Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv38052 Davidia involucrata HOM05D003909 ORTHO05D004478 2.2e-201 705.7 429 100.0
Dinv30518 Davidia involucrata HOM05D003909 ORTHO05D004478 9.7e-165 583.9 435 77.5
Lj9P507T43 Lonicera japonica HOM05D003909 ORTHO05D004478 1.3e-137 493.8 430 66.0
Hma1.2p1_0682F.1_g202710 Hydrangea macrophylla HOM05D003909 ORTHO05D004478 1.7e-137 493.4 436 70.6
Actinidia01799 Actinidia chinensis HOM05D001315 ORTHO05D001618 2.3e-137 493.0 430 70.5
CSS0044508 Camellia sinensis var. sinensis HOM05D003909 ORTHO05D004478 4.3e-136 488.8 424 69.1
Actinidia32764 Actinidia chinensis HOM05D003909 ORTHO05D004478 7.0e-131 471.5 433 70.0
CSS0004276 Camellia sinensis var. sinensis HOM05D003909 ORTHO05D004478 3.5e-130 469.2 431 67.3
Lj5C61T11 Lonicera japonica HOM05D003909 ORTHO05D004478 4.0e-126 455.7 436 61.9
QL05p024883 Quercus lobata HOM05D003909 ORTHO05D004478 1.5e-125 453.8 436 62.6
QL05p024997 Quercus lobata HOM05D003909 ORTHO05D004478 1.5e-125 453.8 436 62.6
Actinidia08971 Actinidia chinensis HOM05D003909 ORTHO05D004478 3.4e-125 452.6 430 64.9
TAR626G0719 Trochodendron aralioides HOM05D003909 ORTHO05D004478 1.7e-124 450.3 439 60.8
Rhsim12G0197200 Rhododendron simsii HOM05D003909 ORTHO05D004478 2.9e-124 449.5 431 63.6
Hma1.2p1_0323F.1_g125230 Hydrangea macrophylla HOM05D003909 ORTHO05D004478 1.9e-123 446.8 433 63.7
Manes.11G048200 Manihot esculenta HOM05D003909 ORTHO05D004478 3.2e-123 446.0 451 62.1
TAR383G0140 Trochodendron aralioides HOM05D003909 ORTHO05D004478 1.2e-119 434.1 445 58.7
vmacro18921 Vaccinium macrocarpon HOM05D003909 ORTHO05D004478 4.7e-119 432.2 425 60.7
Prupe.3G072500 Prunus persica HOM05D003909 ORTHO05D004478 8.1e-119 431.4 439 61.7
Duzib160G0939 Durio zibethinus HOM05D003909 ORTHO05D004478 3.1e-118 429.5 463 57.2
CiPaw.02G151900 Carya illinoinensis HOM05D003909 ORTHO05D004478 2.0e-117 426.8 431 59.4
Manes.04G122500 Manihot esculenta HOM05D003909 ORTHO05D004478 2.0e-117 426.8 446 65.7
Peaxi162Scf00015g10039 Petunia axillaris HOM05D003909 ORTHO05D004478 7.5e-117 424.9 455 56.3
TWI75G1291 Tripterygium wilfordii HOM05D003909 ORTHO05D004478 1.7e-116 423.7 441 61.2
Duzib192G0576 Durio zibethinus HOM05D003909 ORTHO05D004478 2.2e-116 423.3 460 57.4
Cc04_g03530 Coffea canephora HOM05D003909 ORTHO05D004478 4.9e-116 422.2 433 58.7
Thecc.06G085100 Theobroma cacao HOM05D003909 ORTHO05D004478 6.4e-116 421.8 466 55.8
CiPaw.01G240200 Carya illinoinensis HOM05D003909 ORTHO05D004478 8.3e-116 421.4 434 58.8
Atru.chr1.3248 Acer truncatum HOM05D003909 ORTHO05D004478 2.1e-114 416.8 461 59.2
