Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv33143 Davidia involucrata HOM05D004146 ORTHO05D004843 2.9e-216 755.0 388 100.0
Dinv39081 Davidia involucrata HOM05D004146 ORTHO05D004843 1.1e-135 487.3 487 59.3
Dinv12116 Davidia involucrata HOM05D004146 ORTHO05D004843 1.9e-127 459.9 487 56.9
Rhsim13G0002300 Rhododendron simsii HOM05D004146 ORTHO05D004843 7.3e-119 431.4 488 53.9
CSS0038119 Camellia sinensis var. sinensis HOM05D004146 ORTHO05D004843 1.2e-116 424.1 488 53.5
Actinidia17925 Actinidia chinensis HOM05D004146 ORTHO05D004843 1.4e-114 417.2 488 53.5
CSS0021664 Camellia sinensis var. sinensis HOM05D004146 ORTHO05D004843 1.6e-113 413.7 480 53.5
CSS0047407 Camellia sinensis var. sinensis HOM05D004146 ORTHO05D004843 1.7e-112 410.2 480 52.9
vmacro02380 Vaccinium macrocarpon HOM05D004146 ORTHO05D004843 1.5e-111 407.1 494 52.2
QL12p018794 Quercus lobata HOM05D004146 ORTHO05D004843 1.7e-107 393.7 487 50.9
TAR633G1592 Trochodendron aralioides HOM05D004146 ORTHO05D004843 1.3e-104 384.0 487 49.5
Duzib211G0650 Durio zibethinus HOM05D004146 ORTHO05D004843 2.1e-102 376.7 467 50.3
Thecc.01G319000 Theobroma cacao HOM05D004146 ORTHO05D004843 6.2e-102 375.2 488 49.6
GSVIVG01028167001 Vitis vinifera HOM05D004146 ORTHO05D004843 3.1e-101 372.9 487 47.4
Ciclev10020117m.g Citrus clementina HOM05D004146 ORTHO05D004843 1.2e-100 370.9 488 47.7
Manes.05G012300 Manihot esculenta HOM05D004146 ORTHO05D004843 3.4e-100 369.4 488 49.2
CiPaw.08G086700 Carya illinoinensis HOM05D004146 ORTHO05D004843 2.9e-99 366.3 487 48.9
COL.COLO4_23187 Corchorus olitorius HOM05D004146 ORTHO05D004843 4.9e-99 365.5 484 48.3
TWI14G0575 Tripterygium wilfordii HOM05D004146 ORTHO05D004843 4.9e-99 365.5 487 48.3
Gohir.D08G141300 Gossypium hirsutum HOM05D004146 ORTHO05D004843 6.4e-99 365.2 489 48.3
Nn2g12083 Nelumbo nucifera HOM05D004146 ORTHO05D004843 1.4e-98 364.0 489 47.2
Gorai.004G145300 Gossypium raimondii HOM05D004146 ORTHO05D004843 1.9e-98 363.6 492 48.2
Gohir.A08G120400 Gossypium hirsutum HOM05D004146 ORTHO05D004843 5.4e-98 362.1 492 48.0
Atru.chr5.940 Acer truncatum HOM05D004146 ORTHO05D004843 2.1e-97 360.1 488 46.7
Potri.014G117400 Populus trichocarpa HOM05D004146 ORTHO05D004843 3.0e-96 356.3 488 48.0
Lj1C336G0 Lonicera japonica HOM05D004146 ORTHO05D004843 1.1e-95 354.4 469 48.2
Eucgr.K03560 Eucalyptus grandis HOM05D004146 ORTHO05D004843 2.5e-95 353.2 486 46.3
Cpa.g.sc18.100 Carica papaya HOM05D004146 ORTHO05D004843 5.6e-95 352.1 480 47.9
ECA236G0429 Erigeron canadensis HOM05D004146 ORTHO05D004843 2.1e-94 350.1 494 46.8
Sopen01g030990 Solanum pennellii HOM05D004146 ORTHO05D004843 2.8e-94 349.7 486 45.7
Cc01_g21680 Coffea canephora HOM05D004146 ORTHO05D004843 3.6e-94 349.4 497 44.5
