Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv28888 Davidia involucrata HOM05D005140 ORTHO05D006288 0.0e+00 1295.4 643 100.0
Dinv25152 Davidia involucrata HOM05D005140 ORTHO05D006288 3.4e-230 802.0 404 93.6
Rhsim07G0119600 Rhododendron simsii HOM05D005140 ORTHO05D006288 1.6e-216 756.5 403 87.8
Glyma.11G039000 Glycine max HOM05D005140 ORTHO05D006288 4.2e-212 741.9 404 85.4
Glyma.01G204000 Glycine max HOM05D005140 ORTHO05D006288 2.3e-210 736.1 404 85.1
vmacro23518 Vaccinium macrocarpon HOM05D005140 ORTHO05D006288 3.0e-210 735.7 428 85.7
Phvul.002G002400 Phaseolus vulgaris HOM05D005140 ORTHO05D006288 5.1e-210 734.9 408 84.6
Gorai.004G191200 Gossypium raimondii HOM05D005140 ORTHO05D006288 1.3e-208 730.3 396 86.1
Thecc.03G238100 Theobroma cacao HOM05D005140 ORTHO05D006288 2.1e-208 729.6 393 87.3
CiPaw.12G056200 Carya illinoinensis HOM05D005140 ORTHO05D006288 1.1e-207 727.2 397 86.1
MSTRG.13768 Avicennia marina HOM05D005140 ORTHO05D006288 1.8e-207 726.5 407 83.5
TAR636G3078 Trochodendron aralioides HOM05D005140 ORTHO05D006288 2.4e-207 726.1 395 86.6
Lalb_Chr09g0324091 Lupinus albus HOM05D005140 ORTHO05D006288 3.1e-207 725.7 395 84.1
Solyc08g077750.4 Solanum lycopersicum HOM05D005140 ORTHO05D006288 5.3e-207 724.9 389 86.4
ClCG09G012630 Citrullus lanatus HOM05D005140 ORTHO05D006288 6.9e-207 724.5 412 83.0
Sopen08g026270 Solanum pennellii HOM05D005140 ORTHO05D006288 6.9e-207 724.5 389 86.1
Actinidia31490 Actinidia chinensis HOM05D005140 ORTHO05D006288 1.2e-206 723.8 446 78.9
Gohir.D08G182300 Gossypium hirsutum HOM05D005140 ORTHO05D006288 3.4e-206 722.2 396 85.4
CsaV3_3G049760 Cucumis sativus L. HOM05D005140 ORTHO05D006288 4.5e-206 721.8 413 82.8
Nn6g33739 Nelumbo nucifera HOM05D005140 ORTHO05D006288 4.5e-206 721.8 396 85.6
Prupe.5G053400 Prunus persica HOM05D005140 ORTHO05D006288 1.3e-205 720.3 414 83.3
Sed0013740 Sechium edule HOM05D005140 ORTHO05D006288 1.3e-205 720.3 408 83.1
SGA_v2.0_scaffold20G09272 Striga asiatica HOM05D005140 ORTHO05D006288 1.7e-205 719.9 415 82.7
MELO3C003340.2 Cucumis melo HOM05D005140 ORTHO05D006288 2.9e-205 719.2 413 82.6
Atru.chr9.1157 Acer truncatum HOM05D005140 ORTHO05D006288 3.8e-205 718.8 400 83.2
CAN.G572.25 Capsicum annuum HOM05D005140 ORTHO05D006288 1.1e-204 717.2 389 85.3
Peaxi162Scf00301g01111 Petunia axillaris HOM05D005140 ORTHO05D006288 1.1e-204 717.2 398 84.2
QL12p008469 Quercus lobata HOM05D005140 ORTHO05D006288 2.1e-203 713.0 413 82.3
Cc08_g11170 Coffea canephora HOM05D005140 ORTHO05D006288 4.6e-203 711.8 404 82.9
Sed0020438 Sechium edule HOM05D005140 ORTHO05D006288 6.1e-203 711.4 394 85.0
Duzib068G0986 Durio zibethinus HOM05D005140 ORTHO05D006288 3.0e-202 709.1 420 81.0
Ca_24617_v3 Cicer arietinum L. HOM05D005140 ORTHO05D006288 6.7e-202 708.0 421 80.5
Psat2g175480 Pisum sativum HOM05D005140 ORTHO05D006288 1.5e-201 706.8 413 81.4
PGR031G2829 Punica granatum HOM05D005140 ORTHO05D006288 1.5e-201 706.8 397 83.1
Migut.F01520 Erythranthe guttata HOM05D005140 ORTHO05D006288 3.3e-201 705.7 410 80.7
Eucgr.D02138 Eucalyptus grandis HOM05D005140 ORTHO05D006288 7.4e-201 704.5 430 79.5
