Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv32057 Davidia involucrata HOM05D004944 ORTHO05D005989 0.0e+00 1331.2 676 100.0
Hma1.2p1_0184F.1_g081120 Hydrangea macrophylla HOM05D004944 ORTHO05D005989 1.6e-307 1058.9 675 80.6
Actinidia06272 Actinidia chinensis HOM05D004944 ORTHO05D005989 1.4e-298 1029.2 673 78.6
GSVIVG01000850001 Vitis vinifera HOM05D004944 ORTHO05D005989 9.3e-287 989.9 675 75.3
Atru.chr11.2502 Acer truncatum HOM05D004944 ORTHO05D005989 1.6e-283 979.2 678 74.8
Ciclev10030882m.g Citrus clementina HOM05D004944 ORTHO05D005989 1.9e-271 939.1 679 72.0
QL04p013327 Quercus lobata HOM05D004944 ORTHO05D005989 4.2e-271 937.9 675 71.4
TAR636G1724 Trochodendron aralioides HOM05D004944 ORTHO05D005989 1.9e-268 929.1 676 71.7
Potri.003G202300 Populus trichocarpa HOM05D004944 ORTHO05D005989 2.9e-264 915.2 675 70.8
MD02G1296200 Malus domestica HOM05D004944 ORTHO05D005989 5.5e-263 911.0 678 69.9
CiPaw.13G010200 Carya illinoinensis HOM05D004944 ORTHO05D005989 1.5e-260 902.9 687 69.6
Haze_03113 Corylus avellana HOM05D004944 ORTHO05D005989 1.9e-260 902.5 707 67.6
TWI15G1108 Tripterygium wilfordii HOM05D004944 ORTHO05D005989 1.9e-260 902.5 677 69.1
Sabra03G0149500 Salix brachista HOM05D004944 ORTHO05D005989 4.5e-257 891.3 715 66.3
Lj3g0016020 Lotus japonicus HOM05D004944 ORTHO05D005989 2.9e-256 888.6 674 69.1
Medtr3g022850 Medicago truncatula HOM05D004944 ORTHO05D005989 9.4e-255 883.6 675 67.6
Rhsim07G0062200 Rhododendron simsii HOM05D004944 ORTHO05D005989 1.5e-252 876.3 837 58.5
Cfa010847 Carpinus fangiana HOM05D004944 ORTHO05D005989 1.7e-251 872.8 671 68.0
Sed0005559 Sechium edule HOM05D004944 ORTHO05D005989 4.8e-251 871.3 669 66.1
VMungo1080G1012 Vigna mungo HOM05D004944 ORTHO05D005989 4.8e-251 871.3 675 67.7
Glyma.11G150100 Glycine max HOM05D004944 ORTHO05D005989 3.1e-250 868.6 677 66.8
Migut.N01817 Erythranthe guttata HOM05D004944 ORTHO05D005989 1.3e-248 863.2 697 64.4
MELO3C012446.2 Cucumis melo HOM05D004944 ORTHO05D005989 1.1e-247 860.1 676 64.3
Cc02_g29470 Coffea canephora HOM05D004944 ORTHO05D005989 2.7e-246 855.5 696 64.8
Prupe.2G028500 Prunus persica HOM05D004944 ORTHO05D005989 3.0e-245 852.0 678 67.3
RcHm_v2.0_Chr1g0319541 Rosa chinensis HOM05D004944 ORTHO05D005989 6.7e-245 850.9 677 66.0
Duzib128G1953 Durio zibethinus HOM05D004944 ORTHO05D005989 2.8e-243 845.5 675 64.9
CANSAT80G2771 Cannabis sativa HOM05D004944 ORTHO05D005989 4.1e-242 841.6 673 64.5
Gorai.013G015500 Gossypium raimondii HOM05D004944 ORTHO05D005989 7.7e-241 837.4 674 64.2