TAR362G0580 Trochodendron aralioides HOM05D004146 ORTHO05D004843 6.2e-94 348.6 437 50.1
Sabra14G0087100 Salix brachista HOM05D004146 ORTHO05D004843 8.1e-94 348.2 496 47.4
PGSC0003DMG400009054 Solanum tuberosum HOM05D004146 ORTHO05D004843 3.1e-93 346.3 486 45.5
CsaV3_7G030200 Cucumis sativus L. HOM05D004146 ORTHO05D004843 1.5e-92 344.0 479 46.8
HanXRQChr06g0168071 Helianthus annuus HOM05D004146 ORTHO05D004843 1.5e-92 344.0 440 47.0
MELO3C015904.2 Cucumis melo HOM05D004146 ORTHO05D004843 5.8e-92 342.0 479 46.8
Actinidia21373 Actinidia chinensis HOM05D004146 ORTHO05D004843 7.6e-92 341.7 482 47.5
MD01G1004200 Malus domestica HOM05D004146 ORTHO05D004843 1.1e-90 337.8 479 46.3
MSTRG.21711 Avicennia marina HOM05D004146 ORTHO05D004843 1.4e-90 337.4 487 43.9
TWI23G0480 Tripterygium wilfordii HOM05D004146 ORTHO05D004843 2.4e-90 336.7 488 45.9
CANSAT80G2876 Cannabis sativa HOM05D004146 ORTHO05D004843 1.2e-89 334.3 481 45.3
Duzib138G1200 Durio zibethinus HOM05D004146 ORTHO05D004843 3.5e-89 332.8 422 49.8
Aqoxy2G00845 Aquilegia oxysepala HOM05D004146 ORTHO05D004843 1.0e-88 331.3 487 45.2
CAN.G293.4 Capsicum annuum HOM05D004146 ORTHO05D004843 2.3e-88 330.1 483 44.7
Hma1.2p1_0965F.1_g242130 Hydrangea macrophylla HOM05D004146 ORTHO05D004843 1.1e-87 327.8 491 47.3
Solyc01g079210.3 Solanum lycopersicum HOM05D004146 ORTHO05D004843 1.9e-87 327.0 423 47.3
Haze_05083 Corylus avellana HOM05D004146 ORTHO05D004843 3.3e-87 326.2 386 51.3
RcHm_v2.0_Chr3g0486991 Rosa chinensis HOM05D004146 ORTHO05D004843 3.3e-87 326.2 479 45.5
Sed0005540 Sechium edule HOM05D004146 ORTHO05D004843 5.6e-87 325.5 479 44.9
Sc24g0004180 Simmondsia chinensis HOM05D004146 ORTHO05D004843 4.8e-86 322.4 487 43.9
arahy.Tifrunner.gnm1.ann1.E9GQEB Arachis hypogaea HOM05D004146 ORTHO05D004843 1.1e-85 321.2 480 45.0
PGR083G0515 Punica granatum HOM05D004146 ORTHO05D004843 1.1e-85 321.2 486 44.0
arahy.Tifrunner.gnm1.ann1.BI9FA3 Arachis hypogaea HOM05D004146 ORTHO05D004843 3.1e-85 319.7 480 44.8
FAN23G2063 Fragaria x ananassa HOM05D004146 ORTHO05D004843 4.0e-85 319.3 480 44.6
MD15G1342700 Malus domestica HOM05D004146 ORTHO05D004843 4.0e-85 319.3 483 45.1
Hund09662 Selenicereus undatus HOM05D004146 ORTHO05D004843 4.0e-85 319.3 373 50.9
Migut.D00054 Erythranthe guttata HOM05D004146 ORTHO05D004843 9.0e-85 318.2 487 42.9
FvH4_1g26770 Fragaria vesca HOM05D004146 ORTHO05D004843 1.2e-84 317.8 480 44.8
Peaxi162Scf00770g00128 Petunia axillaris HOM05D004146 ORTHO05D004843 2.0e-84 317.0 478 43.5
ClCG09G004890 Citrullus lanatus HOM05D004146 ORTHO05D004843 2.6e-84 316.6 505 44.0
Phvul.001G214900 Phaseolus vulgaris HOM05D004146 ORTHO05D004843 3.4e-84 316.2 487 43.9
AUR62011755 Chenopodium quinoa HOM05D004146 ORTHO05D004843 5.8e-84 315.5 383 48.8