Nitab4.5_0006801g0020 Nicotiana tabacum HOM05D003909 ORTHO05D004478 1.7e-113 413.7 451 59.0
Haze_16447 Corylus avellana HOM05D003909 ORTHO05D004478 5.1e-113 412.1 450 61.3
CAN.G438.59 Capsicum annuum HOM05D003909 ORTHO05D004478 8.6e-113 411.4 452 60.6
Aqoxy7G01805 Aquilegia oxysepala HOM05D003909 ORTHO05D004478 5.6e-112 408.7 433 56.4
Sabra01G0147800 Salix brachista HOM05D003909 ORTHO05D004478 5.6e-112 408.7 496 51.0
Potri.003G056400 Populus trichocarpa HOM05D003909 ORTHO05D004478 2.1e-111 406.8 529 50.7
TWI18G1146 Tripterygium wilfordii HOM05D003909 ORTHO05D004478 3.6e-111 406.0 464 61.4
TAR636G1173 Trochodendron aralioides HOM05D003909 ORTHO05D004478 4.7e-111 405.6 439 57.9
Potri.001G179100 Populus trichocarpa HOM05D003909 ORTHO05D004478 1.1e-110 404.4 502 55.8
Nitab4.5_0000671g0020 Nicotiana tabacum HOM05D003909 ORTHO05D004478 1.8e-110 403.7 453 60.0
COL.COLO4_30356 Corchorus olitorius HOM05D003909 ORTHO05D004478 2.4e-110 403.3 480 57.1
Solyc03g120280.1 Solanum lycopersicum HOM05D003909 ORTHO05D004478 2.4e-110 403.3 450 55.1
Cfa002057 Carpinus fangiana HOM05D003909 ORTHO05D004478 3.1e-110 402.9 438 60.5
Nitab4.5_0002327g0010 Nicotiana tabacum HOM05D003909 ORTHO05D004478 5.2e-110 402.1 449 55.2
MD09G1214400 Malus domestica HOM05D003909 ORTHO05D004478 1.2e-109 401.0 444 57.2
CAN.G395.16 Capsicum annuum HOM05D003909 ORTHO05D004478 1.5e-109 400.6 448 54.7
Sopen03g039170 Solanum pennellii HOM05D003909 ORTHO05D004478 1.5e-109 400.6 450 53.6
MSTRG.4728 Avicennia marina HOM05D003909 ORTHO05D004478 2.6e-109 399.8 443 58.7
MD17G1196800 Malus domestica HOM05D003909 ORTHO05D004478 5.8e-109 398.7 449 58.4
Nitab4.5_0000351g0150 Nicotiana tabacum HOM05D003909 ORTHO05D004478 9.9e-109 397.9 456 54.4
Eucgr.F02948 Eucalyptus grandis HOM05D003909 ORTHO05D004478 2.2e-108 396.7 437 56.3
Sabra03G0031800 Salix brachista HOM05D003909 ORTHO05D004478 4.9e-108 395.6 502 51.0
Rhsim08G0220400 Rhododendron simsii HOM05D003909 ORTHO05D004478 8.4e-108 394.8 396 61.4
Oeu033481.1 Olea europaea HOM05D003909 ORTHO05D004478 1.9e-107 393.7 468 59.2
MSTRG.22695 Avicennia marina HOM05D003909 ORTHO05D004478 3.2e-107 392.9 500 50.4
Ciclev10025626m.g Citrus clementina HOM05D003909 ORTHO05D004478 1.6e-106 390.6 452 60.8
Glyma.15G013600 Glycine max HOM05D003909 ORTHO05D004478 6.0e-106 388.7 466 59.7
PGSC0003DMG400002641 Solanum tuberosum HOM05D003909 ORTHO05D004478 6.0e-106 388.7 448 53.8
GSVIVG01017123001 Vitis vinifera HOM05D003909 ORTHO05D004478 3.0e-105 386.3 429 55.0
FvH4_6g31000 Fragaria vesca HOM05D003909 ORTHO05D004478 4.3e-104 382.5 453 53.2
