
arahy.Tifrunner.gnm1.ann1.BI9FA3 Arachis hypogaea HOM05D004146 ORTHO05D004843 4.6e-171 605.1 487 67.6
FAN28G1198 Fragaria x ananassa HOM05D004146 ORTHO05D004843 4.6e-171 605.1 502 67.7
Aqoxy2G00845 Aquilegia oxysepala HOM05D004146 ORTHO05D004843 2.3e-170 602.8 487 68.0
FAN19G1384 Fragaria x ananassa HOM05D004146 ORTHO05D004843 1.7e-168 596.7 499 67.1
Sed0005540 Sechium edule HOM05D004146 ORTHO05D004843 3.7e-168 595.5 488 67.2
Prupe.3G006800 Prunus persica HOM05D004146 ORTHO05D004843 1.1e-167 594.0 394 78.4
PSO210G5259 Papaver somniferum HOM05D004146 ORTHO05D004843 2.4e-167 592.8 484 65.7
MD15G1342700 Malus domestica HOM05D004146 ORTHO05D004843 6.9e-167 591.3 492 68.5
Nitab4.5_0000222g0120 Nicotiana tabacum HOM05D004146 ORTHO05D004843 3.4e-166 589.0 416 75.5
Lj5g0012537 Lotus japonicus HOM05D004146 ORTHO05D004843 7.7e-166 587.8 488 67.2
Glyma.03G221500 Glycine max HOM05D004146 ORTHO05D004843 1.0e-165 587.4 494 65.8
Glyma.19G218500 Glycine max HOM05D004146 ORTHO05D004843 1.7e-165 586.6 487 66.1
HPP92_024389 Vanilla planifolia HOM05D004146 ORTHO05D004843 3.8e-165 585.5 489 65.0
ClCG09G004890 Citrullus lanatus HOM05D004146 ORTHO05D004843 1.9e-164 583.2 513 64.3
Hma1.2p1_0965F.1_g242130 Hydrangea macrophylla HOM05D004146 ORTHO05D004843 4.2e-164 582.0 496 67.7
Psat3g019080 Pisum sativum HOM05D004146 ORTHO05D004843 7.2e-164 581.3 430 71.6
ATR0564G334 Amborella trichopoda HOM05D004146 ORTHO05D004843 1.2e-163 580.5 491 64.0
THA.LOC104802140 Tarenaya hassleriana HOM05D004146 ORTHO05D004843 1.6e-163 580.1 440 69.3
PSO761G0652 Papaver somniferum HOM05D004146 ORTHO05D004843 2.7e-163 579.3 488 64.8
Lsat_1_v5_gn_0_33621 Lactuca sativa HOM05D004146 ORTHO05D004843 4.7e-163 578.6 492 67.9
arahy.Tifrunner.gnm1.ann1.F4ZKGQ Arachis hypogaea HOM05D004146 ORTHO05D004843 6.1e-163 578.2 428 71.5
Ca_09227_v3 Cicer arietinum L. HOM05D004146 ORTHO05D004843 6.1e-163 578.2 451 69.0
arahy.Tifrunner.gnm1.ann1.TWIF5Z Arachis hypogaea HOM05D004146 ORTHO05D004843 7.9e-163 577.8 428 71.5
Lalb_Chr04g0260041 Lupinus albus HOM05D004146 ORTHO05D004843 7.9e-163 577.8 487 66.5
Lj1g0001654 Lotus japonicus HOM05D004146 ORTHO05D004843 1.0e-162 577.4 426 71.6
Lalb_Chr18g0046551 Lupinus albus HOM05D004146 ORTHO05D004843 1.8e-162 576.6 429 72.5
Aqoxy4G02480 Aquilegia oxysepala HOM05D004146 ORTHO05D004843 6.7e-162 574.7 489 65.4
TPR.G4037 Trifolium pratense HOM05D004146 ORTHO05D004843 6.7e-162 574.7 430 70.9
Thhalv10001452m.g Eutrema salsugineum HOM05D004146 ORTHO05D004843 1.1e-161 573.9 487 64.9