Lsat_1_v5_gn_0_33621 Lactuca sativa HOM05D004146 ORTHO05D004843 1.7e-83 313.9 485 43.7
Prupe.3G006800 Prunus persica HOM05D004146 ORTHO05D004843 1.7e-83 313.9 356 52.5
EL10As5g23605 Beta vulgaris HOM05D004146 ORTHO05D004843 2.9e-83 313.2 484 43.0
VMungo1383G2606 Vigna mungo HOM05D004146 ORTHO05D004843 3.8e-83 312.8 485 43.7
Aqoxy4G02480 Aquilegia oxysepala HOM05D004146 ORTHO05D004843 4.9e-83 312.4 489 44.4
FAN28G1198 Fragaria x ananassa HOM05D004146 ORTHO05D004843 1.4e-82 310.8 493 43.8
SGA_v2.0_scaffold376G50305 Striga asiatica HOM05D004146 ORTHO05D004843 2.5e-82 310.1 486 41.4
FAN19G1384 Fragaria x ananassa HOM05D004146 ORTHO05D004843 3.2e-82 309.7 490 43.5
Duzib211G0108 Durio zibethinus HOM05D004146 ORTHO05D004843 7.1e-82 308.5 444 45.3
AUR62024599 Chenopodium quinoa HOM05D004146 ORTHO05D004843 3.5e-81 306.2 483 41.8
Nitab4.5_0000222g0120 Nicotiana tabacum HOM05D004146 ORTHO05D004843 1.0e-80 304.7 414 46.6
CDE10G1142 Ceratophyllum demersum HOM05D004146 ORTHO05D004843 2.5e-79 300.1 484 41.5
Lj5g0012537 Lotus japonicus HOM05D004146 ORTHO05D004843 3.3e-79 299.7 488 43.0
Glyma.03G221500 Glycine max HOM05D004146 ORTHO05D004843 5.7e-79 298.9 492 42.9
PSO210G5259 Papaver somniferum HOM05D004146 ORTHO05D004843 7.4e-79 298.5 484 41.1
TPR.G4037 Trifolium pratense HOM05D004146 ORTHO05D004843 2.8e-78 296.6 430 46.3
Ca_09227_v3 Cicer arietinum L. HOM05D004146 ORTHO05D004843 1.4e-77 294.3 448 45.1
Psat3g019080 Pisum sativum HOM05D004146 ORTHO05D004843 2.4e-77 293.5 420 44.8
Glyma.19G218500 Glycine max HOM05D004146 ORTHO05D004843 3.1e-77 293.1 479 42.4
HPP92_024389 Vanilla planifolia HOM05D004146 ORTHO05D004843 3.1e-77 293.1 488 42.0
arahy.Tifrunner.gnm1.ann1.F4ZKGQ Arachis hypogaea HOM05D004146 ORTHO05D004843 1.5e-76 290.8 418 46.4
PSO761G0652 Papaver somniferum HOM05D004146 ORTHO05D004843 2.0e-76 290.4 488 40.8
ATR0564G334 Amborella trichopoda HOM05D004146 ORTHO05D004843 2.6e-76 290.0 488 41.0
arahy.Tifrunner.gnm1.ann1.TWIF5Z Arachis hypogaea HOM05D004146 ORTHO05D004843 3.4e-76 289.7 418 46.2
Medtr7g109870 Medicago truncatula HOM05D004146 ORTHO05D004843 3.4e-76 289.7 423 45.4
THA.LOC104802140 Tarenaya hassleriana HOM05D004146 ORTHO05D004843 4.5e-76 289.3 493 40.6
Lj1g0001654 Lotus japonicus HOM05D004146 ORTHO05D004843 3.8e-75 286.2 426 43.7
Lalb_Chr04g0260041 Lupinus albus HOM05D004146 ORTHO05D004843 3.8e-75 286.2 487 41.9
Lalb_Chr18g0046551 Lupinus albus HOM05D004146 ORTHO05D004843 6.5e-75 285.4 480 41.7
Aa31LG1G28520 Aethionema arabicum HOM05D004146 ORTHO05D004843 8.4e-75 285.0 479 41.3
Lalb_Chr06g0167021 Lupinus albus HOM05D004146 ORTHO05D004843 1.1e-74 284.6 486 41.6
Os05g0540800 Oryza sativa ssp. japonica HOM05D004146 ORTHO05D004843 1.9e-74 283.9 488 39.8
Zm00001eb235700 Zea mays HOM05D004146 ORTHO05D004843 3.5e-73 279.6 488 39.8