Lsat_1_v5_gn_1_34841 Lactuca sativa HOM05D003909 ORTHO05D004478 9.6e-104 381.3 438 58.4
Sopen06g025020 Solanum pennellii HOM05D003909 ORTHO05D004478 1.4e-102 377.5 451 53.4
CsaV3_7G033090 Cucumis sativus L. HOM05D003909 ORTHO05D004478 3.4e-101 372.9 485 54.4
FAN05G4496 Fragaria x ananassa HOM05D003909 ORTHO05D004478 7.6e-101 371.7 444 58.6
MELO3C024224.2 Cucumis melo HOM05D003909 ORTHO05D004478 2.2e-100 370.2 486 55.6
ECA247G1970 Erigeron canadensis HOM05D003909 ORTHO05D004478 4.9e-100 369.0 431 59.2
Sed0003438 Sechium edule HOM05D003909 ORTHO05D004478 4.9e-100 369.0 486 54.9
Migut.I00858 Erythranthe guttata HOM05D003909 ORTHO05D004478 6.4e-100 368.6 457 56.5
Ah.01g006030 Amaranthus hybridus HOM05D003909 ORTHO05D004478 8.4e-100 368.2 456 53.5
Solyc06g066740.3 Solanum lycopersicum HOM05D003909 ORTHO05D004478 2.4e-99 366.7 455 54.3
arahy.Tifrunner.gnm1.ann1.63P8XR Arachis hypogaea HOM05D003909 ORTHO05D004478 3.2e-99 366.3 460 58.7
FAN02G1452 Fragaria x ananassa HOM05D003909 ORTHO05D004478 3.2e-99 366.3 445 58.2
Ah.01g021220 Amaranthus hybridus HOM05D003909 ORTHO05D004478 5.4e-99 365.5 450 55.6
VMungo1080G0623 Vigna mungo HOM05D003909 ORTHO05D004478 1.6e-98 364.0 466 55.4
HanXRQChr10g0314961 Helianthus annuus HOM05D003909 ORTHO05D004478 2.7e-98 363.2 452 60.6
EL10Ac9g21982 Beta vulgaris HOM05D003909 ORTHO05D004478 3.5e-98 362.8 449 58.1
Glyma.13G360300 Glycine max HOM05D003909 ORTHO05D004478 3.5e-98 362.8 467 58.0
Lj3g0018129 Lotus japonicus HOM05D003909 ORTHO05D004478 4.6e-98 362.5 454 55.5
PSO782G4639 Papaver somniferum HOM05D003909 ORTHO05D004478 4.6e-98 362.5 441 58.0
Cpa.g.c31444.1 Carica papaya HOM05D003909 ORTHO05D004478 1.0e-97 361.3 480 49.2
AUR62016436 Chenopodium quinoa HOM05D003909 ORTHO05D004478 1.0e-97 361.3 468 51.1
ClCG09G002210 Citrullus lanatus HOM05D003909 ORTHO05D004478 1.0e-97 361.3 505 47.9
Sc15g0001250 Simmondsia chinensis HOM05D003909 ORTHO05D004478 1.0e-97 361.3 457 53.0
PSO063G3399 Papaver somniferum HOM05D003909 ORTHO05D004478 1.7e-97 360.5 438 56.8
Gorai.002G058700 Gossypium raimondii HOM05D003909 ORTHO05D004478 2.3e-97 360.1 459 51.0
MBI04_g18158_MAGBIO Magnolia biondii HOM05D003909 ORTHO05D004478 3.0e-97 359.8 450 53.6
Gohir.A02G122200 Gossypium hirsutum HOM05D003909 ORTHO05D004478 3.9e-97 359.4 459 57.5
Aa31LG8G3120 Aethionema arabicum HOM05D003909 ORTHO05D004478 3.3e-96 356.3 467 49.3
Phvul.005G172100 Phaseolus vulgaris HOM05D003909 ORTHO05D004478 3.3e-96 356.3 474 52.3
AUR62011621 Chenopodium quinoa HOM05D003909 ORTHO05D004478 4.3e-96 355.9 437 53.1
