Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv30299 Davidia involucrata HOM05D003639 ORTHO05D004246 6.4e-180 634.8 575 100.0
CSS0048368 Camellia sinensis var. sinensis HOM05D003639 ORTHO05D004246 1.1e-123 448.0 602 72.4
Hma1.2p1_2162F.1_g315680 Hydrangea macrophylla HOM05D003639 ORTHO05D004246 7.2e-123 445.3 587 76.7
CSS0037940 Camellia sinensis var. sinensis HOM05D003639 ORTHO05D004246 2.4e-118 430.3 598 58.2
Actinidia39194 Actinidia chinensis HOM05D003639 ORTHO05D004246 5.0e-116 422.5 434 70.0
Thecc.02G139000 Theobroma cacao HOM05D003639 ORTHO05D004246 4.7e-114 416.0 408 69.1
Duzib132G0222 Durio zibethinus HOM05D003639 ORTHO05D004246 8.0e-114 415.2 408 70.6
Gohir.A12G015000 Gossypium hirsutum HOM05D003639 ORTHO05D004246 1.7e-111 407.5 412 72.8
Gorai.008G015500 Gossypium raimondii HOM05D003639 ORTHO05D004246 1.1e-110 404.8 412 72.3
Gohir.D12G015400 Gossypium hirsutum HOM05D003639 ORTHO05D004246 7.0e-110 402.1 412 72.3
Migut.J01707 Erythranthe guttata HOM05D003639 ORTHO05D004246 1.0e-108 398.3 577 73.0
COL.COLO4_24957 Corchorus olitorius HOM05D003639 ORTHO05D004246 1.3e-108 397.9 407 68.6
Nitab4.5_0000826g0140 Nicotiana tabacum HOM05D003639 ORTHO05D004246 3.0e-108 396.7 590 72.5
QL07p005224 Quercus lobata HOM05D003639 ORTHO05D004246 5.0e-108 396.0 372 65.3
CAN.G1237.4 Capsicum annuum HOM05D003639 ORTHO05D004246 6.6e-108 395.6 581 72.3
Phvul.007G249600 Phaseolus vulgaris HOM05D003639 ORTHO05D004246 6.6e-108 395.6 577 73.5
Nitab4.5_0001618g0260 Nicotiana tabacum HOM05D003639 ORTHO05D004246 3.3e-107 393.3 581 73.8
Rhsim03G0032000 Rhododendron simsii HOM05D003639 ORTHO05D004246 2.1e-106 390.6 412 66.7
ClCG08G008940 Citrullus lanatus HOM05D003639 ORTHO05D004246 2.8e-106 390.2 576 69.1
PGSC0003DMG400012703 Solanum tuberosum HOM05D003639 ORTHO05D004246 3.6e-106 389.8 365 64.4
DCAR_014011 Daucus carota HOM05D003639 ORTHO05D004246 8.0e-106 388.7 367 64.9
Duzib248G1450 Durio zibethinus HOM05D003639 ORTHO05D004246 1.0e-105 388.3 408 65.9
Solyc04g016510.3 Solanum lycopersicum HOM05D003639 ORTHO05D004246 1.4e-105 387.9 365 65.2
Manes.09G015900 Manihot esculenta HOM05D003639 ORTHO05D004246 3.1e-105 386.7 567 76.0
CANSAT80G0359 Cannabis sativa HOM05D003639 ORTHO05D004246 6.8e-105 385.6 424 72.6
Sopen04g008580 Solanum pennellii HOM05D003639 ORTHO05D004246 2.6e-104 383.6 365 63.3
MELO3C026433.2 Cucumis melo HOM05D003639 ORTHO05D004246 3.4e-104 383.3 576 69.6
CsaV3_6G036200 Cucumis sativus L. HOM05D003639 ORTHO05D004246 4.4e-104 382.9 404 68.1
