Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv30518 Davidia involucrata HOM05D003909 ORTHO05D004478 3.2e-224 781.6 433 100.0
Dinv38052 Davidia involucrata HOM05D003909 ORTHO05D004478 1.6e-159 566.6 435 77.5
CSS0044508 Camellia sinensis var. sinensis HOM05D003909 ORTHO05D004478 1.7e-145 520.0 427 71.7
Lj5C61T11 Lonicera japonica HOM05D003909 ORTHO05D004478 4.4e-141 505.4 438 66.2
Hma1.2p1_0682F.1_g202710 Hydrangea macrophylla HOM05D003909 ORTHO05D004478 2.9e-140 502.7 436 68.3
Actinidia32764 Actinidia chinensis HOM05D003909 ORTHO05D004478 3.5e-138 495.7 435 67.4
Actinidia01799 Actinidia chinensis HOM05D001315 ORTHO05D001618 7.8e-138 494.6 435 66.7
Lj9P507T43 Lonicera japonica HOM05D003909 ORTHO05D004478 2.3e-137 493.0 433 67.2
Rhsim12G0197200 Rhododendron simsii HOM05D003909 ORTHO05D004478 4.3e-136 488.8 436 66.1
CSS0004276 Camellia sinensis var. sinensis HOM05D003909 ORTHO05D004478 9.6e-136 487.6 447 66.7
Actinidia08971 Actinidia chinensis HOM05D003909 ORTHO05D004478 1.8e-134 483.4 435 68.3
Hma1.2p1_0323F.1_g125230 Hydrangea macrophylla HOM05D003909 ORTHO05D004478 1.8e-134 483.4 433 65.1
Manes.11G048200 Manihot esculenta HOM05D003909 ORTHO05D004478 1.8e-134 483.4 459 63.0
TAR626G0719 Trochodendron aralioides HOM05D003909 ORTHO05D004478 1.1e-131 474.2 443 64.6
TAR383G0140 Trochodendron aralioides HOM05D003909 ORTHO05D004478 3.2e-131 472.6 445 64.5
QL05p024883 Quercus lobata HOM05D003909 ORTHO05D004478 3.3e-128 462.6 439 63.8
QL05p024997 Quercus lobata HOM05D003909 ORTHO05D004478 3.3e-128 462.6 439 63.8
Thecc.06G085100 Theobroma cacao HOM05D003909 ORTHO05D004478 9.0e-126 454.5 473 61.7
vmacro18921 Vaccinium macrocarpon HOM05D003909 ORTHO05D004478 9.0e-126 454.5 430 64.2
Duzib160G0939 Durio zibethinus HOM05D003909 ORTHO05D004478 2.9e-124 449.5 472 60.0
Duzib192G0576 Durio zibethinus HOM05D003909 ORTHO05D004478 8.4e-124 448.0 469 60.1
Peaxi162Scf00015g10039 Petunia axillaris HOM05D003909 ORTHO05D004478 1.4e-123 447.2 460 59.3
TAR636G1173 Trochodendron aralioides HOM05D003909 ORTHO05D004478 1.4e-123 447.2 445 61.6
Cc04_g03530 Coffea canephora HOM05D003909 ORTHO05D004478 2.1e-122 443.4 447 60.2
Sopen03g039170 Solanum pennellii HOM05D003909 ORTHO05D004478 4.6e-122 442.2 453 57.6
Manes.04G122500 Manihot esculenta HOM05D003909 ORTHO05D004478 2.3e-121 439.9 451 62.1
CiPaw.01G240200 Carya illinoinensis HOM05D003909 ORTHO05D004478 1.1e-120 437.6 437 61.8
Prupe.3G072500 Prunus persica HOM05D003909 ORTHO05D004478 1.1e-120 437.6 440 60.5
Solyc03g120280.1 Solanum lycopersicum HOM05D003909 ORTHO05D004478 1.1e-120 437.6 454 57.9