PGR102G2609 Punica granatum HOM05D003909 ORTHO05D004478 4.3e-96 355.9 466 54.5
PGSC0003DMG400016510 Solanum tuberosum HOM05D003909 ORTHO05D004478 5.6e-96 355.5 460 49.6
ATR1120G115 Amborella trichopoda HOM05D003909 ORTHO05D004478 9.6e-96 354.8 459 53.6
Gohir.D03G074300 Gossypium hirsutum HOM05D003909 ORTHO05D004478 1.1e-94 351.3 463 52.9
HanXRQChr02g0032691 Helianthus annuus HOM05D003909 ORTHO05D004478 5.8e-93 345.5 446 58.5
CANSAT56G2173 Cannabis sativa HOM05D003909 ORTHO05D004478 4.9e-92 342.4 437 53.5
Nn8g39239 Nelumbo nucifera HOM05D003909 ORTHO05D004478 4.9e-92 342.4 238 76.5
THA.LOC104810518 Tarenaya hassleriana HOM05D003909 ORTHO05D004478 8.4e-92 341.7 445 55.3
Medtr4g011930 Medicago truncatula HOM05D003909 ORTHO05D004478 1.9e-91 340.5 454 52.9
DCAR_026310 Daucus carota HOM05D003909 ORTHO05D004478 4.2e-91 339.3 472 55.1
Thhalv10020773m.g Eutrema salsugineum HOM05D003909 ORTHO05D004478 1.2e-90 337.8 453 49.4
Carub.0003s1570 Capsella rubella HOM05D003909 ORTHO05D004478 1.6e-90 337.4 451 52.5
Sed0010123 Sechium edule HOM05D003909 ORTHO05D004478 2.7e-90 336.7 494 51.8
TPR.G24152 Trifolium pratense HOM05D003909 ORTHO05D004478 2.7e-90 336.7 442 58.4
CARHR091100 Cardamine hirsuta HOM05D003909 ORTHO05D004478 3.5e-90 336.3 464 47.2
Sp3g14320 Schrenkiella parvula HOM05D003909 ORTHO05D004478 1.8e-89 334.0 433 49.7
Ca_20399_v3 Cicer arietinum L. HOM05D003909 ORTHO05D004478 2.3e-89 333.6 457 51.9
Nn2g11803 Nelumbo nucifera HOM05D003909 ORTHO05D004478 6.7e-89 332.0 243 73.7
Carub.0001s4138 Capsella rubella HOM05D003909 ORTHO05D004478 8.7e-89 331.6 452 48.2
AL3G28620 Arabidopsis lyrata HOM05D003909 ORTHO05D004478 1.9e-88 330.5 487 48.3
SEGI_39159 Sequoiadendron giganteum HOM05D003909 ORTHO05D004478 3.3e-88 329.7 471 47.1
AT1G52380 Arabidopsis thaliana HOM05D003909 ORTHO05D004478 1.6e-87 327.4 453 47.9
Lalb_Chr24g0395791 Lupinus albus HOM05D003909 ORTHO05D004478 1.6e-87 327.4 469 53.5
BcaB02g10997 Brassica carinata HOM05D003909 ORTHO05D004478 3.7e-87 326.2 437 49.9
Lalb_Chr22g0351201 Lupinus albus HOM05D003909 ORTHO05D004478 6.2e-87 325.5 447 54.6
SGA_v2.0_scaffold5G02599 Striga asiatica HOM05D003909 ORTHO05D004478 6.2e-87 325.5 458 52.8
unitig_21.g20517 Utricularia gibba HOM05D003909 ORTHO05D004478 4.5e-85 319.3 451 46.6
AT3G15970 Arabidopsis thaliana HOM05D003909 ORTHO05D004478 1.0e-84 318.2 474 46.8
CARHR042530 Cardamine hirsuta HOM05D003909 ORTHO05D004478 1.3e-84 317.8 434 49.3
AL1G60630 Arabidopsis lyrata HOM05D003909 ORTHO05D004478 3.8e-84 316.2 453 47.2
SalBow2G1612 Salvia bowleyana HOM05D003909 ORTHO05D004478 6.5e-84 315.5 373 52.5