CiPaw.09G042100 Carya illinoinensis HOM05D003639 ORTHO05D004246 5.8e-104 382.5 578 73.4
CANSAT80G2101 Cannabis sativa HOM05D003639 ORTHO05D004246 7.5e-104 382.1 416 73.3
Oeu023136.1 Olea europaea HOM05D003639 ORTHO05D004246 2.2e-103 380.6 407 69.3
TWI74G0834 Tripterygium wilfordii HOM05D003639 ORTHO05D004246 2.9e-103 380.2 368 68.5
Glyma.02G190600 Glycine max HOM05D003639 ORTHO05D004246 3.7e-103 379.8 361 60.7
TAR369G0628 Trochodendron aralioides HOM05D003639 ORTHO05D004246 1.9e-102 377.5 421 65.6
Haze_19749 Corylus avellana HOM05D003639 ORTHO05D004246 3.2e-102 376.7 372 59.1
Prupe.7G050300 Prunus persica HOM05D003639 ORTHO05D004246 1.2e-101 374.8 534 71.9
Lj4C34T1 Lonicera japonica HOM05D003639 ORTHO05D004246 4.6e-101 372.9 335 66.6
VMungo0720G2842 Vigna mungo HOM05D003639 ORTHO05D004246 6.0e-101 372.5 577 73.3
Ciclev10006458m.g Citrus clementina HOM05D003639 ORTHO05D004246 2.3e-100 370.5 416 66.6
arahy.Tifrunner.gnm1.ann1.Y8CJQK Arachis hypogaea HOM05D003639 ORTHO05D004246 3.9e-100 369.8 383 59.8
SalBow6G0945 Salvia bowleyana HOM05D003639 ORTHO05D004246 5.0e-100 369.4 364 62.4
MSTRG.6401 Avicennia marina HOM05D003639 ORTHO05D004246 6.6e-100 369.0 355 60.6
arahy.Tifrunner.gnm1.ann1.6W6BYV Arachis hypogaea HOM05D003639 ORTHO05D004246 2.5e-99 367.1 383 59.8
Hund19126 Selenicereus undatus HOM05D003639 ORTHO05D004246 2.5e-99 367.1 621 69.7
PGR004G0521 Punica granatum HOM05D003639 ORTHO05D004246 9.5e-99 365.2 588 66.2
Peaxi162Scf00130g00929 Petunia axillaris HOM05D003639 ORTHO05D004246 1.2e-98 364.8 361 65.9
Ah.13g076790 Amaranthus hybridus HOM05D003639 ORTHO05D004246 2.8e-98 363.6 417 62.8
AUR62026120 Chenopodium quinoa HOM05D003639 ORTHO05D004246 8.1e-98 362.1 421 62.7
Cpa.g.sc120.6 Carica papaya HOM05D003639 ORTHO05D004246 1.4e-97 361.3 361 59.3
Glyma.10G000800 Glycine max HOM05D003639 ORTHO05D004246 1.4e-97 361.3 361 64.0
MD12G1086300 Malus domestica HOM05D003639 ORTHO05D004246 1.8e-97 360.9 544 71.0
Aqoxy3G00063 Aquilegia oxysepala HOM05D003639 ORTHO05D004246 6.8e-97 359.0 470 80.0
Sc19g0008460 Simmondsia chinensis HOM05D003639 ORTHO05D004246 6.8e-97 359.0 374 63.4
AUR62024528 Chenopodium quinoa HOM05D003639 ORTHO05D004246 8.9e-97 358.6 422 61.1
Nn7g37752 Nelumbo nucifera HOM05D003639 ORTHO05D004246 1.2e-96 358.2 424 63.7
Lsat_1_v5_gn_4_41600 Lactuca sativa HOM05D003639 ORTHO05D004246 3.4e-96 356.7 580 69.0
Potri.006G045800 Populus trichocarpa HOM05D003639 ORTHO05D004246 5.8e-96 355.9 579 71.3