Nitab4.5_0006801g0020 Nicotiana tabacum HOM05D003909 ORTHO05D004478 2.8e-119 433.0 457 59.7
CiPaw.02G151900 Carya illinoinensis HOM05D003909 ORTHO05D004478 4.8e-119 432.2 436 60.8
Nitab4.5_0000351g0150 Nicotiana tabacum HOM05D003909 ORTHO05D004478 1.4e-118 430.6 457 58.9
Atru.chr1.3248 Acer truncatum HOM05D003909 ORTHO05D004478 4.0e-118 429.1 469 58.4
CAN.G438.59 Capsicum annuum HOM05D003909 ORTHO05D004478 5.3e-118 428.7 457 59.5
COL.COLO4_30356 Corchorus olitorius HOM05D003909 ORTHO05D004478 1.5e-117 427.2 468 59.4
CAN.G395.16 Capsicum annuum HOM05D003909 ORTHO05D004478 2.0e-117 426.8 452 58.4
Nitab4.5_0002327g0010 Nicotiana tabacum HOM05D003909 ORTHO05D004478 2.0e-117 426.8 453 58.9
Nitab4.5_0000671g0020 Nicotiana tabacum HOM05D003909 ORTHO05D004478 1.3e-116 424.1 454 58.8
TWI75G1291 Tripterygium wilfordii HOM05D003909 ORTHO05D004478 2.5e-115 419.9 445 61.1
Haze_16447 Corylus avellana HOM05D003909 ORTHO05D004478 4.2e-115 419.1 440 60.7
Sabra01G0147800 Salix brachista HOM05D003909 ORTHO05D004478 1.2e-114 417.5 503 52.7
PGSC0003DMG400002641 Solanum tuberosum HOM05D003909 ORTHO05D004478 1.2e-114 417.5 452 56.4
Rhsim08G0220400 Rhododendron simsii HOM05D003909 ORTHO05D004478 2.1e-114 416.8 399 63.7
MSTRG.4728 Avicennia marina HOM05D003909 ORTHO05D004478 3.5e-114 416.0 452 59.5
Aqoxy7G01805 Aquilegia oxysepala HOM05D003909 ORTHO05D004478 4.6e-114 415.6 433 57.7
MSTRG.22695 Avicennia marina HOM05D003909 ORTHO05D004478 1.8e-113 413.7 509 53.0
Potri.001G179100 Populus trichocarpa HOM05D003909 ORTHO05D004478 1.8e-113 413.7 509 54.0
Eucgr.F02948 Eucalyptus grandis HOM05D003909 ORTHO05D004478 3.9e-113 412.5 440 57.5
Cfa002057 Carpinus fangiana HOM05D003909 ORTHO05D004478 1.1e-112 411.0 441 60.5
Potri.003G056400 Populus trichocarpa HOM05D003909 ORTHO05D004478 2.5e-112 409.8 535 51.4
Ciclev10025626m.g Citrus clementina HOM05D003909 ORTHO05D004478 1.3e-111 407.5 463 56.2
CsaV3_7G033090 Cucumis sativus L. HOM05D003909 ORTHO05D004478 8.2e-111 404.8 491 53.6
MELO3C024224.2 Cucumis melo HOM05D003909 ORTHO05D004478 6.9e-110 401.7 490 53.5
Sopen06g025020 Solanum pennellii HOM05D003909 ORTHO05D004478 3.4e-109 399.4 455 55.4
TWI18G1146 Tripterygium wilfordii HOM05D003909 ORTHO05D004478 4.5e-109 399.1 472 56.4
ClCG09G002210 Citrullus lanatus HOM05D003909 ORTHO05D004478 1.3e-108 397.5 512 51.4
ECA247G1970 Erigeron canadensis HOM05D003909 ORTHO05D004478 6.5e-108 395.2 434 58.1
MD09G1214400 Malus domestica HOM05D003909 ORTHO05D004478 6.5e-108 395.2 444 55.4
MD17G1196800 Malus domestica HOM05D003909 ORTHO05D004478 1.1e-107 394.4 451 55.9