TPR.G38442 Trifolium pratense HOM05D004146 ORTHO05D004843 8.7e-72 275.0 422 44.3
Thhalv10001452m.g Eutrema salsugineum HOM05D004146 ORTHO05D004843 1.5e-71 274.2 479 40.1
CARHR142600 Cardamine hirsuta HOM05D004146 ORTHO05D004843 3.3e-71 273.1 479 40.1
AL4G46770 Arabidopsis lyrata HOM05D004146 ORTHO05D004843 9.7e-71 271.6 479 40.5
MBI19_g36749_MAGBIO Magnolia biondii HOM05D004146 ORTHO05D004843 1.3e-70 271.2 488 40.4
AT2G47210 Arabidopsis thaliana HOM05D004146 ORTHO05D004843 1.6e-70 270.8 479 40.3
unitig_736.g22928 Utricularia gibba HOM05D004146 ORTHO05D004843 1.1e-69 268.1 490 38.0
Ca_10265_v3 Cicer arietinum L. HOM05D004146 ORTHO05D004843 3.1e-69 266.5 488 38.7
BcaB02g08794 Brassica carinata HOM05D004146 ORTHO05D004843 1.3e-67 261.2 479 38.8
Sp4g29200 Schrenkiella parvula HOM05D004146 ORTHO05D004843 3.8e-67 259.6 479 38.8
C04p00700 Brassica napus HOM05D004146 ORTHO05D004843 5.0e-67 259.2 479 38.8
Carub.0004s2994 Capsella rubella HOM05D004146 ORTHO05D004843 8.5e-67 258.5 462 39.8
DCAR_018267 Daucus carota HOM05D004146 ORTHO05D004843 8.5e-67 258.5 368 46.7
BcaC02g12586 Brassica carinata HOM05D004146 ORTHO05D004843 1.1e-66 258.1 479 38.6
BolC4t21705H Brassica oleracea HOM05D004146 ORTHO05D004843 1.1e-66 258.1 479 38.6
Oeu044739.1 Olea europaea HOM05D004146 ORTHO05D004843 2.5e-66 256.9 299 50.2
BcaB06g29458 Brassica carinata HOM05D004146 ORTHO05D004843 1.2e-65 254.6 482 38.6
CiPaw.07G120600 Carya illinoinensis HOM05D004146 ORTHO05D004843 1.2e-65 254.6 340 47.1
Nitab4.5_0010752g0020 Nicotiana tabacum HOM05D004146 ORTHO05D004843 5.1e-64 249.2 371 43.9
Carub.0004s2995 Capsella rubella HOM05D004146 ORTHO05D004843 6.7e-64 248.8 465 39.8
Medtr1g086590 Medicago truncatula HOM05D004146 ORTHO05D004843 1.5e-63 247.7 426 41.1
BraA05t19061Z Brassica rapa HOM05D004146 ORTHO05D004843 5.7e-63 245.7 486 37.9
BcaC02g06965 Brassica carinata HOM05D004146 ORTHO05D004843 9.7e-63 245.0 483 38.1
C04p72630 Brassica napus HOM05D004146 ORTHO05D004843 9.7e-63 245.0 483 38.1
A05p00620 Brassica napus HOM05D004146 ORTHO05D004843 2.2e-62 243.8 342 44.2
BraSC79t46677Z Brassica rapa HOM05D004146 ORTHO05D004843 4.8e-62 242.7 479 37.8
Lj1A14G70 Lonicera japonica HOM05D004146 ORTHO05D004843 5.9e-60 235.7 341 44.3
A04p34860 Brassica napus HOM05D004146 ORTHO05D004843 9.4e-58 228.4 505 35.8
SEGI_29063 Sequoiadendron giganteum HOM05D004146 ORTHO05D004843 1.1e-53 214.9 503 33.0
Mapoly0165s0024 Marchantia polymorpha HOM05D004146 ORTHO05D004843 6.7e-48 195.7 514 33.1
TPR.G31750 Trifolium pratense HOM05D004146 ORTHO05D004843 1.7e-46 191.0 386 37.8
SHI33153 Sapria himalayana HOM05D004146 ORTHO05D004843 2.2e-46 190.7 242 48.8
BolC4t25516H Brassica oleracea HOM05D004146 ORTHO05D004843 2.0e-44 184.1 347 38.9