Lj5g0008946 Lotus japonicus HOM05D003639 ORTHO05D004246 1.7e-95 354.4 370 57.3
EL10Ac3g07157 Beta vulgaris HOM05D003639 ORTHO05D004246 2.4e-94 350.5 433 61.0
Medtr3g045130 Medicago truncatula HOM05D003639 ORTHO05D004246 5.4e-94 349.4 365 57.8
Ca_25791_v3 Cicer arietinum L. HOM05D003639 ORTHO05D004246 1.6e-93 347.8 281 67.6
Peaxi162Scf00177g10117 Petunia axillaris HOM05D003639 ORTHO05D004246 1.0e-92 345.1 262 71.4
Lalb_Chr21g0305241 Lupinus albus HOM05D003639 ORTHO05D004246 1.3e-92 344.7 359 57.7
Eucgr.A02297 Eucalyptus grandis HOM05D003639 ORTHO05D004246 2.3e-92 344.0 410 64.4
SGA_v2.0_scaffold296G47577 Striga asiatica HOM05D003639 ORTHO05D004246 3.0e-92 343.6 498 74.3
MBI13_g04793_MAGBIO Magnolia biondii HOM05D003639 ORTHO05D004246 5.1e-92 342.8 596 68.5
Psat6g009840 Pisum sativum HOM05D003639 ORTHO05D004246 3.3e-91 340.1 364 59.9
SGA_v2.0_scaffold69G23129 Striga asiatica HOM05D003639 ORTHO05D004246 3.3e-91 340.1 498 58.2
unitig_44.g31550 Utricularia gibba HOM05D003639 ORTHO05D004246 3.3e-91 340.1 375 61.3
TPR.G1512 Trifolium pratense HOM05D003639 ORTHO05D004246 6.2e-90 335.9 280 64.3
unitig_578.g16292 Utricularia gibba HOM05D003639 ORTHO05D004246 1.4e-89 334.7 575 65.0
Hma1.2p1_0338F.1_g129500 Hydrangea macrophylla HOM05D003639 ORTHO05D004246 2.6e-88 330.5 457 73.1
Hma1.2p1_1333F.1_g276240 Hydrangea macrophylla HOM05D003639 ORTHO05D004246 3.7e-87 326.6 457 77.0
CDE04G0356 Ceratophyllum demersum HOM05D003639 ORTHO05D004246 2.4e-86 323.9 471 73.2
Sed0002463 Sechium edule HOM05D003639 ORTHO05D004246 4.6e-85 319.7 407 62.9
ECA234G2577 Erigeron canadensis HOM05D003639 ORTHO05D004246 7.8e-85 318.9 497 71.4
TPR.G10246 Trifolium pratense HOM05D003639 ORTHO05D004246 1.0e-84 318.5 384 50.8
Atru.chr1.1191 Acer truncatum HOM05D003639 ORTHO05D004246 5.1e-84 316.2 293 69.6
THA.LOC104824426 Tarenaya hassleriana HOM05D003639 ORTHO05D004246 1.1e-81 308.5 326 62.6
PSO832G3057 Papaver somniferum HOM05D003639 ORTHO05D004246 8.9e-81 305.4 356 57.6
SEGI_17823 Sequoiadendron giganteum HOM05D003639 ORTHO05D004246 1.7e-79 301.2 318 64.2
ATR0665G145 Amborella trichopoda HOM05D003639 ORTHO05D004246 2.2e-79 300.8 489 69.3
Aa31LG1G23520 Aethionema arabicum HOM05D003639 ORTHO05D004246 2.9e-79 300.4 324 61.4
Sp4g23770 Schrenkiella parvula HOM05D003639 ORTHO05D004246 2.9e-79 300.4 403 57.8
Carub.0004s0611 Capsella rubella HOM05D003639 ORTHO05D004246 6.4e-79 299.3 324 61.7