Sabra03G0031800 Salix brachista HOM05D003909 ORTHO05D004478 1.1e-107 394.4 510 52.0
Sed0003438 Sechium edule HOM05D003909 ORTHO05D004478 5.5e-107 392.1 491 53.0
Lsat_1_v5_gn_1_34841 Lactuca sativa HOM05D003909 ORTHO05D004478 9.3e-107 391.3 452 56.6
FvH4_6g31000 Fragaria vesca HOM05D003909 ORTHO05D004478 1.8e-105 387.1 450 54.4
Gorai.002G058700 Gossypium raimondii HOM05D003909 ORTHO05D004478 3.9e-105 386.0 468 55.8
Oeu033481.1 Olea europaea HOM05D003909 ORTHO05D004478 8.7e-105 384.8 473 55.6
GSVIVG01017123001 Vitis vinifera HOM05D003909 ORTHO05D004478 2.5e-104 383.3 433 55.0
AUR62016436 Chenopodium quinoa HOM05D003909 ORTHO05D004478 3.3e-104 382.9 466 53.9
Gohir.A02G122200 Gossypium hirsutum HOM05D003909 ORTHO05D004478 3.3e-104 382.9 468 55.8
Solyc06g066740.3 Solanum lycopersicum HOM05D003909 ORTHO05D004478 7.4e-104 381.7 468 53.8
Gohir.D03G074300 Gossypium hirsutum HOM05D003909 ORTHO05D004478 1.6e-103 380.6 467 52.7
Ah.01g006030 Amaranthus hybridus HOM05D003909 ORTHO05D004478 3.7e-103 379.4 472 53.8
Migut.I00858 Erythranthe guttata HOM05D003909 ORTHO05D004478 6.3e-103 378.6 453 55.0
Cpa.g.c31444.1 Carica papaya HOM05D003909 ORTHO05D004478 2.4e-102 376.7 482 51.9
Glyma.15G013600 Glycine max HOM05D003909 ORTHO05D004478 3.1e-102 376.3 473 53.7
Ah.01g021220 Amaranthus hybridus HOM05D003909 ORTHO05D004478 5.3e-102 375.6 461 55.1
Sc15g0001250 Simmondsia chinensis HOM05D003909 ORTHO05D004478 1.5e-101 374.0 470 50.9
Glyma.13G360300 Glycine max HOM05D003909 ORTHO05D004478 2.6e-101 373.2 473 54.5
PGSC0003DMG400016510 Solanum tuberosum HOM05D003909 ORTHO05D004478 2.6e-101 373.2 461 52.7
Lj3g0018129 Lotus japonicus HOM05D003909 ORTHO05D004478 3.4e-101 372.9 463 53.3
HanXRQChr10g0314961 Helianthus annuus HOM05D003909 ORTHO05D004478 1.0e-100 371.3 451 53.4
PSO063G3399 Papaver somniferum HOM05D003909 ORTHO05D004478 1.3e-100 370.9 438 55.7
PSO782G4639 Papaver somniferum HOM05D003909 ORTHO05D004478 1.7e-100 370.5 441 55.6
MBI04_g18158_MAGBIO Magnolia biondii HOM05D003909 ORTHO05D004478 3.8e-100 369.4 444 55.6
VMungo1080G0623 Vigna mungo HOM05D003909 ORTHO05D004478 5.0e-100 369.0 479 53.0
ATR1120G115 Amborella trichopoda HOM05D003909 ORTHO05D004478 1.9e-99 367.1 461 52.7
AUR62011621 Chenopodium quinoa HOM05D003909 ORTHO05D004478 2.5e-99 366.7 456 54.8
Sed0010123 Sechium edule HOM05D003909 ORTHO05D004478 2.5e-99 366.7 504 51.2
FAN05G4496 Fragaria x ananassa HOM05D003909 ORTHO05D004478 2.1e-98 363.6 449 53.5
Phvul.005G172100 Phaseolus vulgaris HOM05D003909 ORTHO05D004478 2.7e-98 363.2 478 52.7