SGA_v2.0_scaffold5G02935 Striga asiatica HOM05D004944 ORTHO05D005989 1.7e-240 836.3 678 64.3
Thecc.10G005400 Theobroma cacao HOM05D004944 ORTHO05D005989 8.5e-240 833.9 678 64.5
Gohir.D13G014300 Gossypium hirsutum HOM05D004944 ORTHO05D005989 3.6e-238 828.6 674 63.8
TPR.G18800 Trifolium pratense HOM05D004944 ORTHO05D005989 2.3e-237 825.9 675 63.7
FvH4_7g02220 Fragaria vesca HOM05D004944 ORTHO05D005989 8.8e-237 823.9 677 64.3
FAN06G2455 Fragaria x ananassa HOM05D004944 ORTHO05D005989 1.7e-235 819.7 677 64.0
FAN03G3505 Fragaria x ananassa HOM05D004944 ORTHO05D005989 1.2e-233 813.5 698 62.5
Sopen01g030310 Solanum pennellii HOM05D004944 ORTHO05D005989 4.5e-233 811.6 702 61.1
arahy.Tifrunner.gnm1.ann1.L5CKR4 Arachis hypogaea HOM05D004944 ORTHO05D005989 8.5e-232 807.4 677 64.4
CAN.G410.46 Capsicum annuum HOM05D004944 ORTHO05D005989 3.2e-231 805.4 707 60.7
arahy.Tifrunner.gnm1.ann1.YV81B1 Arachis hypogaea HOM05D004944 ORTHO05D005989 5.5e-231 804.7 701 62.6
FAN01G0470 Fragaria x ananassa HOM05D004944 ORTHO05D005989 6.1e-230 801.2 729 59.7
Eucgr.G03259 Eucalyptus grandis HOM05D004944 ORTHO05D005989 6.8e-229 797.7 669 61.1
ClCG05G020810 Citrullus lanatus HOM05D004944 ORTHO05D005989 8.8e-229 797.3 706 59.9
Nn7g36468 Nelumbo nucifera HOM05D004944 ORTHO05D005989 7.5e-228 794.3 679 63.3
HanXRQChr05g0145061 Helianthus annuus HOM05D004944 ORTHO05D005989 1.4e-226 790.0 674 61.7
Lalb_Chr04g0263921 Lupinus albus HOM05D004944 ORTHO05D005989 1.0e-224 783.9 606 68.2
Lsat_1_v5_gn_9_47141 Lactuca sativa HOM05D004944 ORTHO05D005989 1.6e-222 776.5 660 61.8
SalBow2G1212 Salvia bowleyana HOM05D004944 ORTHO05D005989 1.6e-222 776.5 746 57.2
THA.LOC104819120 Tarenaya hassleriana HOM05D004944 ORTHO05D005989 1.0e-221 773.9 684 59.1
Cfa010848 Carpinus fangiana HOM05D004944 ORTHO05D005989 3.0e-221 772.3 613 66.4
Aqoxy1G00293 Aquilegia oxysepala HOM05D004944 ORTHO05D005989 2.6e-220 769.2 677 60.4
PGR031G0610 Punica granatum HOM05D004944 ORTHO05D005989 2.8e-219 765.8 677 62.0
COL.COLO4_25841 Corchorus olitorius HOM05D004944 ORTHO05D005989 1.7e-216 756.5 640 62.7
Cpa.g.sc197.13 Carica papaya HOM05D004944 ORTHO05D005989 9.8e-212 740.7 676 59.5
AT4G30870 Arabidopsis thaliana HOM05D004944 ORTHO05D005989 1.0e-208 730.7 678 57.5
AL7G21230 Arabidopsis lyrata HOM05D004944 ORTHO05D005989 3.3e-207 725.7 678 57.5
Sp6g04870 Schrenkiella parvula HOM05D004944 ORTHO05D005989 1.4e-205 720.3 683 56.7
Thhalv10024629m.g Eutrema salsugineum HOM05D004944 ORTHO05D005989 1.8e-205 719.9 685 57.8
BcaB01g01761 Brassica carinata HOM05D004944 ORTHO05D005989 3.7e-203 712.2 677 56.6