Medtr5g022690 Medicago truncatula HOM05D003639 ORTHO05D004246 1.4e-78 298.1 228 68.9
A04p31660 Brassica napus HOM05D003639 ORTHO05D004246 2.4e-78 297.4 324 61.1
BraA04t18624Z Brassica rapa HOM05D003639 ORTHO05D004246 2.4e-78 297.4 324 61.1
C04p69090 Brassica napus HOM05D003639 ORTHO05D004246 5.4e-78 296.2 324 60.8
BolC4t28406H Brassica oleracea HOM05D003639 ORTHO05D004246 5.4e-78 296.2 324 60.8
AL4G39590 Arabidopsis lyrata HOM05D003639 ORTHO05D004246 2.7e-77 293.9 324 59.9
Thhalv10000860m.g Eutrema salsugineum HOM05D003639 ORTHO05D004246 4.6e-77 293.1 325 59.4
PSO063G3048 Papaver somniferum HOM05D003639 ORTHO05D004246 1.0e-76 292.0 356 57.6
CARHR136620 Cardamine hirsuta HOM05D003639 ORTHO05D004246 1.7e-76 291.2 399 57.4
AT2G41500 Arabidopsis thaliana HOM05D003639 ORTHO05D004246 2.3e-76 290.8 324 59.6
FAN14G4828 Fragaria x ananassa HOM05D003639 ORTHO05D004246 2.5e-75 287.3 250 64.0
FvH4_6g24750 Fragaria vesca HOM05D003639 ORTHO05D004246 1.6e-74 284.6 250 63.6
A05p02320 Brassica napus HOM05D003639 ORTHO05D004246 2.8e-74 283.9 295 63.7
FAN09G0054 Fragaria x ananassa HOM05D003639 ORTHO05D004246 3.6e-74 283.5 234 65.4
Thhalv10016457m.g Eutrema salsugineum HOM05D003639 ORTHO05D004246 8.1e-74 282.3 404 55.9
BraA05t19227Z Brassica rapa HOM05D003639 ORTHO05D004246 2.4e-73 280.8 325 59.1
FAN02G3905 Fragaria x ananassa HOM05D003639 ORTHO05D004246 5.3e-73 279.6 250 63.6
C04p02760 Brassica napus HOM05D003639 ORTHO05D004246 6.9e-73 279.3 325 59.1
BolC4t21916H Brassica oleracea HOM05D003639 ORTHO05D004246 6.9e-73 279.3 296 62.5
Os03g0355200 Oryza sativa ssp. japonica HOM05D003639 ORTHO05D004246 6.9e-73 279.3 254 60.2
Os03g0355400 Oryza sativa ssp. japonica HOM05D003639 ORTHO05D004246 6.9e-73 279.3 254 60.2
FAN05G0107 Fragaria x ananassa HOM05D003639 ORTHO05D004246 9.9e-72 275.4 227 65.6
HPP92_010189 Vanilla planifolia HOM05D003639 ORTHO05D004246 2.9e-71 273.9 486 62.3
HPP92_010210 Vanilla planifolia HOM05D000527 ORTHO05D000559 2.3e-68 264.2 314 62.1
RcHm_v2.0_Chr3g0484331 Rosa chinensis HOM05D003639 ORTHO05D004246 2.5e-67 260.8 232 63.4
Sabra06G0031300 Salix brachista HOM05D003639 ORTHO05D004246 5.6e-67 259.6 406 58.6
BcaNung06794 Brassica carinata HOM05D003639 ORTHO05D004246 7.4e-67 259.2 325 57.2
TAR065G0005 Trochodendron aralioides HOM05D003639 ORTHO05D004246 3.6e-66 256.9 230 72.2
CBR_g723 Chara braunii HOM05D003639 ORTHO05D004246 6.4e-63 246.1 224 58.9
BcaC02g12784 Brassica carinata HOM05D003639 ORTHO05D004246 2.4e-62 244.2 325 55.1