BraA06t23402Z Brassica rapa HOM05D003909 ORTHO05D004478 5.5e-83 312.4 432 48.6
A05p19040 Brassica napus HOM05D003909 ORTHO05D004478 1.6e-82 310.8 448 46.9
BcaC08g43991 Brassica carinata HOM05D003909 ORTHO05D004478 2.1e-82 310.5 444 46.8
C06p13960 Brassica napus HOM05D003909 ORTHO05D004478 2.1e-82 310.5 444 46.8
BolC6t35869H Brassica oleracea HOM05D003909 ORTHO05D004478 2.1e-82 310.5 443 49.2
BolC6t36574H Brassica oleracea HOM05D001315 ORTHO05D001618 2.1e-82 310.5 444 46.8
Psat7g253000 Pisum sativum HOM05D003909 ORTHO05D004478 2.1e-82 310.5 427 47.8
MBI01_g16632_MAGBIO Magnolia biondii HOM05D003909 ORTHO05D004478 2.7e-82 310.1 415 50.8
Sp1g38990 Schrenkiella parvula HOM05D003909 ORTHO05D004478 2.7e-82 310.1 453 51.9
BraA05t20804Z Brassica rapa HOM05D003909 ORTHO05D004478 3.5e-82 309.7 448 46.7
THA.LOC104818004 Tarenaya hassleriana HOM05D003909 ORTHO05D004478 1.0e-81 308.1 446 49.6
C06p07830 Brassica napus HOM05D003909 ORTHO05D004478 1.8e-81 307.4 443 48.8
A06p01850 Brassica napus HOM05D003909 ORTHO05D004478 3.0e-81 306.6 444 49.8
Lalb_Chr14g0373481 Lupinus albus HOM05D003909 ORTHO05D004478 6.7e-81 305.4 465 54.0
HanXRQChr04g0096531 Helianthus annuus HOM05D003909 ORTHO05D004478 2.5e-80 303.5 480 55.2
Thhalv10011504m.g Eutrema salsugineum HOM05D003909 ORTHO05D004478 1.4e-78 297.7 452 46.0
Aa31LG10G2540 Aethionema arabicum HOM05D003909 ORTHO05D004478 1.4e-75 287.7 454 45.6
RcHm_v2.0_Chr2g0137631 Rosa chinensis HOM05D003909 ORTHO05D004478 3.2e-75 286.6 427 53.4
Os05g0349500 Oryza sativa ssp. japonica HOM05D003909 ORTHO05D004478 9.3e-75 285.0 490 42.2
HPP92_019977 Vanilla planifolia HOM05D003909 ORTHO05D004478 8.2e-71 271.9 464 43.3
Zm00001eb360880 Zea mays HOM05D003909 ORTHO05D004478 1.8e-65 254.2 452 45.6
BcaC08g43418 Brassica carinata HOM05D003909 ORTHO05D004478 8.8e-65 251.9 432 48.8
SEGI_02359 Sequoiadendron giganteum HOM05D003909 ORTHO05D004478 2.2e-60 237.3 467 41.3
BcaC01g03847 Brassica carinata HOM05D003909 ORTHO05D004478 9.4e-59 231.9 433 43.9
C03p47980 Brassica napus HOM05D003909 ORTHO05D004478 9.4e-59 231.9 433 43.9
MBI04_g40091_MAGBIO Magnolia biondii HOM05D003909 ORTHO05D004478 1.2e-58 231.5 348 48.3
BolC3t17078H Brassica oleracea HOM05D003909 ORTHO05D004478 2.7e-58 230.3 433 43.6
Mapoly0073s0079 Marchantia polymorpha HOM05D003909 ORTHO05D004478 3.6e-58 229.9 485 38.8
SHI24405 Sapria himalayana HOM05D003909 ORTHO05D004478 7.4e-56 222.2 433 42.7
Zm00001eb155830 Zea mays HOM05D003909 ORTHO05D004478 9.7e-56 221.9 452 38.1
CDE06G1609 Ceratophyllum demersum HOM05D003909 ORTHO05D004478 3.9e-49 199.9 354 42.7