A09p26720 Brassica napus HOM05D004944 ORTHO05D005989 6.4e-203 711.4 678 57.4
BraA09t38244Z Brassica rapa HOM05D004944 ORTHO05D005989 2.4e-202 709.5 678 57.1
MBI17_g24522_MAGBIO Magnolia biondii HOM05D004944 ORTHO05D005989 3.2e-202 709.1 604 62.7
Aa31LG2G19510 Aethionema arabicum HOM05D004944 ORTHO05D005989 3.5e-201 705.7 689 55.4
Carub.0007s0968 Capsella rubella HOM05D004944 ORTHO05D005989 1.3e-200 703.7 678 56.0
ECA232G0518 Erigeron canadensis HOM05D004944 ORTHO05D005989 5.0e-200 701.8 603 61.9
Nitab4.5_0006307g0060 Nicotiana tabacum HOM05D004944 ORTHO05D005989 1.5e-199 700.3 689 56.2
BcaC04g21249 Brassica carinata HOM05D004944 ORTHO05D005989 4.3e-199 698.7 678 56.3
C09p33850 Brassica napus HOM05D004944 ORTHO05D005989 4.3e-199 698.7 678 56.3
BolC9t56223H Brassica oleracea HOM05D004944 ORTHO05D005989 4.3e-199 698.7 678 56.3
DCAR_009210 Daucus carota HOM05D004944 ORTHO05D005989 5.2e-197 691.8 678 55.9
PSO782G0837 Papaver somniferum HOM05D004944 ORTHO05D005989 2.6e-196 689.5 683 56.8
CARHR238770 Cardamine hirsuta HOM05D004944 ORTHO05D005989 3.4e-196 689.1 675 55.1
Phvul.005G033000 Phaseolus vulgaris HOM05D004944 ORTHO05D005989 2.8e-190 669.5 676 57.1
AUR62026814 Chenopodium quinoa HOM05D004944 ORTHO05D005989 7.1e-186 654.8 676 52.2
MD07G1077800 Malus domestica HOM05D004944 ORTHO05D005989 9.2e-186 654.4 605 59.0
Nitab4.5_0000316g0180 Nicotiana tabacum HOM05D004944 ORTHO05D005989 4.6e-185 652.1 584 59.8
PSO339G0509 Papaver somniferum HOM05D004944 ORTHO05D005989 1.7e-184 650.2 674 54.0
Hund15708 Selenicereus undatus HOM05D004944 ORTHO05D005989 5.6e-183 645.2 676 53.1
PSO384G2132 Papaver somniferum HOM05D004944 ORTHO05D005989 7.3e-183 644.8 672 53.9
Manes.04G164000 Manihot esculenta HOM05D004944 ORTHO05D005989 8.9e-181 637.9 533 65.3
HPP92_001459 Vanilla planifolia HOM05D004944 ORTHO05D005989 5.1e-176 622.1 677 52.4
CsaV3_5G036480 Cucumis sativus L. HOM05D004944 ORTHO05D005989 7.6e-172 608.2 500 62.2
PSO135G0630 Papaver somniferum HOM05D004944 ORTHO05D005989 9.9e-172 607.8 682 50.6
CDE01G0132 Ceratophyllum demersum HOM05D004944 ORTHO05D005989 4.9e-171 605.5 650 51.7
Carub.0007s3598 Capsella rubella HOM05D004944 ORTHO05D005989 9.6e-167 591.3 675 51.1
Thhalv10024809m.g Eutrema salsugineum HOM05D004944 ORTHO05D005989 8.1e-166 588.2 675 50.4
SEGI_11905 Sequoiadendron giganteum HOM05D004944 ORTHO05D005989 3.8e-163 579.3 685 47.4
Gohir.A13G013200 Gossypium hirsutum HOM05D004944 ORTHO05D005989 8.4e-163 578.2 506 59.1
RcHm_v2.0_Chr3g0488831 Rosa chinensis HOM05D004944 ORTHO05D005989 3.2e-162 576.2 586 54.9