Aa31LG8G3120 Aethionema arabicum HOM05D003909 ORTHO05D004478 1.0e-97 361.3 474 50.8
THA.LOC104810518 Tarenaya hassleriana HOM05D003909 ORTHO05D004478 1.8e-97 360.5 450 54.4
EL10Ac9g21982 Beta vulgaris HOM05D003909 ORTHO05D004478 8.8e-97 358.2 455 54.7
FAN02G1452 Fragaria x ananassa HOM05D003909 ORTHO05D004478 1.1e-96 357.8 450 52.9
PGR102G2609 Punica granatum HOM05D003909 ORTHO05D004478 1.1e-96 357.8 483 49.3
CANSAT56G2173 Cannabis sativa HOM05D003909 ORTHO05D004478 1.5e-96 357.5 449 52.8
DCAR_026310 Daucus carota HOM05D003909 ORTHO05D004478 2.2e-95 353.6 477 52.6
HanXRQChr02g0032691 Helianthus annuus HOM05D003909 ORTHO05D004478 6.3e-95 352.1 452 54.0
Thhalv10020773m.g Eutrema salsugineum HOM05D003909 ORTHO05D004478 1.8e-94 350.5 451 50.8
arahy.Tifrunner.gnm1.ann1.63P8XR Arachis hypogaea HOM05D003909 ORTHO05D004478 3.1e-94 349.7 466 51.9
Sp3g14320 Schrenkiella parvula HOM05D003909 ORTHO05D004478 9.1e-94 348.2 444 50.9
CARHR091100 Cardamine hirsuta HOM05D003909 ORTHO05D004478 3.4e-93 346.3 471 48.4
Medtr4g011930 Medicago truncatula HOM05D003909 ORTHO05D004478 1.9e-91 340.5 458 50.4
SEGI_39159 Sequoiadendron giganteum HOM05D003909 ORTHO05D004478 4.2e-91 339.3 474 49.2
AL3G28620 Arabidopsis lyrata HOM05D003909 ORTHO05D004478 5.5e-91 339.0 484 49.4
Carub.0003s1570 Capsella rubella HOM05D003909 ORTHO05D004478 9.4e-91 338.2 456 50.2
TPR.G24152 Trifolium pratense HOM05D003909 ORTHO05D004478 3.0e-89 333.2 447 52.6
Nn8g39239 Nelumbo nucifera HOM05D003909 ORTHO05D004478 3.9e-89 332.8 399 56.9
Carub.0001s4138 Capsella rubella HOM05D003909 ORTHO05D004478 5.1e-89 332.4 464 48.3
unitig_21.g20517 Utricularia gibba HOM05D003909 ORTHO05D004478 7.4e-88 328.6 458 47.8
AT3G15970 Arabidopsis thaliana HOM05D003909 ORTHO05D004478 1.3e-87 327.8 484 47.9
Ca_20399_v3 Cicer arietinum L. HOM05D003909 ORTHO05D004478 3.7e-87 326.2 453 49.9
MBI01_g16632_MAGBIO Magnolia biondii HOM05D003909 ORTHO05D004478 3.7e-87 326.2 423 52.0
AT1G52380 Arabidopsis thaliana HOM05D003909 ORTHO05D004478 5.3e-86 322.4 464 47.0
BcaB02g10997 Brassica carinata HOM05D003909 ORTHO05D004478 9.1e-86 321.6 448 50.2
Nn2g11803 Nelumbo nucifera HOM05D003909 ORTHO05D004478 9.1e-86 321.6 411 53.3
Lalb_Chr22g0351201 Lupinus albus HOM05D003909 ORTHO05D004478 1.2e-85 321.2 453 50.1
SGA_v2.0_scaffold5G02599 Striga asiatica HOM05D003909 ORTHO05D004478 2.6e-85 320.1 443 49.9
Lalb_Chr24g0395791 Lupinus albus HOM05D003909 ORTHO05D004478 7.7e-85 318.5 464 50.4
SalBow2G1612 Salvia bowleyana HOM05D003909 ORTHO05D004478 1.3e-84 317.8 386 52.1