BcaC08g43420 Brassica carinata HOM05D003909 ORTHO05D004478 1.1e-48 198.4 153 69.9
AagrBONN_evm.TU.Sc2ySwM_228.3069 Anthoceros agrestis HOM05D003909 ORTHO05D004478 3.7e-47 193.4 465 43.0
unitig_744.g24336 Utricularia gibba HOM05D003909 ORTHO05D004478 3.2e-43 180.3 349 39.8
MBI04_g43353_MAGBIO Magnolia biondii HOM05D003909 ORTHO05D004478 2.1e-42 177.6 169 61.5
SMO351G0411 Selaginella moellendorffii HOM05D003848 ORTHO05D004616 4.0e-41 173.3 436 36.7
Pp3c3_6080 Physcomitrium patens HOM05D003909 ORTHO05D004478 2.0e-40 171.0 460 38.9
Actinidia14363 Actinidia chinensis HOM05D003909 ORTHO05D004478 1.1e-30 138.7 86 77.9
A06p01830 Brassica napus HOM05D003909 ORTHO05D004478 2.9e-28 130.6 103 68.9
BcaC01g01324 Brassica carinata HOM05D003909 ORTHO05D004478 6.1e-26 122.9 133 56.4
CBR_g38869 Chara braunii HOM05D003909 ORTHO05D004478 1.2e-24 118.6 131 45.8
C03p90640 Brassica napus HOM05D003909 ORTHO05D004478 2.9e-23 114.0 127 54.3
BolC3t21386H Brassica oleracea HOM05D001315 ORTHO05D001618 2.9e-23 114.0 127 54.3
BraA06t23400Z Brassica rapa HOM05D003909 ORTHO05D004478 2.3e-20 104.4 89 65.2
MCO12G345 Micromonas commoda HOM05D003909 ORTHO05D004478 1.0e-17 95.5 112 42.0
Psat4g143640 Pisum sativum HOM05D002956 ORTHO05D008031 3.1e-17 94.0 104 55.8
C06p07870 Brassica napus HOM05D003909 ORTHO05D004478 6.8e-17 92.8 105 48.6
BolC6t35871H Brassica oleracea HOM05D003909 ORTHO05D004478 6.8e-17 92.8 105 48.6
arahy.Tifrunner.gnm1.ann1.HH7TIC Arachis hypogaea HOM05D003909 ORTHO05D004478 7.5e-16 89.4 98 62.2
A03p39600 Brassica napus HOM05D003909 ORTHO05D004478 1.3e-15 88.6 173 39.3
Medtr1g112060 Medicago truncatula HOM05D003909 ORTHO05D004478 1.7e-15 88.2 90 58.9
unitig_744.g24337 Utricularia gibba HOM05D003909 ORTHO05D004478 6.4e-15 86.3 67 61.2
HPP92_020042 Vanilla planifolia HOM05D003909 ORTHO05D004478 1.3e-12 78.6 131 44.3
PRCOL_00002651 Prasinoderma coloniale HOM05D003909 ORTHO05D004478 6.6e-12 76.3 194 32.0
Cre15.g641000 Chlamydomonas reinhardtii HOM05D003909 ORTHO05D004478 2.1e-10 71.2 87 43.7
MBI04_g43354_MAGBIO Magnolia biondii HOM05D003909 ORTHO05D004478 4.0e-09 67.0 42 83.3
FAN09G3670 Fragaria x ananassa HOM05D003909 ORTHO05D004478 4.9e-07 60.1 66 53.0
Cfa024721 Carpinus fangiana HOM05D003909 ORTHO05D121609 1.1e-06 58.9 132 37.1
CSS0029378 Camellia sinensis var. sinensis HOM05D002258 ORTHO05D002539 9.2e-06 55.8 110 36.4
CSS0036996 Camellia sinensis var. sinensis HOM05D002258 ORTHO05D002539 9.2e-06 55.8 110 36.4


User provided reference genes

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