SalBow3G0988 Salvia bowleyana HOM05D004146 ORTHO05D004843 1.0e-43 181.8 128 70.3
Psat6g160560 Pisum sativum HOM05D004146 ORTHO05D004843 1.0e-40 171.8 320 39.4
BcaC02g09008 Brassica carinata HOM05D004146 ORTHO05D004843 3.0e-40 170.2 470 33.4
AagrBONN_evm.TU.Sc2ySwM_228.1245 Anthoceros agrestis HOM05D004146 ORTHO05D004843 2.0e-39 167.5 540 28.3
Pp3c1_35180 Physcomitrium patens HOM05D004146 ORTHO05D004843 2.7e-36 157.1 277 36.5
SMO244G0096 Selaginella moellendorffii HOM05D004146 ORTHO05D004843 2.7e-36 157.1 485 31.3
C04p39500 Brassica napus HOM05D004146 ORTHO05D004843 9.1e-29 132.1 131 53.4
BolC4t25515H Brassica oleracea HOM05D004146 ORTHO05D004843 7.7e-28 129.0 128 53.1
CBR_g3593 Chara braunii HOM05D004146 ORTHO05D004843 2.9e-27 127.1 255 35.3
Psat6g160640 Pisum sativum HOM05D004146 ORTHO05D004843 2.9e-27 127.1 350 33.4
C04p39490 Brassica napus HOM05D004146 ORTHO05D004843 6.6e-27 125.9 132 52.3
Psat6g160680 Pisum sativum HOM05D004146 ORTHO05D004843 2.1e-25 120.9 109 54.1
BcaC02g09009 Brassica carinata HOM05D004146 ORTHO05D004843 3.6e-25 120.2 128 50.8
CAN.G111.15 Capsicum annuum HOM05D004146 ORTHO05D004843 3.0e-24 117.1 188 43.1
Pp3c2_4040 Physcomitrium patens HOM05D004146 ORTHO05D004843 7.5e-23 112.5 271 32.8
Mapoly0092s0082 Marchantia polymorpha HOM05D004146 ORTHO05D004843 4.9e-22 109.8 285 32.6
Actinidia20972 Actinidia chinensis HOM05D004146 ORTHO05D004843 7.0e-21 105.9 218 37.6
Sabra02G0047100 Salix brachista HOM05D004503 ORTHO05D005460 1.1e-18 98.6 101 58.4
TPR.G18531 Trifolium pratense HOM05D004146 ORTHO05D004843 1.4e-16 91.7 91 50.5
BolC4t28751H Brassica oleracea HOM05D004146 ORTHO05D004843 6.8e-16 89.4 257 34.2
Lj1A14G71 Lonicera japonica HOM05D004146 ORTHO05D004843 1.3e-14 85.1 102 51.0
GSVIVG01028163001 Vitis vinifera HOM05D004146 ORTHO05D004843 1.2e-12 78.6 100 48.0
Lj1g0004326 Lotus japonicus HOM05D004146 ORTHO05D004843 2.0e-12 77.8 195 34.9
Cre03.g144907 Chlamydomonas reinhardtii HOM05D004146 ORTHO05D004843 2.3e-11 74.3 147 34.7
Oeu062253.1 Olea europaea HOM05D004146 ORTHO05D004843 1.5e-10 71.6 85 47.1
RcHm_v2.0_Chr2g0114941 Rosa chinensis HOM05D004146 ORTHO05D004843 5.6e-10 69.7 62 51.6
PRCOL_00004506 Prasinoderma coloniale HOM05D004146 ORTHO05D004843 6.2e-09 66.2 372 23.7
RcHm_v2.0_Chr6g0284911 Rosa chinensis HOM05D004215 ORTHO05D005293 1.8e-08 64.7 96 39.6
HPP92_024388 Vanilla planifolia HOM05D002498 ORTHO05D008129 1.2e-07 62.0 81 46.9
Lsat_1_v5_gn_8_147141 Lactuca sativa HOM05D004146 ORTHO05D004843 2.0e-07 61.2 115 35.7
Lsat_1_v5_gn_3_136441 Lactuca sativa HOM05D004146 ORTHO05D004843 3.4e-07 60.5 131 33.6
Lsat_1_v5_gn_2_7680 Lactuca sativa HOM05D004146 ORTHO05D004843 1.3e-06 58.5 119 40.3


User provided reference genes

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