COL.COLO4_06693 Corchorus olitorius HOM05D005140 ORTHO05D006288 1.3e-200 703.7 410 82.4
Manes.01G182900 Manihot esculenta HOM05D005140 ORTHO05D006288 1.3e-200 703.7 390 84.6
arahy.Tifrunner.gnm1.ann1.FH98R9 Arachis hypogaea HOM05D005140 ORTHO05D006288 2.2e-200 703.0 420 80.5
arahy.Tifrunner.gnm1.ann1.W7TPG2 Arachis hypogaea HOM05D005140 ORTHO05D006288 2.2e-200 703.0 420 80.5
Lj2g0026795 Lotus japonicus HOM05D005140 ORTHO05D006288 3.7e-200 702.2 396 84.1
Lsat_1_v5_gn_6_94760 Lactuca sativa HOM05D005140 ORTHO05D006288 4.8e-200 701.8 421 81.2
RcHm_v2.0_Chr7g0206411 Rosa chinensis HOM05D005140 ORTHO05D006288 4.8e-200 701.8 406 83.0
DCAR_008319 Daucus carota HOM05D005140 ORTHO05D006288 6.3e-200 701.4 393 84.0
CANSAT21G2106 Cannabis sativa HOM05D005140 ORTHO05D006288 1.4e-199 700.3 425 80.0
Haze_08349 Corylus avellana HOM05D005140 ORTHO05D006288 9.0e-199 697.6 401 82.3
FAN13G1317 Fragaria x ananassa HOM05D005140 ORTHO05D006288 9.0e-199 697.6 410 82.9
FvH4_5g20680 Fragaria vesca HOM05D005140 ORTHO05D006288 1.5e-198 696.8 407 83.3
FAN08G1378 Fragaria x ananassa HOM05D005140 ORTHO05D006288 4.5e-198 695.3 398 84.7
Potri.001G149900 Populus trichocarpa HOM05D005140 ORTHO05D006288 5.9e-198 694.9 390 83.3
FAN04G2093 Fragaria x ananassa HOM05D005140 ORTHO05D006288 7.7e-198 694.5 409 82.9
vmacro14121 Vaccinium macrocarpon HOM05D005140 ORTHO05D006288 5.0e-197 691.8 428 82.2
TWI60G0080 Tripterygium wilfordii HOM05D005140 ORTHO05D006288 3.2e-196 689.1 408 80.4
Hund14471 Selenicereus undatus HOM05D005140 ORTHO05D006288 1.2e-195 687.2 413 81.4
Gohir.A08G162300 Gossypium hirsutum HOM05D005140 ORTHO05D006288 2.1e-195 686.4 396 83.3
Nitab4.5_0004689g0020 Nicotiana tabacum HOM05D005140 ORTHO05D006288 5.7e-193 678.3 399 80.5
Ciclev10019303m.g Citrus clementina HOM05D005140 ORTHO05D006288 1.3e-192 677.2 387 82.2
unitig_699.g19774 Utricularia gibba HOM05D005140 ORTHO05D006288 2.2e-192 676.4 413 78.0
Sabra01G0119900 Salix brachista HOM05D005140 ORTHO05D006288 6.9e-191 671.4 435 74.5
Nitab4.5_0012059g0010 Nicotiana tabacum HOM05D005140 ORTHO05D006288 1.5e-190 670.2 414 77.5
Ah.12g053860 Amaranthus hybridus HOM05D005140 ORTHO05D006288 1.9e-188 663.3 389 82.0
ECA240G1687 Erigeron canadensis HOM05D005140 ORTHO05D006288 1.2e-187 660.6 401 79.6
MD00G1132300 Malus domestica HOM05D005140 ORTHO05D006288 3.6e-187 659.1 411 79.1
EL10Ac5g12239 Beta vulgaris HOM05D005140 ORTHO05D006288 4.7e-187 658.7 445 72.6
Medtr5g013580 Medicago truncatula HOM05D005140 ORTHO05D006288 1.8e-186 656.8 396 79.3
MD06G1045500 Malus domestica HOM05D005140 ORTHO05D006288 8.8e-186 654.4 416 77.6
TPR.G22969 Trifolium pratense HOM05D005140 ORTHO05D006288 3.1e-183 646.0 398 78.9
Nn1g00730 Nelumbo nucifera HOM05D005140 ORTHO05D006288 1.5e-182 643.7 389 79.2
PSO063G3549 Papaver somniferum HOM05D005140 ORTHO05D006288 2.6e-182 642.9 412 76.9
PSO782G2508 Papaver somniferum HOM05D005140 ORTHO05D006288 4.5e-182 642.1 412 76.9
FAN18G3556 Fragaria x ananassa HOM05D005140 ORTHO05D006288 1.1e-180 637.5 397 79.6