CDE10G1142 Ceratophyllum demersum HOM05D004146 ORTHO05D004843 1.5e-161 573.5 487 63.4
Medtr7g109870 Medicago truncatula HOM05D004146 ORTHO05D004843 1.3e-160 570.5 433 70.9
Lalb_Chr06g0167021 Lupinus albus HOM05D004146 ORTHO05D004843 5.3e-159 565.1 487 65.3
CARHR142600 Cardamine hirsuta HOM05D004146 ORTHO05D004843 2.0e-158 563.1 487 63.9
Aa31LG1G28520 Aethionema arabicum HOM05D004146 ORTHO05D004843 7.7e-158 561.2 487 63.4
AL4G46770 Arabidopsis lyrata HOM05D004146 ORTHO05D004843 1.0e-157 560.8 487 64.3
AT2G47210 Arabidopsis thaliana HOM05D004146 ORTHO05D004843 3.8e-157 558.9 487 63.4
TPR.G38442 Trifolium pratense HOM05D004146 ORTHO05D004843 8.5e-157 557.8 430 69.3
BcaB06g29458 Brassica carinata HOM05D004146 ORTHO05D004843 1.6e-155 553.5 490 63.7
BcaB02g08794 Brassica carinata HOM05D004146 ORTHO05D004843 3.6e-155 552.4 487 62.6
MBI19_g36749_MAGBIO Magnolia biondii HOM05D004146 ORTHO05D004843 3.6e-155 552.4 489 63.8
C04p00700 Brassica napus HOM05D004146 ORTHO05D004843 3.0e-154 549.3 426 68.1
BolC4t21705H Brassica oleracea HOM05D004146 ORTHO05D004843 3.3e-153 545.8 426 67.6
Sp4g29200 Schrenkiella parvula HOM05D004146 ORTHO05D004843 5.7e-153 545.0 426 68.1
BcaC02g12586 Brassica carinata HOM05D004146 ORTHO05D004843 7.5e-153 544.7 426 67.4
BraA05t19061Z Brassica rapa HOM05D004146 ORTHO05D004843 2.8e-152 542.7 494 61.5
Os05g0540800 Oryza sativa ssp. japonica HOM05D004146 ORTHO05D004843 2.8e-152 542.7 489 61.8
Zm00001eb235700 Zea mays HOM05D004146 ORTHO05D004843 7.0e-151 538.1 489 61.3
C04p72630 Brassica napus HOM05D004146 ORTHO05D004843 1.6e-150 537.0 491 62.5
BraSC79t46677Z Brassica rapa HOM05D004146 ORTHO05D004843 1.6e-150 537.0 490 61.8
BcaC02g06965 Brassica carinata HOM05D004146 ORTHO05D004843 3.5e-150 535.8 491 62.3
Carub.0004s2994 Capsella rubella HOM05D004146 ORTHO05D004843 1.3e-149 533.9 401 70.1
unitig_736.g22928 Utricularia gibba HOM05D004146 ORTHO05D004843 1.2e-147 527.3 494 60.5
Carub.0004s2995 Capsella rubella HOM05D004146 ORTHO05D004843 2.1e-147 526.6 426 66.4
A04p34860 Brassica napus HOM05D004146 ORTHO05D004843 3.0e-146 522.7 516 58.7
AUR62011755 Chenopodium quinoa HOM05D004146 ORTHO05D004843 1.4e-143 513.8 449 63.7
DCAR_018267 Daucus carota HOM05D004146 ORTHO05D004843 3.1e-143 512.7 415 68.0
Medtr1g086590 Medicago truncatula HOM05D004146 ORTHO05D004843 4.1e-143 512.3 432 65.5
Hund09662 Selenicereus undatus HOM05D004146 ORTHO05D004843 2.2e-141 506.5 415 66.0