Pp3c9_11970 Physcomitrium patens HOM05D003639 ORTHO05D004246 5.5e-62 243.0 262 54.6
Potri.016G042250 Populus trichocarpa HOM05D003639 ORTHO05D004246 2.1e-61 241.1 400 45.0
Mapoly0061s0123 Marchantia polymorpha HOM05D003639 ORTHO05D004246 4.6e-61 240.0 254 53.1
AagrBONN_evm.TU.Sc2ySwM_117.1154 Anthoceros agrestis HOM05D003639 ORTHO05D004246 7.9e-61 239.2 246 54.1
Zm00001eb017050 Zea mays HOM05D003639 ORTHO05D004246 1.3e-60 238.4 192 64.1
GSVIVG01033551001 Vitis vinifera HOM05D003639 ORTHO05D004246 1.5e-59 235.0 387 78.6
Cc06_g18350 Coffea canephora HOM05D003639 ORTHO05D004246 1.6e-58 231.5 387 78.6
MD14G1080500 Malus domestica HOM05D003639 ORTHO05D004246 4.8e-58 229.9 194 64.4
SMO356G0612 Selaginella moellendorffii HOM05D003639 ORTHO05D004246 4.2e-54 216.9 224 54.9
VMungo0540G1675 Vigna mungo HOM05D003639 ORTHO05D004246 1.1e-51 208.8 185 57.3
Mapoly0014s0154 Marchantia polymorpha HOM05D003639 ORTHO05D004246 3.7e-50 203.8 240 49.6
Sed0000547 Sechium edule HOM05D003639 ORTHO05D004246 3.7e-50 203.8 159 67.3
Psat6g118240 Pisum sativum HOM05D003639 ORTHO05D004246 1.7e-47 194.9 418 46.4
FAN10G2664 Fragaria x ananassa HOM05D003639 ORTHO05D004246 1.5e-43 181.8 183 60.1
FAN14G5922 Fragaria x ananassa HOM05D003639 ORTHO05D004246 1.5e-43 181.8 183 60.1
FAN19G1783 Fragaria x ananassa HOM05D003639 ORTHO05D004246 1.5e-43 181.8 183 60.1
FAN03G0195 Fragaria x ananassa HOM05D003639 ORTHO05D004246 4.3e-43 180.3 183 59.6
FAN07G1748 Fragaria x ananassa HOM05D003639 ORTHO05D004246 4.3e-43 180.3 183 59.6
FAN17G3014 Fragaria x ananassa HOM05D003639 ORTHO05D004246 4.3e-43 180.3 183 60.1
FAN23G2202 Fragaria x ananassa HOM05D003639 ORTHO05D004246 4.3e-43 180.3 183 59.6
FAN01G0512 Fragaria x ananassa HOM05D003639 ORTHO05D004246 9.7e-43 179.1 183 59.6
FAN24G0290 Fragaria x ananassa HOM05D003639 ORTHO05D004246 9.7e-43 179.1 183 59.6
FAN28G1931 Fragaria x ananassa HOM05D003639 ORTHO05D004246 1.3e-42 178.7 183 59.6
FAN06G0994 Fragaria x ananassa HOM05D003639 ORTHO05D004246 1.6e-42 178.3 183 59.0
FAN22G1757 Fragaria x ananassa HOM05D003639 ORTHO05D004246 1.1e-41 175.6 183 58.5
FAN27G3180 Fragaria x ananassa HOM05D003639 ORTHO05D004246 1.8e-41 174.9 183 58.5
FAN13G2401 Fragaria x ananassa HOM05D003639 ORTHO05D004246 2.4e-41 174.5 171 59.6
BcaB06g29187 Brassica carinata HOM05D003639 ORTHO05D004246 1.5e-40 171.8 187 64.2
FAN09G4382 Fragaria x ananassa HOM05D003639 ORTHO05D004246 1.0e-39 169.1 178 58.4