HanXRQChr04g0096531 Helianthus annuus HOM05D003909 ORTHO05D004478 6.5e-84 315.5 494 48.2
CARHR042530 Cardamine hirsuta HOM05D003909 ORTHO05D004478 8.5e-84 315.1 441 49.0
Os05g0349500 Oryza sativa ssp. japonica HOM05D003909 ORTHO05D004478 1.5e-83 314.3 494 46.0
THA.LOC104818004 Tarenaya hassleriana HOM05D003909 ORTHO05D004478 2.5e-83 313.5 448 50.9
BolC6t35869H Brassica oleracea HOM05D003909 ORTHO05D004478 6.1e-82 308.9 437 48.3
A05p19040 Brassica napus HOM05D003909 ORTHO05D004478 1.8e-81 307.4 454 48.7
AL1G60630 Arabidopsis lyrata HOM05D003909 ORTHO05D004478 3.0e-81 306.6 463 46.2
BraA05t20804Z Brassica rapa HOM05D003909 ORTHO05D004478 3.9e-81 306.2 454 48.5
Psat7g253000 Pisum sativum HOM05D003909 ORTHO05D004478 3.9e-81 306.2 431 47.3
C06p07830 Brassica napus HOM05D003909 ORTHO05D004478 8.8e-81 305.1 438 48.2
Sp1g38990 Schrenkiella parvula HOM05D003909 ORTHO05D004478 2.6e-80 303.5 464 47.8
Lalb_Chr14g0373481 Lupinus albus HOM05D003909 ORTHO05D004478 4.4e-80 302.8 471 47.6
BraA06t23402Z Brassica rapa HOM05D003909 ORTHO05D004478 1.7e-79 300.8 446 47.8
A06p01850 Brassica napus HOM05D003909 ORTHO05D004478 4.8e-79 299.3 445 47.2
BcaC08g43991 Brassica carinata HOM05D003909 ORTHO05D004478 1.4e-78 297.7 449 45.2
C06p13960 Brassica napus HOM05D003909 ORTHO05D004478 1.4e-78 297.7 449 45.2
BolC6t36574H Brassica oleracea HOM05D001315 ORTHO05D001618 1.4e-78 297.7 449 45.2
Thhalv10011504m.g Eutrema salsugineum HOM05D003909 ORTHO05D004478 2.0e-77 293.9 456 46.5
Aa31LG10G2540 Aethionema arabicum HOM05D003909 ORTHO05D004478 3.6e-74 283.1 446 46.6
RcHm_v2.0_Chr2g0137631 Rosa chinensis HOM05D003909 ORTHO05D004478 4.0e-73 279.6 436 46.6
HPP92_019977 Vanilla planifolia HOM05D003909 ORTHO05D004478 1.3e-71 274.6 471 46.3
Zm00001eb360880 Zea mays HOM05D003909 ORTHO05D004478 1.1e-67 261.5 453 42.8
SEGI_02359 Sequoiadendron giganteum HOM05D003909 ORTHO05D004478 5.2e-65 252.7 457 43.1
MBI04_g40091_MAGBIO Magnolia biondii HOM05D003909 ORTHO05D004478 2.8e-63 246.9 346 50.6
Mapoly0073s0079 Marchantia polymorpha HOM05D003909 ORTHO05D004478 1.7e-60 237.7 481 40.7
BcaC01g03847 Brassica carinata HOM05D003909 ORTHO05D004478 9.5e-59 231.9 436 42.0
C03p47980 Brassica napus HOM05D003909 ORTHO05D004478 9.5e-59 231.9 436 42.0
BcaC08g43418 Brassica carinata HOM05D003909 ORTHO05D004478 2.1e-58 230.7 450 40.2
BolC3t17078H Brassica oleracea HOM05D003909 ORTHO05D004478 2.8e-58 230.3 436 41.7
Zm00001eb155830 Zea mays HOM05D003909 ORTHO05D004478 2.9e-55 220.3 438 38.6
SHI24405 Sapria himalayana HOM05D003909 ORTHO05D004478 2.5e-51 207.2 435 39.8
BcaC08g43420 Brassica carinata HOM05D003909 ORTHO05D004478 6.8e-49 199.1 153 69.3