Nitab4.5_0010752g0020 Nicotiana tabacum HOM05D004146 ORTHO05D004843 1.9e-140 503.4 373 73.2
A05p00620 Brassica napus HOM05D004146 ORTHO05D004843 6.1e-139 498.4 370 70.3
Ca_10265_v3 Cicer arietinum L. HOM05D004146 ORTHO05D004843 4.1e-135 485.7 512 55.5
Dinv33143 Davidia involucrata HOM05D004146 ORTHO05D004843 7.0e-135 485.0 487 59.3
Haze_05083 Corylus avellana HOM05D004146 ORTHO05D004843 1.2e-129 467.6 515 55.9
TPR.G31750 Trifolium pratense HOM05D004146 ORTHO05D004843 4.4e-129 465.7 429 61.1
Oeu044739.1 Olea europaea HOM05D004146 ORTHO05D004843 5.7e-129 465.3 398 63.6
SEGI_29063 Sequoiadendron giganteum HOM05D004146 ORTHO05D004843 2.7e-126 456.4 503 51.7
Duzib138G1200 Durio zibethinus HOM05D004146 ORTHO05D004843 1.3e-125 454.1 488 56.4
Lj1A14G70 Lonicera japonica HOM05D004146 ORTHO05D004843 4.3e-124 449.1 344 70.1
CiPaw.07G120600 Carya illinoinensis HOM05D004146 ORTHO05D004843 6.4e-120 435.3 343 69.4
Mapoly0165s0024 Marchantia polymorpha HOM05D004146 ORTHO05D004843 3.0e-117 426.4 510 48.6
AagrBONN_evm.TU.Sc2ySwM_228.1245 Anthoceros agrestis HOM05D004146 ORTHO05D004843 8.9e-114 414.8 537 46.0
Pp3c1_35180 Physcomitrium patens HOM05D004146 ORTHO05D004843 4.0e-106 389.4 537 44.1
SMO244G0096 Selaginella moellendorffii HOM05D004146 ORTHO05D004843 4.0e-106 389.4 489 47.6
SHI33153 Sapria himalayana HOM05D004146 ORTHO05D004843 2.2e-96 357.1 239 74.5
BcaC02g09008 Brassica carinata HOM05D004146 ORTHO05D004843 7.1e-95 352.1 502 46.8
Psat6g160560 Pisum sativum HOM05D004146 ORTHO05D004843 2.3e-93 347.1 402 52.0
BolC4t25516H Brassica oleracea HOM05D004146 ORTHO05D004843 2.4e-87 327.0 345 54.8
CBR_g3593 Chara braunii HOM05D004146 ORTHO05D004843 1.3e-85 321.2 561 40.5
Psat6g160640 Pisum sativum HOM05D004146 ORTHO05D004843 2.7e-78 297.0 358 51.1
Mapoly0092s0082 Marchantia polymorpha HOM05D004146 ORTHO05D004843 6.2e-75 285.8 523 37.7
Pp3c2_4040 Physcomitrium patens HOM05D004146 ORTHO05D004843 8.1e-75 285.4 392 44.6
BolC4t25515H Brassica oleracea HOM05D004146 ORTHO05D004843 1.2e-57 228.4 174 67.2
PRCOL_00004506 Prasinoderma coloniale HOM05D004146 ORTHO05D004843 3.2e-55 220.3 374 39.8
C04p39500 Brassica napus HOM05D004146 ORTHO05D004843 4.2e-55 219.9 178 62.9
SalBow3G0988 Salvia bowleyana HOM05D004146 ORTHO05D004843 1.0e-53 215.3 128 82.0
C04p39490 Brassica napus HOM05D004146 ORTHO05D004843 3.0e-53 213.8 179 62.0
Lj1g0004326 Lotus japonicus HOM05D004146 ORTHO05D004843 5.7e-52 209.5 258 51.9
BolC4t28751H Brassica oleracea HOM05D004146 ORTHO05D004843 1.8e-50 204.5 228 56.6