MBI04_g38568_MAGBIO Magnolia biondii HOM05D005140 ORTHO05D006288 2.7e-179 632.9 395 78.2
Aqoxy3G02576 Aquilegia oxysepala HOM05D005140 ORTHO05D006288 8.0e-179 631.3 395 76.5
Lj9A525T29 Lonicera japonica HOM05D005140 ORTHO05D006288 1.0e-178 630.9 381 80.1
THA.LOC104798349 Tarenaya hassleriana HOM05D005140 ORTHO05D006288 2.8e-176 622.9 414 72.5
GSVIVG01013286001 Vitis vinifera HOM05D005140 ORTHO05D006288 4.5e-174 615.5 322 90.4
Carub.0007s2375 Capsella rubella HOM05D005140 ORTHO05D006288 1.1e-172 610.9 411 71.0
HanXRQChr03g0089631 Helianthus annuus HOM05D005140 ORTHO05D006288 8.0e-171 604.7 396 74.7
AT4G17620 Arabidopsis thaliana HOM05D005140 ORTHO05D006288 5.2e-170 602.1 413 70.5
ATR0665G273 Amborella trichopoda HOM05D005140 ORTHO05D006288 1.2e-169 600.9 412 71.1
CDE04G2928 Ceratophyllum demersum HOM05D005140 ORTHO05D006288 3.4e-169 599.4 398 73.9
Aa31LG6G380 Aethionema arabicum HOM05D005140 ORTHO05D006288 5.7e-169 598.6 404 70.5
Sp7g16510 Schrenkiella parvula HOM05D005140 ORTHO05D006288 1.3e-168 597.4 409 69.9
CARHR224350 Cardamine hirsuta HOM05D005140 ORTHO05D006288 2.2e-168 596.7 412 69.4
A03p50570 Brassica napus HOM05D005140 ORTHO05D006288 2.4e-167 593.2 411 69.8
A01p09690 Brassica napus HOM05D005140 ORTHO05D006288 2.0e-166 590.1 409 70.2
HPP92_020526 Vanilla planifolia HOM05D005140 ORTHO05D006288 4.5e-166 589.0 401 71.8
BcaNung03452 Brassica carinata HOM05D005140 ORTHO05D006288 5.9e-166 588.6 390 71.5
Thhalv10024864m.g Eutrema salsugineum HOM05D005140 ORTHO05D006288 5.9e-166 588.6 411 69.3
BcaC09g51625 Brassica carinata HOM05D005140 ORTHO05D006288 1.0e-165 587.8 410 68.8
BcaNung00074 Brassica carinata HOM05D005140 ORTHO05D006288 1.3e-165 587.4 422 68.0
BcaC06g33554 Brassica carinata HOM05D005140 ORTHO05D006288 2.2e-165 586.6 409 68.5
C01p11300 Brassica napus HOM05D005140 ORTHO05D006288 2.9e-165 586.3 421 67.5
BraA03t14147Z Brassica rapa HOM05D005140 ORTHO05D006288 8.5e-165 584.7 413 68.5
Lj2C253G13 Lonicera japonica HOM05D005140 ORTHO05D006288 4.2e-164 582.4 409 71.9
HPP92_022002 Vanilla planifolia HOM05D005140 ORTHO05D006288 3.6e-163 579.3 401 70.1
AUR62007191 Chenopodium quinoa HOM05D005140 ORTHO05D006288 6.1e-163 578.6 352 77.8
BolC7t45397H Brassica oleracea HOM05D005140 ORTHO05D006288 2.3e-162 576.6 407 68.1
C07p48890 Brassica napus HOM05D005140 ORTHO05D006288 1.5e-161 573.9 407 67.8
Aa31LG9G15140 Aethionema arabicum HOM05D005140 ORTHO05D006288 2.6e-161 573.2 392 69.9
BraA01t00912Z Brassica rapa HOM05D005140 ORTHO05D006288 9.1e-159 564.7 416 67.1
SGA_v2.0_scaffold6G03141 Striga asiatica HOM05D005140 ORTHO05D006288 3.5e-158 562.8 358 75.1
MBI04_g46822_MAGBIO Magnolia biondii HOM05D005140 ORTHO05D006288 7.7e-158 561.6 362 76.5
HPP92_028085 Vanilla planifolia HOM05D005140 ORTHO05D006288 2.3e-157 560.1 411 68.9
Sc01g0007900 Simmondsia chinensis HOM05D005140 ORTHO05D006288 3.3e-156 556.2 319 81.5
VMungo0239G0001 Vigna mungo HOM05D005140 ORTHO05D006288 2.1e-155 553.5 281 91.5
BcaNung06713 Brassica carinata HOM05D005140 ORTHO05D006288 2.8e-155 553.1 363 71.6