EL10Ac2g02867 Beta vulgaris HOM05D004944 ORTHO05D005989 3.0e-160 569.7 672 48.7
Solyc01g068340.3 Solanum lycopersicum HOM05D004944 ORTHO05D005989 2.8e-158 563.1 532 57.1
AUR62037239 Chenopodium quinoa HOM05D004944 ORTHO05D005989 6.9e-157 558.5 672 47.6
Prupe.7G020900 Prunus persica HOM05D004944 ORTHO05D005989 1.9e-154 550.4 601 52.1
Psat5g213680 Pisum sativum HOM05D004944 ORTHO05D005989 1.8e-141 507.3 462 59.1
Pp3c16_12330 Physcomitrium patens HOM05D004944 ORTHO05D005989 8.8e-128 461.8 681 41.4
unitig_744.g24021 Utricularia gibba HOM05D004944 ORTHO05D005989 2.6e-127 460.3 776 39.9
AT5G39770 Arabidopsis thaliana HOM05D004944 ORTHO05D005989 1.5e-124 451.1 654 45.4
vmacro13722 Vaccinium macrocarpon HOM05D004944 ORTHO05D005989 6.5e-123 445.7 461 55.5
SMO337G0105 Selaginella moellendorffii HOM05D004944 ORTHO05D005989 8.5e-123 445.3 681 39.5
Os01g0948100 Oryza sativa ssp. japonica HOM05D004944 ORTHO05D005989 2.0e-119 434.1 559 46.2
Mapoly0005s0161 Marchantia polymorpha HOM05D004944 ORTHO05D005989 1.1e-117 428.3 693 38.4
AagrBONN_evm.TU.Sc2ySwM_228.3522 Anthoceros agrestis HOM05D004944 ORTHO05D005989 1.3e-115 421.4 679 37.4
Sc10g0004230 Simmondsia chinensis HOM05D004944 ORTHO05D005989 1.1e-109 401.7 467 50.3
Peaxi162Scf00309g00015 Petunia axillaris HOM05D004944 ORTHO05D005989 7.7e-108 395.6 557 42.9
MBI17_g33308_MAGBIO Magnolia biondii HOM05D004944 ORTHO05D005989 9.8e-95 352.1 222 77.9
Lj9A645G78 Lonicera japonica HOM05D004944 ORTHO05D005989 1.3e-91 341.7 311 62.4
Sc10g0004240 Simmondsia chinensis HOM05D004944 ORTHO05D005989 1.9e-90 337.8 226 72.6
FAN10G4268 Fragaria x ananassa HOM05D004944 ORTHO05D005989 2.8e-89 334.0 272 64.7
Zm00001eb141330 Zea mays HOM05D004944 ORTHO05D005989 8.9e-88 328.9 532 40.0
Ca_04546_v3 Cicer arietinum L. HOM05D004944 ORTHO05D005989 2.0e-87 327.8 419 47.7
Zm00001eb141350 Zea mays HOM05D004944 ORTHO05D005989 2.5e-82 310.8 355 50.1
CBR_g44528 Chara braunii HOM05D004944 ORTHO05D005989 7.3e-82 309.3 906 28.4
CSS0031841 Camellia sinensis var. sinensis HOM05D004944 ORTHO05D005989 3.3e-74 283.9 174 82.2
Solyc01g068350.3 Solanum lycopersicum HOM05D004944 ORTHO05D005989 1.8e-64 251.5 171 72.5
ATR0721G036 Amborella trichopoda HOM05D004944 ORTHO05D005989 8.4e-62 242.7 170 70.6
CSS0047173 Camellia sinensis var. sinensis HOM05D004944 ORTHO05D005989 1.9e-61 241.5 146 82.9
Peaxi162Scf00309g00016 Petunia axillaris HOM05D004944 ORTHO05D005989 1.5e-58 231.9 165 71.5
vmacro13724 Vaccinium macrocarpon HOM05D004944 ORTHO05D005989 2.8e-57 227.6 154 74.7