BcaNung04072 Brassica carinata HOM05D003639 ORTHO05D004246 2.2e-39 167.9 154 55.8
Medtr0012s0110 Medicago truncatula HOM05D003639 ORTHO05D004246 2.9e-39 167.5 213 54.5
FAN16G0989 Fragaria x ananassa HOM05D003639 ORTHO05D004246 5.0e-39 166.8 183 56.8
Atru.chr6.1378 Acer truncatum HOM05D003639 ORTHO05D004246 9.4e-38 162.5 210 54.3
MELO3C019779.2 Cucumis melo HOM05D003639 ORTHO05D004246 2.6e-35 154.5 170 51.8
vmacro21947 Vaccinium macrocarpon HOM05D003639 ORTHO05D004246 7.4e-35 152.9 281 42.7
BolC5t34692H Brassica oleracea HOM05D003639 ORTHO05D004246 3.7e-34 150.6 174 53.4
RcHm_v2.0_Chr3g0484501 Rosa chinensis HOM05D003639 ORTHO05D004246 5.3e-33 146.7 155 50.3
FAN25G1774 Fragaria x ananassa HOM05D003639 ORTHO05D004246 3.8e-31 140.6 183 50.8
MCO12G002 Micromonas commoda HOM05D003639 ORTHO05D004246 6.5e-31 139.8 210 41.4
Atru.chr6.1379 Acer truncatum HOM05D003639 ORTHO05D004246 2.1e-29 134.8 79 82.3
FAN17G0086 Fragaria x ananassa HOM05D003639 ORTHO05D004246 9.7e-27 125.9 144 56.2
RcHm_v2.0_Chr3g0484401 Rosa chinensis HOM05D003639 ORTHO05D004246 1.7e-26 125.2 106 61.3
AT2G05720 Arabidopsis thaliana HOM05D003639 ORTHO05D004246 2.2e-26 124.8 114 56.1
MELO3C019777.2 Cucumis melo HOM05D003639 ORTHO05D004246 1.3e-23 115.5 162 50.6
AL3G43260 Arabidopsis lyrata HOM05D003639 ORTHO05D004246 2.2e-18 98.2 134 41.0
Cfa024100 Carpinus fangiana HOM05D003639 ORTHO05D004246 1.4e-17 95.5 224 37.5
Psat4g106880 Pisum sativum HOM05D003639 ORTHO05D004246 2.4e-17 94.7 120 50.0
Cre16.g662800 Chlamydomonas reinhardtii HOM05D003639 ORTHO05D004246 7.0e-17 93.2 122 44.3
QL04p089213 Quercus lobata HOM05D003639 ORTHO05D004246 4.2e-14 84.0 213 39.0
PRCOL_00003365 Prasinoderma coloniale HOM05D003639 ORTHO05D004246 1.6e-13 82.0 190 38.4
Actinidia09297 Actinidia chinensis HOM05D003639 ORTHO05D004246 4.8e-10 70.5 133 50.4
QL05p082994 Quercus lobata HOM05D003639 ORTHO05D004246 6.3e-10 70.1 175 36.0
vmacro06312 Vaccinium macrocarpon HOM05D003639 ORTHO05D004246 8.3e-10 69.7 134 41.8
TAR065G0002 Trochodendron aralioides HOM05D003639 ORTHO05D004246 3.1e-09 67.8 151 54.3
Atru.chr1.1192 Acer truncatum HOM05D003639 ORTHO05D004246 5.4e-09 67.0 99 70.7
Atru.chr6.1380 Acer truncatum HOM05D003639 ORTHO05D004246 1.2e-08 65.9 239 57.3
Zm00001eb344450 Zea mays HOM05D003639 ORTHO05D004246 2.0e-08 65.1 50 58.0
Lj4A34T49 Lonicera japonica HOM05D003639 ORTHO05D004246 2.5e-06 58.2 266 81.2


User provided reference genes

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