AagrBONN_evm.TU.Sc2ySwM_228.1331 Anthoceros agrestis HOM05D004146 ORTHO05D004843 5.3e-50 203.0 394 36.5
BcaC02g09009 Brassica carinata HOM05D004146 ORTHO05D004843 9.1e-50 202.2 172 61.6
Actinidia20972 Actinidia chinensis HOM05D004146 ORTHO05D004843 7.9e-46 189.1 235 49.8
Cre03.g144907 Chlamydomonas reinhardtii HOM05D004146 ORTHO05D004843 3.3e-44 183.7 270 40.7
Lj1A14G71 Lonicera japonica HOM05D004146 ORTHO05D004843 1.8e-37 161.4 169 59.8
Oeu062253.1 Olea europaea HOM05D004146 ORTHO05D004843 1.7e-32 144.8 141 53.2
MCO05G453 Micromonas commoda HOM05D004146 ORTHO05D004843 1.1e-31 142.1 267 34.8
Psat6g160680 Pisum sativum HOM05D004146 ORTHO05D004843 5.5e-31 139.8 109 60.6
Lsat_1_v5_gn_2_7680 Lactuca sativa HOM05D004146 ORTHO05D004843 2.8e-27 127.5 131 63.4
Lsat_1_v5_gn_8_147141 Lactuca sativa HOM05D004146 ORTHO05D004843 1.8e-26 124.8 142 55.6
BcaC02g12616 Brassica carinata HOM05D004146 ORTHO05D004843 2.0e-25 121.3 172 45.3
Lsat_1_v5_gn_3_136441 Lactuca sativa HOM05D004146 ORTHO05D004843 4.5e-25 120.2 160 51.2
TPR.G18531 Trifolium pratense HOM05D004146 ORTHO05D004843 1.0e-24 119.0 91 62.6
Sabra02G0047100 Salix brachista HOM05D004503 ORTHO05D005460 3.8e-24 117.1 175 50.3
GSVIVG01028163001 Vitis vinifera HOM05D004146 ORTHO05D004843 4.7e-22 110.2 118 55.1
Cfa022451 Carpinus fangiana HOM05D004146 ORTHO05D004843 2.2e-19 101.3 302 26.8
BolC4t28750H Brassica oleracea HOM05D004146 ORTHO05D004843 2.7e-17 94.4 200 36.0
CAN.G111.15 Capsicum annuum HOM05D004146 ORTHO05D004843 5.0e-16 90.1 68 64.7
RcHm_v2.0_Chr2g0114941 Rosa chinensis HOM05D004146 ORTHO05D004843 4.3e-15 87.0 99 48.5
HPP92_024388 Vanilla planifolia HOM05D002498 ORTHO05D008129 5.6e-15 86.7 54 75.9
C04p39510 Brassica napus HOM05D004146 ORTHO05D004843 9.2e-10 69.3 129 43.4
VMungo1383G1227 Vigna mungo HOM05D004146 ORTHO05D000001 1.3e-08 65.5 39 82.1
Lsat_1_v5_gn_4_71221 Lactuca sativa HOM05D002292 ORTHO05D003256 3.0e-08 64.3 42 81.0
RcHm_v2.0_Chr6g0284911 Rosa chinensis HOM05D004215 ORTHO05D005293 3.0e-08 64.3 100 40.0
CSS0026841 Camellia sinensis var. sinensis HOM05D004146 ORTHO05D004843 2.5e-07 61.2 32 93.8
DCAR_017471 Daucus carota HOM05D004146 ORTHO05D004843 3.3e-07 60.8 42 69.0
Oeu042819.1 Olea europaea HOM05D004146 ORTHO05D004843 3.3e-07 60.8 40 77.5
Actinidia22797 Actinidia chinensis HOM05D004146 ORTHO05D004843 2.1e-06 58.2 108 41.7


User provided reference genes

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