CDE06G1609 Ceratophyllum demersum HOM05D003909 ORTHO05D004478 2.0e-48 197.6 341 46.3
unitig_744.g24336 Utricularia gibba HOM05D003909 ORTHO05D004478 7.0e-46 189.1 357 42.6
SMO351G0411 Selaginella moellendorffii HOM05D003848 ORTHO05D004616 2.0e-45 187.6 427 39.8
AagrBONN_evm.TU.Sc2ySwM_228.3069 Anthoceros agrestis HOM05D003909 ORTHO05D004478 6.0e-45 186.0 464 40.3
Pp3c3_6080 Physcomitrium patens HOM05D003909 ORTHO05D004478 4.0e-41 173.3 455 37.4
MBI04_g43353_MAGBIO Magnolia biondii HOM05D003909 ORTHO05D004478 2.0e-40 171.0 169 58.0
Actinidia14363 Actinidia chinensis HOM05D003909 ORTHO05D004478 1.1e-30 138.7 86 74.4
A06p01830 Brassica napus HOM05D003909 ORTHO05D004478 2.3e-28 131.0 100 67.0
BcaC01g01324 Brassica carinata HOM05D003909 ORTHO05D004478 1.7e-23 114.8 139 49.6
BraA06t23400Z Brassica rapa HOM05D003909 ORTHO05D004478 1.0e-20 105.5 89 65.2
C03p90640 Brassica napus HOM05D003909 ORTHO05D004478 1.1e-19 102.1 132 47.7
Psat4g143640 Pisum sativum HOM05D002956 ORTHO05D008031 3.6e-18 97.1 106 58.5
CBR_g38869 Chara braunii HOM05D003909 ORTHO05D004478 4.8e-18 96.7 487 26.9
BolC3t21386H Brassica oleracea HOM05D001315 ORTHO05D001618 8.1e-18 95.9 190 38.4
A03p39600 Brassica napus HOM05D003909 ORTHO05D004478 1.1e-17 95.5 86 60.5
MCO12G345 Micromonas commoda HOM05D003909 ORTHO05D004478 1.2e-16 92.0 142 35.2
Medtr1g112060 Medicago truncatula HOM05D003909 ORTHO05D004478 5.8e-16 89.7 98 55.1
arahy.Tifrunner.gnm1.ann1.HH7TIC Arachis hypogaea HOM05D003909 ORTHO05D004478 2.2e-15 87.8 117 53.0
unitig_744.g24337 Utricularia gibba HOM05D003909 ORTHO05D004478 2.2e-15 87.8 67 62.7
C06p07870 Brassica napus HOM05D003909 ORTHO05D004478 1.9e-14 84.7 115 43.5
BolC6t35871H Brassica oleracea HOM05D003909 ORTHO05D004478 3.2e-14 84.0 118 43.2
HPP92_020042 Vanilla planifolia HOM05D003909 ORTHO05D004478 2.7e-13 80.9 138 42.0
PRCOL_00002651 Prasinoderma coloniale HOM05D003909 ORTHO05D004478 1.1e-11 75.5 237 29.5
Cre15.g641000 Chlamydomonas reinhardtii HOM05D003909 ORTHO05D004478 4.8e-10 70.1 87 41.4
MBI04_g43354_MAGBIO Magnolia biondii HOM05D003909 ORTHO05D004478 6.9e-09 66.2 77 58.4
FAN09G3670 Fragaria x ananassa HOM05D003909 ORTHO05D004478 2.0e-08 64.7 67 55.2
Cfa024721 Carpinus fangiana HOM05D003909 ORTHO05D121609 2.6e-08 64.3 67 44.8
CSS0029378 Camellia sinensis var. sinensis HOM05D002258 ORTHO05D002539 9.3e-06 55.8 125 33.6
CSS0036996 Camellia sinensis var. sinensis HOM05D002258 ORTHO05D002539 9.3e-06 55.8 125 33.6


User provided reference genes

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