THA.LOC104814458 Tarenaya hassleriana HOM05D005140 ORTHO05D006288 8.9e-154 548.1 419 64.7
AUR62018812 Chenopodium quinoa HOM05D005140 ORTHO05D006288 3.5e-142 509.6 280 83.6
Hma1.2p1_1672F.1_g296780 Hydrangea macrophylla HOM05D005140 ORTHO05D006288 2.1e-139 500.4 326 76.4
Os05g0392100 Oryza sativa ssp. japonica HOM05D005140 ORTHO05D006288 8.9e-138 495.0 383 65.3
GSVIVG01013283001 Vitis vinifera HOM05D005140 ORTHO05D006288 6.4e-120 435.6 415 59.0
Zm00001eb287280 Zea mays HOM05D005140 ORTHO05D006288 1.4e-119 434.5 265 78.1
SHI07711 Sapria himalayana HOM05D005140 ORTHO05D006288 5.1e-117 426.0 348 61.8
CDE12G0612 Ceratophyllum demersum HOM05D005140 ORTHO05D006288 6.2e-115 419.1 326 64.1
AagrBONN_evm.TU.Sc2ySwM_344.2637 Anthoceros agrestis HOM05D005140 ORTHO05D006288 9.3e-111 405.2 374 53.5
Pp3c10_5020 Physcomitrium patens HOM05D005140 ORTHO05D006288 1.6e-107 394.4 427 48.5
Mapoly0062s0029 Marchantia polymorpha HOM05D005140 ORTHO05D006288 2.9e-104 383.6 335 57.3
SMO259G0041 Selaginella moellendorffii HOM05D005140 ORTHO05D006288 2.5e-95 354.0 298 54.4
BolC1t01096H Brassica oleracea HOM05D005140 ORTHO05D006288 3.2e-95 353.6 191 81.7
Oeu017029.1 Olea europaea HOM05D005140 ORTHO05D006288 9.0e-90 335.5 163 92.0
CBR_g48842 Chara braunii HOM05D005140 ORTHO05D006288 2.9e-88 330.5 429 45.7
Peaxi162Scf00715g00010 Petunia axillaris HOM05D005140 ORTHO05D006288 2.1e-86 324.3 230 70.4
Cpa.g.sc98.58 Carica papaya HOM05D005140 ORTHO05D006288 7.4e-84 315.8 259 63.3
Oeu062963.3 Olea europaea HOM05D005140 ORTHO05D006288 9.4e-71 272.3 249 59.0
QL12p008508 Quercus lobata HOM05D005140 ORTHO05D006288 8.2e-67 259.2 174 74.7
Thecc.03G238400 Theobroma cacao HOM05D005140 ORTHO05D006288 5.4e-50 203.4 140 73.6
Psat1g146680 Pisum sativum HOM05D005140 ORTHO05D006288 2.8e-38 164.5 87 88.5
Oeu017031.1 Olea europaea HOM05D005140 ORTHO05D006288 1.3e-35 155.6 108 73.1
Cpa.g.c32337.2 Carica papaya HOM05D005140 ORTHO05D006288 6.4e-35 153.3 103 76.7
MCO13G373 Micromonas commoda HOM05D005140 ORTHO05D006288 2.3e-29 134.8 318 31.8
MD10G1199900 Malus domestica HOM05D005140 ORTHO05D006288 4.4e-28 130.6 79 79.7
SEGI_19334 Sequoiadendron giganteum HOM05D005140 ORTHO05D000001 1.3e-24 119.0 77 72.7
GSVIVG01001794001 Vitis vinifera HOM05D005140 ORTHO05D006288 7.5e-20 103.2 77 64.9
Cre07.g338400 Chlamydomonas reinhardtii HOM05D005140 ORTHO05D006288 9.8e-20 102.8 270 30.0
Cfa024662 Carpinus fangiana HOM05D005140 ORTHO05D006288 3.2e-18 97.8 223 32.3
ECA233G4689 Erigeron canadensis HOM05D005140 ORTHO05D006288 9.5e-15 86.3 85 55.3
Dinv25151 Davidia involucrata HOM05D005140 ORTHO05D006288 1.2e-14 85.9 46 87.0
Dinv00162 Davidia involucrata HOM05D005140 ORTHO05D006288 1.4e-13 82.4 41 90.2
Dinv25145 Davidia involucrata HOM05D009864 ORTHO05D010207 2.6e-12 78.2 86 54.7
DCAR_016064 Daucus carota HOM05D005140 ORTHO05D006288 3.5e-09 67.8 52 61.5
Gohir.A08G083762 Gossypium hirsutum HOM05D005140 ORTHO05D006288 4.6e-09 67.4 29 93.1
Haze_00507 Corylus avellana HOM05D005781 ORTHO05D165033 3.6e-06 57.8 36 66.7


User provided reference genes

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