Lj9C645T11 Lonicera japonica HOM05D004944 ORTHO05D005989 6.9e-56 223.0 166 70.5
ATR0721G017 Amborella trichopoda HOM05D004944 ORTHO05D005989 4.6e-52 210.3 366 39.6
FAN01G1245 Fragaria x ananassa HOM05D004944 ORTHO05D005989 7.9e-52 209.5 151 71.5
AUR62002442 Chenopodium quinoa HOM05D004944 ORTHO05D005989 5.8e-47 193.4 174 55.7
Prupe.2G032400 Prunus persica HOM05D004944 ORTHO05D005989 1.1e-45 189.1 176 58.0
Lj9A645G77 Lonicera japonica HOM05D004944 ORTHO05D005989 9.3e-45 186.0 120 73.3
BcaNung04417 Brassica carinata HOM05D000343 ORTHO05D003187 2.1e-44 184.9 191 53.4
CSS0009317 Camellia sinensis var. sinensis HOM05D004944 ORTHO05D005989 1.3e-43 182.2 146 65.8
HPP92_001442 Vanilla planifolia HOM05D004944 ORTHO05D005989 2.5e-42 177.9 143 62.2
vmacro13723 Vaccinium macrocarpon HOM05D004944 ORTHO05D005989 9.6e-42 176.0 135 65.9
Sp5g22360 Schrenkiella parvula HOM05D004944 ORTHO05D005989 4.8e-41 173.7 139 61.9
Prupe.2G099800 Prunus persica HOM05D004944 ORTHO05D005989 6.7e-35 153.3 288 37.5
SHI03969 Sapria himalayana HOM05D004944 ORTHO05D005989 2.8e-33 147.9 163 50.9
MCO01G407 Micromonas commoda HOM05D004944 ORTHO05D005989 6.3e-33 146.7 667 27.0
PRCOL_00004679 Prasinoderma coloniale HOM05D004944 ORTHO05D005989 1.3e-30 139.0 280 33.2
Psat5g213600 Pisum sativum HOM05D004944 ORTHO05D005989 9.3e-29 132.9 149 51.7
RcHm_v2.0_Chr4g0391951 Rosa chinensis HOM05D004944 ORTHO05D005989 6.1e-28 130.2 103 64.1
CSS0024385 Camellia sinensis var. sinensis HOM05D004944 ORTHO05D005989 7.9e-28 129.8 91 72.5
Oeu006103.1 Olea europaea HOM05D004944 ORTHO05D005989 2.5e-26 124.8 144 48.6
Haze_26725 Corylus avellana HOM05D004944 ORTHO05D005989 1.6e-25 122.1 279 30.8
SHI03974 Sapria himalayana HOM05D004944 ORTHO05D005989 4.6e-20 104.0 166 42.2
Cre12.g555050 Chlamydomonas reinhardtii HOM05D004944 ORTHO05D005989 7.9e-20 103.2 176 36.9
Lj9A645G79 Lonicera japonica HOM05D004944 ORTHO05D005989 7.9e-20 103.2 55 83.6
SHI03976 Sapria himalayana HOM05D004944 ORTHO05D005989 6.3e-17 93.6 55 72.7
Peaxi162Scf00309g00011 Petunia axillaris HOM05D004944 ORTHO05D005989 1.1e-16 92.8 53 79.2
SHI03965 Sapria himalayana HOM05D004944 ORTHO05D005989 3.4e-15 87.8 83 55.4
Lalb_Chr04g0263911 Lupinus albus HOM05D004944 ORTHO05D005989 7.7e-15 86.7 64 60.9
RcHm_v2.0_Chr5g0078731 Rosa chinensis HOM05D004944 ORTHO05D005989 4.1e-08 64.3 116 39.7
RcHm_v2.0_Chr2g0114761 Rosa chinensis HOM05D004944 ORTHO05D005989 1.6e-07 62.4 111 40.5
SHI03973 Sapria himalayana HOM05D004944 ORTHO05D005989 7.7e-07 60.1 79 41.8


User provided reference genes

Program Settings